AT2G27830

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010479
Physical Location & Seq
Forward (+)
11860218 .. 11861525
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G27830.1

Sequence Viewer

Length: 573 bp
ATGAAGAACGGTAACCGGAAAACAACGCCGGAAACAGAGAAGTCTCACCGGAGAAAGTTATCAGAGAAAGCGATGTCGTTTCACGGCAGAGGAACAACGCCGTTATCAAATCCAGGCGAGCTTCGAAGACCGAAAACGTTACCGGAGTTATTCTCCACCGGTCAAAGCATCACCGTACCGGAGACGGTTTCACTTCCGCCACGTTTGACGAAACTTTTACTTAACGTGACGGTACAAGGAAGTTTAGGAGCCGTACAAATTATAATCTCGCCGGAATCCACCGTGAGTGATTTAATCGACGCCGCCGTTCGTCAGTACGTTAAAGAAGCTCGCCGGCCATTTTTACCGGAATCTGAACCGTCACGATTTGATCTTCATTACTCGCAGTTTAGTCTTGAGAGTATTGTAAGAGACGAGAAGTTGATATCGCTAGGGTCGAGAAACTTTTTCTTATGTGGTCGGAAAGAGACCGGAGGGTTTATCGGCTGTGGTTTATCGTCGGAATCTTGTTCTAAGGAAGCAGAGAAAGTGGCTAAAACTGGTTTTCATTGGCTCAAATTTATGGGCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.13

Weight (kDa)

