Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007603.1

Orthogroup ID

OG0010479

Physical Location & Seq

Genomic Coordinates Reverse (-)

44212 .. 44931

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007603.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgccgagtccgaagagtcagcgaaggatgcaagaggagcacaagaaccggaggggcagattactctcggagagatcctcgtcgtttcacggccagatgttggccgcgacgtcgacggcgacacctcagctccggcggccgaagacggtcccggacatggtcctgtacagaaacgctgtcggagtcacgacgccgccgactgcgtcgccggaggtgcggcctaagctgacgaagctgctgctgaacgtgacgatacaagggagcgtcggtgccgtacaggtggttatgtccccggaatcgactgtcggagatcttgtggctggggccgtacggcagtacgagaaagaagggcgccggccgatcttcccctccgtcgatccctcacgcttcgacctccattattcccagttcagcttagaaagtttggatagggaggagaagctgatggagttggggtcgcgcaactttttcctgtgccctaagaagtcggccgcggacggtgggagtagcggtggcggaataacgacgtcgtctggttcatgttcgaaacaggtggagaaagcttccaaaactgggttttcttggctcaagtttatggattccctgctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

22.23

Weight (kDa)

9.9

Isoelectric Point (pI)

61.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27830
fragaria_vesca	FvH4_3g29930
malus_domestica	MD03G1134500.v1.1 MD11G1156700.v1.1 MD11G1156800.v1.1
prunus_persica	Prupe.6G118800_v2.0.a1 Prupe.6G118800_v2.0.a1
pyrus_communis	pycom03g09040 pycom11g12720
rosa_chinensis	RchiOBHm_Chr5g0055301
rosa_laevigata	RLG00000034981
rosa_multiflora	Rmu_co8020042.1_g000001 Rmu_sc0003641.1_g000006 Rmu_sc0007603.1_g000011
rosa_roxburghii	Rroxscaffold_1G00025010
rosa_rugosa	Rorug05G0292200
rosa_samantha	Rh5AG362000 Rh5BG373600 Rh5CG395700 Rh5DG387100
rosa_wichuraiana	Rw5G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	113, 530
AccB1I	GGYRCC	2 cut(s)	269, 351
AccB7I	CCANNNNNTGG	1 cut(s)	100
AccI	GTMKAC	1 cut(s)	113
AccII	CGCG	3 cut(s)	107, 460, 494
AciI	CCGC	8 cut(s)	105, 136, 194, 217, 492, 494, 510, 516
AclWI	GGATC	2 cut(s)	69, 371
AcoI	YGGCCR	5 cut(s)	91, 102, 137, 356, 489
AcyI	GRCGYC	4 cut(s)	110, 191, 352, 527
AfaI	GTAC	4 cut(s)	167, 276, 330, 338
AfiI	CCNNNNNNNGG	3 cut(s)	100, 157, 573
AluBI	AGCT	6 cut(s)	130, 226, 235, 414, 442, 563
AluI	AGCT	6 cut(s)	130, 226, 235, 414, 442, 563
Alw21I	GWGCWC	1 cut(s)	42
AlwI	GGATC	2 cut(s)	69, 371
AoxI	GGCC	7 cut(s)	91, 102, 137, 218, 324, 356, 489
ApeKI	GCWGC	2 cut(s)	235, 238
AspLEI	GCGC	2 cut(s)	354, 462
AspS9I	GGNCC	3 cut(s)	148, 160, 324
AsuC2I	CCSGG	2 cut(s)	152, 293
AsuII	TTCGAA	1 cut(s)	545
AvaII	GGWCC	2 cut(s)	148, 160
BaeGI	GKGCMC	1 cut(s)	479
BanI	GGYRCC	2 cut(s)	269, 351
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	222, 225
BccI	CCATC	1 cut(s)	439
BceAI	ACGGC	5 cut(s)	106, 132, 257, 311, 347
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BcnI	CCSGG	2 cut(s)	152, 293
BfoI	RGCGCY	1 cut(s)	355
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	7 cut(s)	105, 137, 194, 218, 236, 239, 492
