RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF674 | PF05056 | 8 - 451 | 7.6e-118 | Protein of unknown function (DUF674) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 506 |
| Acc36I | ACCTGC | 1 cut(s) | 619 |
| AciI | CCGC | 1 cut(s) | 272 |
| AclWI | GGATC | 4 cut(s) | 1116, 1166, 1179, 1338 |
| AcsI | RAATTY | 3 cut(s) | 433, 637, 724 |
| AcuI | CTGAAG | 3 cut(s) | 97, 710, 859 |
| AfaI | GTAC | 3 cut(s) | 705, 1085, 1311 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 713, 935 |
| AflIII | ACRYGT | 1 cut(s) | 258 |
| AjnI | CCWGG | 4 cut(s) | 377, 497, 966, 1036 |
| Alw21I | GWGCWC | 1 cut(s) | 653 |
| Alw26I | GTCTC | 2 cut(s) | 249, 1070 |
| AlwI | GGATC | 4 cut(s) | 1116, 1166, 1179, 1338 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 919 |
| AoxI | GGCC | 3 cut(s) | 84, 765, 1262 |
| ApeKI | GCWGC | 2 cut(s) | 281, 545 |
| ApoI | RAATTY | 3 cut(s) | 433, 637, 724 |
| AspS9I | GGNCC | 2 cut(s) | 240, 765 |
| AsuHPI | GGTGA | 2 cut(s) | 470, 1199 |
| AsuNHI | GCTAGC | 1 cut(s) | 548 |
| AvaII | GGWCC | 1 cut(s) | 240 |
| BamHI | GGATCC | 1 cut(s) | 1171 |
| BanII | GRGCYC | 1 cut(s) | 653 |
| Bbv12I | GWGCWC | 1 cut(s) | 653 |
| BbvI | GCAGC | 2 cut(s) | 293, 557 |
| BccI | CCATC | 1 cut(s) | 1444 |
| BciT130I | CCWGG | 4 cut(s) | 379, 499, 968, 1038 |
| BclI | TGATCA | 1 cut(s) | 946 |
| BcoDI | GTCTC | 2 cut(s) | 249, 1070 |
| BfaI | CTAG | 3 cut(s) | 549, 1098, 1206 |
| BfuAI | ACCTGC | 1 cut(s) | 619 |
| BisI | GCNGC | 2 cut(s) | 282, 546 |
| BlpI | GCTNAGC | 1 cut(s) | 330 |
| BlsI | GCNGC | 2 cut(s) | 283, 547 |
| Bme1390I | CCNGG | 4 cut(s) | 379, 499, 968, 1038 |
| Bme18I | GGWCC | 1 cut(s) | 240 |
| BmgT120I | GGNCC | 2 cut(s) | 240, 765 |
| BmiI | GGNNCC | 4 cut(s) | 577, 766, 1173, 1434 |
| BmrFI | CCNGG | 4 cut(s) | 379, 499, 968, 1038 |
| BmsI | GCATC | 2 cut(s) | 316, 906 |
| BmtI | GCTAGC | 1 cut(s) | 552 |
| BpmI | CTGGAG | 1 cut(s) | 361 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 330 |
| BpuEI | CTTGAG | 2 cut(s) | 406, 450 |
| Bsa29I | ATCGAT | 1 cut(s) | 1439 |
| BsaI | GGTCTC | 1 cut(s) | 1070 |
| BsaJI | CCNNGG | 5 cut(s) | 498, 929, 1037, 1143, 1183 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1067, 1097 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 713, 935 |
| Bse118I | RCCGGY | 1 cut(s) | 155 |
| Bse1I | ACTGG | 1 cut(s) | 1265 |
| Bse3DI | GCAATG | 1 cut(s) | 292 |