9.6

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7054 PF23156 69 - 152 1.1e-36 Domain of unknown function (DUF7054)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 263
AciI CCGC 2 cut(s) 197, 303
AclI AACGTT 1 cut(s) 137
AcoI YGGCCR 1 cut(s) 335
AcsI RAATTY 1 cut(s) 557
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 4 cut(s) 177, 234, 255, 317
AgeI ACCGGT 1 cut(s) 158
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 2 cut(s) 121, 329
AluI AGCT 2 cut(s) 121, 329
Alw26I GTCTC 4 cut(s) 48, 176, 405, 461
AoxI GGCC 1 cut(s) 335
ApoI RAATTY 1 cut(s) 557
AsiGI ACCGGT 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 38, 163
AsuII TTCGAA 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 133
BceAI ACGGC 4 cut(s) 85, 100, 236, 290
BciT130I CCWGG 1 cut(s) 114
BcoDI GTCTC 4 cut(s) 48, 176, 405, 461
BfaI CTAG 2 cut(s) 431, 571
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
Bme1390I CCNGG 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 177
BpiI GAAGAC 1 cut(s) 133
BplI GAGNNNNNCTC 2 cut(s) 137, 169
Bpu14I TTCGAA 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 416
BsaHI GRCGYC 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 461
BsaWI WCCGGW 7 cut(s) 15, 48, 142, 158, 178, 346, 470
Bse118I RCCGGY 2 cut(s) 158, 333
Bse1I ACTGG 1 cut(s) 544
BseBI CCWGG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 544
BshFI GGCC 1 cut(s) 337
BshTI ACCGGT 1 cut(s) 158
BsmAI GTCTC 4 cut(s) 48, 176, 405, 461
BsmBI CGTCTC 2 cut(s) 176, 405
BsnI GGCC 1 cut(s) 337
Bso31I GGTCTC 1 cut(s) 461
Bsp119I TTCGAA 1 cut(s) 124
Bsp143I GATC 1 cut(s) 370
BspACI CCGC 2 cut(s) 197, 303
BspANI GGCC 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 250
BspT104I TTCGAA 1 cut(s) 124
BspTNI GGTCTC 1 cut(s) 461
BsrFI RCCGGY 2 cut(s) 158, 333
BsrI ACTGG 1 cut(s) 544
BssAI RCCGGY 2 cut(s) 158, 333
BssMI GATC 1 cut(s) 370
BssNI GRCGYC 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 6 cut(s) 11, 175, 187, 232, 283, 360
BstACI GRCGYC 1 cut(s) 300
BstBI TTCGAA 1 cut(s) 124
BstC8I GCNNGC 3 cut(s) 119, 331, 335
BstDEI CTNAG 1 cut(s) 513
BstEII GGTNACC 1 cut(s) 11
BstKTI GATC 1 cut(s) 373
BstMAI GTCTC 4 cut(s) 48, 176, 405, 461
BstMBI GATC 1 cut(s) 370
BstNI CCWGG 1 cut(s) 114
BstPI GGTNACC 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 133
BsuRI GGCC 1 cut(s) 337
BtgZI GCGATG 1 cut(s) 86
Cac8I GCNNGC 3 cut(s) 119, 331, 335
Cfr10I RCCGGY 2 cut(s) 158, 333
CseI GACGC 1 cut(s) 308
Csp6I GTAC 4 cut(s) 176, 233, 254, 316
CspAI ACCGGT 1 cut(s) 158
CviJI RGCY 8 cut(s) 121, 251, 329, 337, 486, 533, 553, 567
CviKI_1 RGCY 8 cut(s) 121, 251, 329, 337, 486, 533, 553, 567
CviQI GTAC 4 cut(s) 176, 233, 254, 316
DdeI CTNAG 1 cut(s) 513
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 335
EciI GGCGGA 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 461
Eco32I GATATC 1 cut(s) 426
Eco91I GGTNACC 1 cut(s) 11
EcoO65I GGTNACC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 112
EcoRV GATATC 1 cut(s) 426
Esp3I CGTCTC 2 cut(s) 176, 405
FaiI YATR 3 cut(s) 263, 454, 563
Fnu4HI GCNGC 1 cut(s) 303
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 2 cut(s) 431, 571
GluI GCNGC 1 cut(s) 303
HaeIII GGCC 1 cut(s) 337
HgaI GACGC 1 cut(s) 308
Hin1I GRCGYC 1 cut(s) 300
HinfI GANTC 3 cut(s) 275, 350, 503
HphI GGTGA 2 cut(s) 38, 163
Hpy188I TCNGA 4 cut(s) 64, 355, 462, 502
Hpy188III TCNNGA 3 cut(s) 363, 395, 438
Hpy99I CGWCG 2 cut(s) 302, 502
HpyCH4III ACNGT 6 cut(s) 11, 175, 187, 232, 283, 360
HpyCH4IV ACGT 4 cut(s) 137, 202, 225, 318
HpyF3I CTNAG 1 cut(s) 513
HpySE526I ACGT 4 cut(s) 137, 202, 225, 318
Hsp92I GRCGYC 1 cut(s) 300
KroI GCCGGC 1 cut(s) 333
KroNI GCCGGC 1 cut(s) 335
Kzo9I GATC 1 cut(s) 370
LmnI GCTCC 1 cut(s) 248
LweI GCATC 1 cut(s) 177
MaeI CTAG 2 cut(s) 431, 571
MaeII ACGT 4 cut(s) 137, 202, 225, 318
MaeIII GTNAC 4 cut(s) 11, 138, 226, 360
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 3 cut(s) 16, 138, 365
MluCI AATT 2 cut(s) 258, 557
MmeI TCCRAC 2 cut(s) 440, 480
MnlI CCTC 2 cut(s) 83, 467
MroNI GCCGGC 1 cut(s) 333
MseI TTAA 3 cut(s) 222, 293, 321
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
NaeI GCCGGC 1 cut(s) 335
NdeII GATC 1 cut(s) 370
NgoMIV GCCGGC 1 cut(s) 333
NlaIV GGNNCC 1 cut(s) 250
NmuCI GTSAC 2 cut(s) 226, 360
NspV TTCGAA 1 cut(s) 124
PcsI WCGNNNNNNNCGW 2 cut(s) 303, 434
PdiI GCCGGC 1 cut(s) 335
PfeI GAWTC 3 cut(s) 275, 350, 503
PinAI ACCGGT 1 cut(s) 158
PkrI GCNGC 1 cut(s) 304
PsiI TTATAA 1 cut(s) 263
Psp1406I AACGTT 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 112
PspEI GGTNACC 1 cut(s) 11
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 250
RsaI GTAC 4 cut(s) 177, 234, 255, 317
RsaNI GTAC 4 cut(s) 176, 233, 254, 316
SaqAI TTAA 3 cut(s) 222, 293, 321
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 1 cut(s) 370
ScrFI CCNGG 1 cut(s) 114
SetI ASST 6 cut(s) 123, 140, 205, 228, 321, 331
SfaNI GCATC 1 cut(s) 177
SfuI TTCGAA 1 cut(s) 124
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 2 cut(s) 258, 557
SsiI CCGC 2 cut(s) 197, 303
SspMI CTAG 2 cut(s) 431, 571
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 6 cut(s) 11, 175, 187, 232, 283, 360
TaiI ACGT 4 cut(s) 140, 205, 228, 321
TaqI TCGA 3 cut(s) 124, 297, 437
TaqII GACCGA 1 cut(s) 145
TasI AATT 2 cut(s) 258, 557
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 3 cut(s) 275, 350, 503
Tru1I TTAA 3 cut(s) 222, 293, 321
Tru9I TTAA 3 cut(s) 222, 293, 321
TseFI GTSAC 2 cut(s) 226, 360
Tsp45I GTSAC 2 cut(s) 226, 360
TspDTI ATGAA 3 cut(s) 17, 365, 536
XapI RAATTY 1 cut(s) 557
XspI CTAG 2 cut(s) 431, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.