BlsI	GCNGC	7 cut(s)	106, 138, 195, 219, 237, 240, 493
Bme1390I	CCNGG	2 cut(s)	152, 293
Bme18I	GGWCC	2 cut(s)	148, 160
BmgT120I	GGNCC	3 cut(s)	148, 160, 324
BmiI	GGNNCC	4 cut(s)	150, 271, 325, 353
BmrFI	CCNGG	2 cut(s)	152, 293
BmrI	ACTGGG	2 cut(s)	400, 582
BmsI	GCATC	1 cut(s)	18
BmuI	ACTGGG	2 cut(s)	400, 582
BpiI	GAAGAC	1 cut(s)	149
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
Bpu10I	CCTNAGC	2 cut(s)	126, 222
Bpu14I	TTCGAA	1 cut(s)	545
BpuEI	CTTGAG	1 cut(s)	572
BpuMI	CCSGG	2 cut(s)	152, 293
BsaHI	GRCGYC	4 cut(s)	110, 191, 352, 527
BsaJI	CCNNGG	2 cut(s)	291, 492
BsaWI	WCCGGW	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 157, 573
Bse118I	RCCGGY	1 cut(s)	354
Bse1I	ACTGG	2 cut(s)	406, 577
BseDI	CCNNGG	2 cut(s)	291, 492
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	3 cut(s)	100, 157, 573
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	2 cut(s)	406, 577
BseRI	GAGGAG	2 cut(s)	50, 449
BseSI	GKGCMC	1 cut(s)	479
BseX3I	CGGCCG	3 cut(s)	137, 356, 489
BseXI	GCAGC	2 cut(s)	222, 225
BseYI	CCCAGC	1 cut(s)	320
Bsh1236I	CGCG	3 cut(s)	107, 460, 494
Bsh1285I	CGRYCG	3 cut(s)	140, 359, 492
BshFI	GGCC	7 cut(s)	93, 104, 139, 220, 326, 358, 491
BshNI	GGYRCC	2 cut(s)	269, 351
BsiEI	CGRYCG	3 cut(s)	140, 359, 492
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	6 cut(s)	49, 133, 152, 209, 293, 355
BsiWI	CGTACG	1 cut(s)	328
BslFI	GGGAC	2 cut(s)	134, 274
BslI	CCNNNNNNNGG	3 cut(s)	100, 157, 573
BsmFI	GGGAC	2 cut(s)	134, 274
BsnI	GGCC	7 cut(s)	93, 104, 139, 220, 326, 358, 491
Bsp119I	TTCGAA	1 cut(s)	545
Bsp1286I	GDGCHC	2 cut(s)	42, 479
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	4 cut(s)	74, 310, 360, 376
BspACI	CCGC	8 cut(s)	105, 136, 194, 217, 492, 494, 510, 516
BspANI	GGCC	7 cut(s)	93, 104, 139, 220, 326, 358, 491
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	3 cut(s)	107, 460, 494
BspLI	GGNNCC	4 cut(s)	150, 271, 325, 353
BspPI	GGATC	2 cut(s)	69, 371
BspT104I	TTCGAA	1 cut(s)	545
BspT107I	GGYRCC	2 cut(s)	269, 351
BsrFI	RCCGGY	1 cut(s)	354
BsrGI	TGTACA	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	406, 577
BssAI	RCCGGY	1 cut(s)	354
BssECI	CCNNGG	2 cut(s)	291, 492
BssMI	GATC	4 cut(s)	74, 310, 360, 376
BssNI	GRCGYC	4 cut(s)	110, 191, 352, 527
Bst4CI	ACNGT	3 cut(s)	148, 304, 500
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	4 cut(s)	110, 191, 352, 527
BstAUI	TGTACA	1 cut(s)	165
BstBI	TTCGAA	1 cut(s)	545
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	4 cut(s)	126, 222, 415, 480
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	1 cut(s)	33
BstFNI	CGCG	3 cut(s)	107, 460, 494
BstH2I	RGCGCY	1 cut(s)	355
BstHHI	GCGC	2 cut(s)	354, 462
BstKTI	GATC	4 cut(s)	77, 313, 363, 379
BstMBI	GATC	4 cut(s)	74, 310, 360, 376
BstMCI	CGRYCG	3 cut(s)	140, 359, 492
