Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004188

Physical Location & Seq

Genomic Coordinates Forward (+)

33304506 .. 33308256

Gene Structure 3751 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0290000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

TTGGCATGGTGCTTCCTCCTCTGCTTATCAGGTGGAACGTGCTGCAGACCAAGACGGGAGAACCCCAAGCATCTTGGACACGTATGCGCATGCTGTCGAACAAAGTTGGCAATTTGCTACTTGCATGCATTTTCCAAACGTGTGAAAATCATTACTAACTTGGAAAATTCAGGTAAAATGCATGGAGCCACTGGAGATGTAGCATGTGATGAGTATCATAAATACAAGGAAGATGTGCAACTAATGGTGGATACTGGTTTAGAGGCGTATATATTTTCCATCTCATGGTCAAGACTCATACCCAATGGCAGAGGACCTGTGAATCCAAAGGGTCTACAATATTACAACAATCTCATTGACCAACTCATTAGCAAAGGAATCCAGCCTCATGTTACTTTACACCACAGTGATCTCCCACAGGCACTCGGCGATGAGTATGGAGGATGGGTTAGCCCACAGATTGTGTATGTAGAAATAATGTGGATAAATATGAATTATTGGATTGGATTGGATTCTGATATTGCAGAAAAGACTTCACTGCAAATGCAAATGTTTGCTTCGAACAGTGGCGATCGAGTTGGGCATTGGACTACTATGAATGAGCCAAATGTATTTGTACTCGGTGGTTATGATATTGGATTCCTTCCACCACAACGATGCTCAGCTCCATTTGGTTTTAATTGCTCGAGGGCTGCTGCACTCTACAATCATACCTACCAGCACAAGCAGCGTGGGTTTATAGGCATCAATCTATTTTCCCATTGGTTTATTCCTCGAACCAAAACCCATCAAGACCAAGTTGCTGCTCAAAGAGCTGTAGACTTCTATTTTGGTTGGGTTATGCATCCTTTGGTGTTTGGAGAGTACCCTCAAGTAATGAAAAAGAATGCAGGCTCTAGAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

301

Amino Acids

34.17

Weight (kDa)

8.59

Isoelectric Point (pI)