| BseBI | CCWGG | 4 cut(s) | 379, 499, 968, 1038 |
| BseCI | ATCGAT | 1 cut(s) | 1439 |
| BseDI | CCNNGG | 5 cut(s) | 498, 929, 1037, 1143, 1183 |
| BseGI | GGATG | 2 cut(s) | 944, 1261 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 713, 935 |
| BseMI | GCAATG | 1 cut(s) | 292 |
| BseMII | CTCAG | 2 cut(s) | 321, 588 |
| BseNI | ACTGG | 1 cut(s) | 1265 |
| BseRI | GAGGAG | 2 cut(s) | 614, 1088 |
| BseXI | GCAGC | 2 cut(s) | 293, 557 |
| BsgI | GTGCAG | 2 cut(s) | 300, 564 |
| BshFI | GGCC | 3 cut(s) | 86, 767, 1264 |
| BshVI | ATCGAT | 1 cut(s) | 1439 |
| BsiHKAI | GWGCWC | 1 cut(s) | 653 |
| BsiSI | CCGG | 1 cut(s) | 156 |
| BslFI | GGGAC | 1 cut(s) | 440 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 713, 935 |
| BsmAI | GTCTC | 2 cut(s) | 249, 1070 |
| BsmFI | GGGAC | 1 cut(s) | 440 |
| BsnI | GGCC | 3 cut(s) | 86, 767, 1264 |
| Bso31I | GGTCTC | 1 cut(s) | 1070 |
| Bsp1286I | GDGCHC | 1 cut(s) | 653 |
| Bsp143I | GATC | 5 cut(s) | 870, 946, 1121, 1171, 1330 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 330 |
| Bsp19I | CCATGG | 1 cut(s) | 1183 |
| BspACI | CCGC | 1 cut(s) | 272 |
| BspANI | GGCC | 3 cut(s) | 86, 767, 1264 |
| BspCNI | CTCAG | 2 cut(s) | 322, 589 |
| BspDI | ATCGAT | 1 cut(s) | 1439 |
| BspLI | GGNNCC | 4 cut(s) | 577, 766, 1173, 1434 |
| BspMI | ACCTGC | 1 cut(s) | 619 |
| BspOI | GCTAGC | 1 cut(s) | 552 |
| BspPI | GGATC | 4 cut(s) | 1116, 1166, 1179, 1338 |
| BspTNI | GGTCTC | 1 cut(s) | 1070 |
| BsrDI | GCAATG | 1 cut(s) | 292 |
| BsrFI | RCCGGY | 1 cut(s) | 155 |
| BsrI | ACTGG | 1 cut(s) | 1265 |
| BssAI | RCCGGY | 1 cut(s) | 155 |
| BssECI | CCNNGG | 5 cut(s) | 498, 929, 1037, 1143, 1183 |
| BssMI | GATC | 5 cut(s) | 870, 946, 1121, 1171, 1330 |
| BssT1I | CCWWGG | 3 cut(s) | 929, 1143, 1183 |
| Bst2UI | CCWGG | 4 cut(s) | 379, 499, 968, 1038 |
| Bst4CI | ACNGT | 8 cut(s) | 278, 290, 342, 403, 1081, 1240, 1287, 1339 |
| Bst6I | CTCTTC | 3 cut(s) | 116, 894, 1138 |
| BstC8I | GCNNGC | 4 cut(s) | 153, 157, 495, 550 |
| BstDEI | CTNAG | 2 cut(s) | 330, 597 |
| BstDSI | CCRYGG | 1 cut(s) | 1183 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 933 |
| BstF5I | GGATG | 2 cut(s) | 944, 1261 |
| BstKTI | GATC | 5 cut(s) | 873, 949, 1124, 1174, 1333 |
| BstMAI | GTCTC | 2 cut(s) | 249, 1070 |
| BstMBI | GATC | 5 cut(s) | 870, 946, 1121, 1171, 1330 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 226, 417, 1432 |