BstMWI	GCNNNNNNNGC	6 cut(s)	28, 37, 136, 214, 223, 232
BstSCI	CCNGG	2 cut(s)	150, 291
BstSLI	GKGCMC	1 cut(s)	479
BstUI	CGCG	3 cut(s)	107, 460, 494
BstV1I	GCAGC	2 cut(s)	222, 225
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	2 cut(s)	74, 310
BstYI	RGATCY	2 cut(s)	74, 310
BstZI	CGGCCG	3 cut(s)	137, 356, 489
BsuRI	GGCC	7 cut(s)	93, 104, 139, 220, 326, 358, 491
BtgI	CCRYGG	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	356
CfoI	GCGC	2 cut(s)	354, 462
Cfr10I	RCCGGY	1 cut(s)	354
Cfr13I	GGNCC	3 cut(s)	148, 160, 324
Cfr42I	CCGCGG	1 cut(s)	495
CseI	GACGC	3 cut(s)	192, 199, 253
Csp6I	GTAC	4 cut(s)	166, 275, 329, 337
CviAII	CATG	2 cut(s)	157, 540
CviQI	GTAC	4 cut(s)	166, 275, 329, 337
DdeI	CTNAG	4 cut(s)	126, 222, 415, 480
DinI	GGCGCC	1 cut(s)	353
DpnI	GATC	4 cut(s)	76, 312, 362, 378
DpnII	GATC	4 cut(s)	74, 310, 360, 376
EaeI	YGGCCR	5 cut(s)	91, 102, 137, 356, 489
EagI	CGGCCG	3 cut(s)	137, 356, 489
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
EciI	GGCGGA	1 cut(s)	531
EclXI	CGGCCG	3 cut(s)	137, 356, 489
Eco47I	GGWCC	2 cut(s)	148, 160
Eco52I	CGGCCG	3 cut(s)	137, 356, 489
EgeI	GGCGCC	1 cut(s)	353
EheI	GGCGCC	1 cut(s)	353
FaeI	CATG	2 cut(s)	160, 543
FaiI	YATR	4 cut(s)	158, 287, 541, 596
FaqI	GGGAC	2 cut(s)	134, 274
FatI	CATG	2 cut(s)	156, 539
FblI	GTMKAC	1 cut(s)	113
Fnu4HI	GCNGC	7 cut(s)	105, 137, 194, 218, 236, 239, 492
FokI	GGATG	1 cut(s)	40
Fsp4HI	GCNGC	7 cut(s)	105, 137, 194, 218, 236, 239, 492
GlaI	GCGC	2 cut(s)	353, 461
GluI	GCNGC	7 cut(s)	105, 137, 194, 218, 236, 239, 492
GsaI	CCCAGC	1 cut(s)	324
HaeII	RGCGCY	1 cut(s)	355
HaeIII	GGCC	7 cut(s)	93, 104, 139, 220, 326, 358, 491
HapII	CCGG	6 cut(s)	49, 133, 152, 209, 293, 355
HgaI	GACGC	3 cut(s)	192, 199, 253
HhaI	GCGC	2 cut(s)	354, 462
Hin1I	GRCGYC	4 cut(s)	110, 191, 352, 527
Hin1II	CATG	2 cut(s)	160, 543
Hin6I	GCGC	2 cut(s)	352, 460
HinP1I	GCGC	2 cut(s)	352, 460
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	561
HinfI	GANTC	5 cut(s)	7, 16, 183, 296, 599
HpaII	CCGG	6 cut(s)	49, 133, 152, 209, 293, 355
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	4 cut(s)	12, 70, 182, 308
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	2 cut(s)	18, 341
HpyCH4III	ACNGT	3 cut(s)	148, 304, 500
HpyCH4IV	ACGT	3 cut(s)	110, 246, 527
HpyCH4V	TGCA	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	6 cut(s)	28, 37, 136, 214, 223, 232
HpyF3I	CTNAG	4 cut(s)	126, 222, 415, 480
HpySE526I	ACGT	3 cut(s)	110, 246, 527
Hsp92I	GRCGYC	4 cut(s)	110, 191, 352, 527
Hsp92II	CATG	2 cut(s)	160, 543
HspAI	GCGC	2 cut(s)	352, 460
KasI	GGCGCC	1 cut(s)	351
KroI	GCCGGC	1 cut(s)	354
KroNI	GCCGGC	1 cut(s)	356
KspI	CCGCGG	1 cut(s)	495
Kzo9I	GATC	4 cut(s)	74, 310, 360, 376
LmnI	GCTCC	3 cut(s)	37, 135, 261
Lsp1109I	GCAGC	2 cut(s)	222, 225
LweI	GCATC	1 cut(s)	18