33.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	59 - 155	5e-38	Glycosyl hydrolase family 1
Glyco_hydro_1	PF00232	185 - 299	1e-16	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27760
fragaria_vesca	FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650
malus_domestica	MD03G1136100.v1.1
prunus_persica	Prupe.6G120800_v2.0.a1 Prupe.6G120800_v2.0.a1 Prupe.6G120800_v2.0.a1 Prupe.6G120800_v2.0.a1 Prupe.6G120800_v2.0.a1 Prupe.6G120800_v2.0.a1 Prupe.6G120800_v2.0.a1
pyrus_communis	pycom03g09200
rosa_chinensis	RchiOBHm_Chr5g0055011
rosa_laevigata	RLG00000034956
rosa_multiflora	Rmu_sc0003653.1_g000029
rosa_roxburghii	Rroxscaffold_1G00025500
rosa_rugosa	Rorug05G0289900 Rorug05G0290000
rosa_samantha	Rh5AG360000 Rh5BG371000 Rh5CG393300 Rh5DG384800
rosa_wichuraiana	Rw5G033870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	88
AccB7I	CCANNNNNTGG	1 cut(s)	285
AccI	GTMKAC	2 cut(s)	334, 819
AcsI	RAATTY	2 cut(s)	166, 900
AfaI	GTAC	2 cut(s)	618, 866
AfiI	CCNNNNNNNGG	1 cut(s)	285
AflIII	ACRYGT	2 cut(s)	79, 139
AleI	CACNNNNGTG	1 cut(s)	405
AluBI	AGCT	2 cut(s)	665, 815
AluI	AGCT	2 cut(s)	665, 815
Ama87I	CYCGRG	1 cut(s)	685
ApeKI	GCWGC	5 cut(s)	42, 692, 695, 727, 803
ApoI	RAATTY	2 cut(s)	166, 900
ArsI	GACNNNNNNTTYG	2 cut(s)	812, 844
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	314
AsuII	TTCGAA	1 cut(s)	560
AvaI	CYCGRG	1 cut(s)	685
AvaII	GGWCC	1 cut(s)	314
BbvI	GCAGC	5 cut(s)	29, 679, 682, 739, 790
BccI	CCATC	3 cut(s)	287, 438, 795
BciVI	GTATCC	1 cut(s)	244
BfaI	CTAG	1 cut(s)	897
BfmI	CTRYAG	2 cut(s)	43, 816
BfuI	GTATCC	1 cut(s)	244
BisI	GCNGC	5 cut(s)	43, 693, 696, 728, 804
BlpI	GCTNAGC	1 cut(s)	661
BlsI	GCNGC	5 cut(s)	44, 694, 697, 729, 805
Bme18I	GGWCC	1 cut(s)	314
BmeT110I	CYCGRG	1 cut(s)	685
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	187
BmsI	GCATC	4 cut(s)	79, 647, 753, 853
BpmI	CTGGAG	1 cut(s)	213
Bpu1102I	GCTNAGC	1 cut(s)	661
Bpu14I	TTCGAA	1 cut(s)	560
BpuEI	CTTGAG	1 cut(s)	855
BsaAI	YACGTR	1 cut(s)	82
BsaBI	GATNNNNATC	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse1I	ACTGG	2 cut(s)	196, 259
Bse8I	GATNNNNATC	1 cut(s)	213
BseGI	GGATG	2 cut(s)	449, 844
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	675
BseNI	ACTGG	2 cut(s)	196, 259
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	5 cut(s)	29, 679, 682, 739, 790
BsgI	GTGCAG	1 cut(s)	681
Bsh1285I	CGRYCG	1 cut(s)	574
BsiEI	CGRYCG	1 cut(s)	574
BsiHKCI	CYCGRG	1 cut(s)	685
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmI	GAATGC	1 cut(s)	892
BsoBI	CYCGRG	1 cut(s)	685
Bsp119I	TTCGAA	1 cut(s)	560
Bsp143I	GATC	2 cut(s)	409, 571
Bsp1720I	GCTNAGC	1 cut(s)	661
BspCNI	CTCAG	1 cut(s)	674