| BstNI | CCWGG | 4 cut(s) | 379, 499, 968, 1038 |
| BstNSI | RCATGY | 4 cut(s) | 233, 252, 262, 1346 |
| BstSCI | CCNGG | 4 cut(s) | 377, 497, 966, 1036 |
| BstV1I | GCAGC | 2 cut(s) | 293, 557 |
| BstX2I | RGATCY | 2 cut(s) | 1121, 1171 |
| BstYI | RGATCY | 2 cut(s) | 1121, 1171 |
| Bsu15I | ATCGAT | 1 cut(s) | 1439 |
| BsuRI | GGCC | 3 cut(s) | 86, 767, 1264 |
| BsuTUI | ATCGAT | 1 cut(s) | 1439 |
| BtgI | CCRYGG | 1 cut(s) | 1183 |
| BtsCI | GGATG | 2 cut(s) | 944, 1261 |
| BtsIMutI | CAGTG | 4 cut(s) | 283, 594, 675, 1317 |
| BveI | ACCTGC | 1 cut(s) | 619 |
| Cac8I | GCNNGC | 4 cut(s) | 153, 157, 495, 550 |
| CaiI | CAGNNNCTG | 1 cut(s) | 919 |
| Cfr10I | RCCGGY | 1 cut(s) | 155 |
| Cfr13I | GGNCC | 2 cut(s) | 240, 765 |
| ClaI | ATCGAT | 1 cut(s) | 1439 |
| CseI | GACGC | 1 cut(s) | 1355 |
| Csp6I | GTAC | 3 cut(s) | 704, 1084, 1310 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 810, 845 |
| CviAII | CATG | 7 cut(s) | 190, 230, 249, 259, 430, 1184, 1343 |
| CviQI | GTAC | 3 cut(s) | 704, 1084, 1310 |
| DdeI | CTNAG | 2 cut(s) | 330, 597 |
| DpnI | GATC | 5 cut(s) | 872, 948, 1123, 1173, 1332 |
| DpnII | GATC | 5 cut(s) | 870, 946, 1121, 1171, 1330 |
| Eam1104I | CTCTTC | 3 cut(s) | 116, 894, 1138 |
| EarI | CTCTTC | 3 cut(s) | 116, 894, 1138 |
| Ecl136II | GAGCTC | 1 cut(s) | 651 |
| Eco130I | CCWWGG | 3 cut(s) | 929, 1143, 1183 |
| Eco24I | GRGCYC | 1 cut(s) | 653 |
| Eco31I | GGTCTC | 1 cut(s) | 1070 |
| Eco47I | GGWCC | 1 cut(s) | 240 |
| Eco53kI | GAGCTC | 1 cut(s) | 651 |
| Eco57I | CTGAAG | 3 cut(s) | 97, 710, 859 |
| EcoICRI | GAGCTC | 1 cut(s) | 651 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 933 |
| EcoO109I | RGGNCCY | 1 cut(s) | 765 |
| EcoRI | GAATTC | 1 cut(s) | 433 |
| EcoRII | CCWGG | 4 cut(s) | 377, 497, 966, 1036 |
| EcoT14I | CCWWGG | 3 cut(s) | 929, 1143, 1183 |
| EcoT22I | ATGCAT | 1 cut(s) | 250 |
| EcoT38I | GRGCYC | 1 cut(s) | 653 |
| ErhI | CCWWGG | 3 cut(s) | 929, 1143, 1183 |
| FaeI | CATG | 7 cut(s) | 193, 233, 252, 262, 433, 1187, 1346 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 432, 464 |
| FaqI | GGGAC | 1 cut(s) | 440 |
| FatI | CATG | 7 cut(s) | 189, 229, 248, 258, 429, 1183, 1342 |
| FbaI | TGATCA | 1 cut(s) | 946 |
| Fnu4HI | GCNGC | 2 cut(s) | 282, 546 |
| FokI | GGATG | 2 cut(s) | 951, 1268 |
| FriOI | GRGCYC | 1 cut(s) | 653 |
| Fsp4HI | GCNGC | 2 cut(s) | 282, 546 |
| FspBI | CTAG | 3 cut(s) | 549, 1098, 1206 |