MaeII	ACGT	3 cut(s)	110, 246, 527
MaeIII	GTNAC	2 cut(s)	184, 247
MalI	GATC	4 cut(s)	76, 312, 362, 378
MboI	GATC	4 cut(s)	74, 310, 360, 376
MboII	GAAGA	3 cut(s)	25, 154, 355
MflI	RGATCY	2 cut(s)	74, 310
MhlI	GDGCHC	2 cut(s)	42, 479
Mly113I	GGCGCC	1 cut(s)	352
MlyI	GAGTC	3 cut(s)	16, 25, 192
MmeI	TCCRAC	2 cut(s)	160, 286
MnlI	CCTC	9 cut(s)	28, 45, 88, 135, 205, 379, 391, 404, 427
MroNI	GCCGGC	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	6 cut(s)	49, 133, 152, 209, 293, 355
MspR9I	CCNGG	2 cut(s)	152, 293
MvnI	CGCG	3 cut(s)	107, 460, 494
MwoI	GCNNNNNNNGC	6 cut(s)	28, 37, 136, 214, 223, 232
NaeI	GCCGGC	1 cut(s)	356
NarI	GGCGCC	1 cut(s)	352
NciI	CCSGG	2 cut(s)	152, 293
NdeII	GATC	4 cut(s)	74, 310, 360, 376
NgoMIV	GCCGGC	1 cut(s)	354
NlaIII	CATG	2 cut(s)	160, 543
NlaIV	GGNNCC	4 cut(s)	150, 271, 325, 353
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	2 cut(s)	184, 247
NspV	TTCGAA	1 cut(s)	545
PcsI	WCGNNNNNNNCGW	2 cut(s)	116, 194
PdiI	GCCGGC	1 cut(s)	356
PfeI	GAWTC	2 cut(s)	296, 599
Pfl23II	CGTACG	1 cut(s)	328
PflFI	GACNNNGTC	3 cut(s)	158, 202, 529
PflMI	CCANNNNNTGG	1 cut(s)	100
PfoI	TCCNGGA	1 cut(s)	150
PkrI	GCNGC	7 cut(s)	106, 138, 195, 219, 237, 240, 493
PleI	GAGTC	3 cut(s)	15, 24, 191
PluTI	GGCGCC	1 cut(s)	355
PpsI	GAGTC	3 cut(s)	15, 24, 191
PspFI	CCCAGC	1 cut(s)	320
PspLI	CGTACG	1 cut(s)	328
PspN4I	GGNNCC	4 cut(s)	150, 271, 325, 353
PspPI	GGNCC	3 cut(s)	148, 160, 324
PsuI	RGATCY	2 cut(s)	74, 310
PsyI	GACNNNGTC	3 cut(s)	158, 202, 529
RsaI	GTAC	4 cut(s)	167, 276, 330, 338
RsaNI	GTAC	4 cut(s)	166, 275, 329, 337
SacII	CCGCGG	1 cut(s)	495
SalI	GTCGAC	1 cut(s)	112
SatI	GCNGC	7 cut(s)	105, 137, 194, 218, 236, 239, 492
Sau3AI	GATC	4 cut(s)	74, 310, 360, 376
Sau96I	GGNCC	3 cut(s)	148, 160, 324
SchI	GAGTC	3 cut(s)	16, 25, 192
ScrFI	CCNGG	2 cut(s)	152, 293
SduI	GDGCHC	2 cut(s)	42, 479
SfaNI	GCATC	1 cut(s)	18
SfoI	GGCGCC	1 cut(s)	353
Sfr303I	CCGCGG	1 cut(s)	495
SfuI	TTCGAA	1 cut(s)	545
SgrBI	CCGCGG	1 cut(s)	495
SgrDI	CGTCGACG	1 cut(s)	112
SinI	GGWCC	2 cut(s)	148, 160
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
SsiI	CCGC	8 cut(s)	105, 136, 194, 217, 492, 494, 510, 516
SspDI	GGCGCC	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	150, 291
TaaI	ACNGT	3 cut(s)	148, 304, 500
TaiI	ACGT	3 cut(s)	113, 249, 530
TaqI	TCGA	5 cut(s)	113, 299, 375, 390, 545
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	5 cut(s)	107, 139, 196, 220, 494
TfiI	GAWTC	2 cut(s)	296, 599
TseFI	GTSAC	2 cut(s)	184, 247
TseI	GCWGC	2 cut(s)	235, 238
Tsp45I	GTSAC	2 cut(s)	184, 247
TspDTI	ATGAA	1 cut(s)	528
TspGWI	ACGGA	1 cut(s)	361
Tth111I	GACNNNGTC	3 cut(s)	158, 202, 529
Van91I	CCANNNNNTGG	1 cut(s)	100
VpaK11BI	GGWCC	2 cut(s)	148, 160
XmiI	GTMKAC	1 cut(s)	113
ZraI	GACGTC	2 cut(s)	111, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.