BspLI	GGNNCC	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	47
BspT104I	TTCGAA	1 cut(s)	560
BsrI	ACTGG	2 cut(s)	196, 259
BssMI	GATC	2 cut(s)	409, 571
Bst4CI	ACNGT	2 cut(s)	407, 566
BstBAI	YACGTR	1 cut(s)	82
BstBI	TTCGAA	1 cut(s)	560
BstC8I	GCNNGC	3 cut(s)	91, 126, 892
BstDEI	CTNAG	1 cut(s)	661
BstF5I	GGATG	2 cut(s)	449, 844
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	2 cut(s)	412, 574
BstMBI	GATC	2 cut(s)	409, 571
BstMCI	CGRYCG	1 cut(s)	574
BstMWI	GCNNNNNNNGC	2 cut(s)	727, 812
BstNSI	RCATGY	3 cut(s)	93, 128, 207
BstSFI	CTRYAG	2 cut(s)	43, 816
BstV1I	GCAGC	5 cut(s)	29, 679, 682, 739, 790
BsuI	GTATCC	1 cut(s)	244
BtgZI	GCGATG	1 cut(s)	444
BtsCI	GGATG	2 cut(s)	449, 844
BtsI	GCAGTG	1 cut(s)	536
BtsIMutI	CAGTG	4 cut(s)	189, 412, 536, 571
Cac8I	GCNNGC	3 cut(s)	91, 126, 892
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	617, 865
CspCI	CAANNNNNGTGG	2 cut(s)	712, 747
CviAII	CATG	7 cut(s)	6, 90, 125, 182, 204, 285, 389
CviJI	RGCY	8 cut(s)	188, 385, 453, 604, 665, 692, 815, 894
CviKI_1	RGCY	8 cut(s)	188, 385, 453, 604, 665, 692, 815, 894
CviQI	GTAC	2 cut(s)	617, 865
DdeI	CTNAG	1 cut(s)	661
DpnI	GATC	2 cut(s)	411, 573
DpnII	GATC	2 cut(s)	409, 571
Eco47I	GGWCC	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	685
EcoO109I	RGGNCCY	1 cut(s)	314
EcoT22I	ATGCAT	3 cut(s)	130, 183, 846
FaeI	CATG	7 cut(s)	9, 93, 128, 185, 207, 288, 392
FatI	CATG	7 cut(s)	5, 89, 124, 181, 203, 284, 388
FblI	GTMKAC	2 cut(s)	334, 819
Fnu4HI	GCNGC	5 cut(s)	43, 693, 696, 728, 804
FokI	GGATG	2 cut(s)	456, 831
Fsp4HI	GCNGC	5 cut(s)	43, 693, 696, 728, 804
FspAI	RTGCGCAY	1 cut(s)	88
FspBI	CTAG	1 cut(s)	897
FspI	TGCGCA	1 cut(s)	88
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	5 cut(s)	43, 693, 696, 728, 804
GsuI	CTGGAG	1 cut(s)	213
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	7 cut(s)	9, 93, 128, 185, 207, 288, 392
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HinfI	GANTC	5 cut(s)	294, 322, 378, 512, 639
Hpy166II	GTNNAC	2 cut(s)	335, 820
Hpy188I	TCNGA	1 cut(s)	517
Hpy188III	TCNNGA	3 cut(s)	291, 791, 897
Hpy8I	GTNNAC	2 cut(s)	335, 820
HpyAV	CCTTC	1 cut(s)	653
HpyCH4III	ACNGT	2 cut(s)	407, 566
HpyCH4IV	ACGT	3 cut(s)	38, 81, 139
HpyF10VI	GCNNNNNNNGC	2 cut(s)	727, 812
HpyF3I	CTNAG	1 cut(s)	661
HpySE526I	ACGT	3 cut(s)	38, 81, 139
Hsp92II	CATG	7 cut(s)	9, 93, 128, 185, 207, 288, 392
HspAI	GCGC	1 cut(s)	87
Kzo9I	GATC	2 cut(s)	409, 571
LmnI	GCTCC	2 cut(s)	185, 670
LpnPI	CCDG	9 cut(s)	15, 156, 177, 240, 330, 395, 404, 731, 876
Lsp1109I	GCAGC	5 cut(s)	29, 679, 682, 739, 790
LweI	GCATC	4 cut(s)	79, 647, 753, 853
MaeI	CTAG	1 cut(s)	897
MaeII	ACGT	3 cut(s)	38, 81, 139