| GluI | GCNGC | 2 cut(s) | 282, 546 |
| GsuI | CTGGAG | 1 cut(s) | 361 |
| HaeIII | GGCC | 3 cut(s) | 86, 767, 1264 |
| HapII | CCGG | 1 cut(s) | 156 |
| HgaI | GACGC | 1 cut(s) | 1355 |
| Hin1II | CATG | 7 cut(s) | 193, 233, 252, 262, 433, 1187, 1346 |
| HincII | GTYRAC | 1 cut(s) | 1110 |
| HindII | GTYRAC | 1 cut(s) | 1110 |
| HindIII | AAGCTT | 3 cut(s) | 218, 569, 1091 |
| HinfI | GANTC | 7 cut(s) | 461, 621, 749, 886, 923, 1212, 1394 |
| HpaI | GTTAAC | 1 cut(s) | 1110 |
| HpaII | CCGG | 1 cut(s) | 156 |
| HphI | GGTGA | 2 cut(s) | 470, 1199 |
| Hpy166II | GTNNAC | 4 cut(s) | 52, 564, 1084, 1110 |
| Hpy188I | TCNGA | 3 cut(s) | 19, 454, 1393 |
| Hpy188III | TCNNGA | 2 cut(s) | 121, 883 |
| Hpy8I | GTNNAC | 4 cut(s) | 52, 564, 1084, 1110 |
| HpyAV | CCTTC | 3 cut(s) | 34, 366, 1300 |
| HpyCH4III | ACNGT | 8 cut(s) | 278, 290, 342, 403, 1081, 1240, 1287, 1339 |
| HpyCH4IV | ACGT | 2 cut(s) | 303, 1139 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 226, 417, 1432 |
| HpyF3I | CTNAG | 2 cut(s) | 330, 597 |
| HpySE526I | ACGT | 2 cut(s) | 303, 1139 |
| Hsp92II | CATG | 7 cut(s) | 193, 233, 252, 262, 433, 1187, 1346 |
| KroI | GCCGGC | 1 cut(s) | 155 |
| KroNI | GCCGGC | 1 cut(s) | 157 |
| Ksp22I | TGATCA | 1 cut(s) | 946 |
| KspAI | GTTAAC | 1 cut(s) | 1110 |
| Kzo9I | GATC | 5 cut(s) | 870, 946, 1121, 1171, 1330 |
| LmnI | GCTCC | 3 cut(s) | 575, 601, 1432 |
| Lsp1109I | GCAGC | 2 cut(s) | 293, 557 |
| LweI | GCATC | 2 cut(s) | 316, 906 |
| MaeI | CTAG | 3 cut(s) | 549, 1098, 1206 |
| MaeII | ACGT | 2 cut(s) | 303, 1139 |
| MaeIII | GTNAC | 2 cut(s) | 264, 1240 |
| MalI | GATC | 5 cut(s) | 872, 948, 1123, 1173, 1332 |
| MboI | GATC | 5 cut(s) | 870, 946, 1121, 1171, 1330 |
| MboII | GAAGA | 5 cut(s) | 37, 103, 865, 881, 1125 |
| MflI | RGATCY | 2 cut(s) | 1121, 1171 |
| MhlI | GDGCHC | 1 cut(s) | 653 |
| MlyI | GAGTC | 3 cut(s) | 630, 880, 1388 |
| MmeI | TCCRAC | 1 cut(s) | 451 |
| Mph1103I | ATGCAT | 1 cut(s) | 250 |
| MroNI | GCCGGC | 1 cut(s) | 155 |
| MspI | CCGG | 1 cut(s) | 156 |
| MspR9I | CCNGG | 4 cut(s) | 379, 499, 968, 1038 |
| MvaI | CCWGG | 4 cut(s) | 379, 499, 968, 1038 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 226, 417, 1432 |
| NaeI | GCCGGC | 1 cut(s) | 157 |
| NcoI | CCATGG | 1 cut(s) | 1183 |
| NdeII | GATC | 5 cut(s) | 870, 946, 1121, 1171, 1330 |
| NgoMIV | GCCGGC | 1 cut(s) | 155 |
| NheI | GCTAGC | 1 cut(s) | 548 |