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	2 cut(s)	411, 573
MboI	GATC	2 cut(s)	409, 571
MboII	GAAGA	1 cut(s)	242
MluCI	AATT	5 cut(s)	111, 166, 493, 679, 900
MlyI	GAGTC	1 cut(s)	288
MnlI	CCTC	9 cut(s)	26, 29, 256, 305, 396, 434, 681, 783, 879
Mph1103I	ATGCAT	3 cut(s)	130, 183, 846
MseI	TTAA	1 cut(s)	678
MslI	CAYNNNNRTG	2 cut(s)	405, 655
Mva1269I	GAATGC	1 cut(s)	892
MwoI	GCNNNNNNNGC	2 cut(s)	727, 812
NdeII	GATC	2 cut(s)	409, 571
NlaIII	CATG	7 cut(s)	9, 93, 128, 185, 207, 288, 392
NlaIV	GGNNCC	1 cut(s)	187
NmeAIII	GCCGAG	1 cut(s)	405
NsbI	TGCGCA	1 cut(s)	88
NsiI	ATGCAT	3 cut(s)	130, 183, 846
NspI	RCATGY	3 cut(s)	93, 128, 207
NspV	TTCGAA	1 cut(s)	560
OliI	CACNNNNGTG	1 cut(s)	405
PaeI	GCATGC	2 cut(s)	93, 128
PaeR7I	CTCGAG	1 cut(s)	685
PctI	GAATGC	1 cut(s)	892
PfeI	GAWTC	4 cut(s)	322, 378, 512, 639
PflMI	CCANNNNNTGG	1 cut(s)	285
PkrI	GCNGC	5 cut(s)	44, 694, 697, 729, 805
Ple19I	CGATCG	1 cut(s)	574
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
Ppu21I	YACGTR	1 cut(s)	82
PpuMI	RGGWCCY	1 cut(s)	314
Psp5II	RGGWCCY	1 cut(s)	314
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	314
PspPPI	RGGWCCY	1 cut(s)	314
PspXI	VCTCGAGB	1 cut(s)	685
PstI	CTGCAG	1 cut(s)	47
PvuI	CGATCG	1 cut(s)	574
RsaI	GTAC	2 cut(s)	618, 866
RsaNI	GTAC	2 cut(s)	617, 865
RseI	CAYNNNNRTG	2 cut(s)	405, 655
SaqAI	TTAA	1 cut(s)	678
SatI	GCNGC	5 cut(s)	43, 693, 696, 728, 804
Sau3AI	GATC	2 cut(s)	409, 571
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	1 cut(s)	288
SetI	ASST	9 cut(s)	34, 41, 84, 142, 175, 319, 667, 716, 817
SfaNI	GCATC	4 cut(s)	79, 647, 753, 853
SfcI	CTRYAG	2 cut(s)	43, 816
Sfr274I	CTCGAG	1 cut(s)	685
SfuI	TTCGAA	1 cut(s)	560
SinI	GGWCC	1 cut(s)	314
SlaI	CTCGAG	1 cut(s)	685
SmiMI	CAYNNNNRTG	2 cut(s)	405, 655
SmlI	CTYRAG	2 cut(s)	685, 870
SmoI	CTYRAG	2 cut(s)	685, 870
SphI	GCATGC	2 cut(s)	93, 128
Sse9I	AATT	5 cut(s)	111, 166, 493, 679, 900
SspI	AATATT	1 cut(s)	341
SspMI	CTAG	1 cut(s)	897
TaaI	ACNGT	2 cut(s)	407, 566
TaiI	ACGT	3 cut(s)	41, 84, 142
TaqI	TCGA	5 cut(s)	97, 560, 574, 686, 775
TasI	AATT	5 cut(s)	111, 166, 493, 679, 900
TatI	WGTACW	1 cut(s)	616
TfiI	GAWTC	4 cut(s)	322, 378, 512, 639
Tru1I	TTAA	1 cut(s)	678
Tru9I	TTAA	1 cut(s)	678
TscAI	CASTG	4 cut(s)	196, 412, 543, 571
TseI	GCWGC	5 cut(s)	42, 692, 695, 727, 803
TspDTI	ATGAA	3 cut(s)	506, 611, 893
TspRI	CASTG	4 cut(s)	196, 412, 543, 571
Van91I	CCANNNNNTGG	1 cut(s)	285
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	2 cut(s)	166, 900
XbaI	TCTAGA	1 cut(s)	896
XceI	RCATGY	3 cut(s)	93, 128, 207
XhoI	CTCGAG	1 cut(s)	685
XmiI	GTMKAC	2 cut(s)	334, 819
XspI	CTAG	1 cut(s)	897
Zsp2I	ATGCAT	3 cut(s)	130, 183, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.