| NlaIII | CATG | 7 cut(s) | 193, 233, 252, 262, 433, 1187, 1346 |
| NlaIV | GGNNCC | 4 cut(s) | 577, 766, 1173, 1434 |
| NsiI | ATGCAT | 1 cut(s) | 250 |
| NspI | RCATGY | 4 cut(s) | 233, 252, 262, 1346 |
| PciI | ACATGT | 1 cut(s) | 258 |
| PdiI | GCCGGC | 1 cut(s) | 157 |
| PfeI | GAWTC | 4 cut(s) | 461, 749, 923, 1212 |
| PfoI | TCCNGGA | 1 cut(s) | 966 |
| PkrI | GCNGC | 2 cut(s) | 283, 547 |
| PleI | GAGTC | 3 cut(s) | 629, 880, 1388 |
| PpsI | GAGTC | 3 cut(s) | 629, 880, 1388 |
| PscI | ACATGT | 1 cut(s) | 258 |
| PsiI | TTATAA | 1 cut(s) | 506 |
| Psp124BI | GAGCTC | 1 cut(s) | 653 |
| Psp6I | CCWGG | 4 cut(s) | 377, 497, 966, 1036 |
| PspGI | CCWGG | 4 cut(s) | 377, 497, 966, 1036 |
| PspN4I | GGNNCC | 4 cut(s) | 577, 766, 1173, 1434 |
| PspPI | GGNCC | 2 cut(s) | 240, 765 |
| PstNI | CAGNNNCTG | 1 cut(s) | 919 |
| PsuI | RGATCY | 2 cut(s) | 1121, 1171 |
| RsaI | GTAC | 3 cut(s) | 705, 1085, 1311 |
| RsaNI | GTAC | 3 cut(s) | 704, 1084, 1310 |
| SacI | GAGCTC | 1 cut(s) | 653 |
| SatI | GCNGC | 2 cut(s) | 282, 546 |
| Sau3AI | GATC | 5 cut(s) | 870, 946, 1121, 1171, 1330 |
| Sau96I | GGNCC | 2 cut(s) | 240, 765 |
| SchI | GAGTC | 3 cut(s) | 630, 880, 1388 |
| ScrFI | CCNGG | 4 cut(s) | 379, 499, 968, 1038 |
| SduI | GDGCHC | 1 cut(s) | 653 |
| SfaNI | GCATC | 2 cut(s) | 316, 906 |
| SinI | GGWCC | 1 cut(s) | 240 |
| SmlI | CTYRAG | 2 cut(s) | 421, 465 |
| SmoI | CTYRAG | 2 cut(s) | 421, 465 |
| SsiI | CCGC | 1 cut(s) | 272 |
| SspMI | CTAG | 3 cut(s) | 549, 1098, 1206 |
| SstI | GAGCTC | 1 cut(s) | 653 |
| StyD4I | CCNGG | 4 cut(s) | 377, 497, 966, 1036 |
| StyI | CCWWGG | 3 cut(s) | 929, 1143, 1183 |
| TaaI | ACNGT | 8 cut(s) | 278, 290, 342, 403, 1081, 1240, 1287, 1339 |
| TaiI | ACGT | 2 cut(s) | 306, 1142 |
| TaqI | TCGA | 4 cut(s) | 624, 770, 1333, 1439 |
| TatI | WGTACW | 1 cut(s) | 1083 |
| TfiI | GAWTC | 4 cut(s) | 461, 749, 923, 1212 |
| TscAI | CASTG | 4 cut(s) | 283, 601, 682, 1324 |
| TseI | GCWGC | 2 cut(s) | 281, 545 |
| TspDTI | ATGAA | 4 cut(s) | 88, 206, 446, 1065 |
| TspGWI | ACGGA | 1 cut(s) | 1435 |
| TspRI | CASTG | 4 cut(s) | 283, 601, 682, 1324 |
| VpaK11BI | GGWCC | 1 cut(s) | 240 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 933 |
| XapI | RAATTY | 3 cut(s) | 433, 637, 724 |
| XceI | RCATGY | 4 cut(s) | 233, 252, 262, 1346 |
| XspI | CTAG | 3 cut(s) | 549, 1098, 1206 |
| Zsp2I | ATGCAT | 1 cut(s) | 250 |