Rmu_sc0011641.1_g000003

Lignin degradation and detoxification of lignin-derived products

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011641.1
Physical Location & Seq
Forward (+)
6970 .. 12649
5680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011641.1_g000003.1.cds

Sequence Viewer

Length: 2670 bp
atgaacggtgaaacccccccaaatactaacccgaaacccacctttgcttctgtactcgcaagtgagaatccactggggtttgacattgacgacctccctgtgccttcagttgaggatggcgtcgtcacagtccaaattacagaggagccattcctgcgcggccttgatcgctgcaaaacaatccttgtagggaaacttctgtcgcctccgaatggggttatgcccaaagcccatgagctagcgcaaaggctgcggctggtttggcatagcatatcgaattggtcagtagccccattgggtaaggggtttttcatgctgcaattccaaaccctagatgatatgcagcgcatttggtcaatgggttctataaatttaaatccggggatattgaggttgatcaaatggacacctacgttctcaccctcgacgtacagaaacacttttgcacagatttgggtacgtttttgggatttaggttttgcatattgggaccaccagaccttgtttgagattgcacggggtgttggcacgccaatcaaactggacgccaggactgccaacagatctttgggtctatatgccagagtgctcgttgatgttgatctctcaaagccattatgtgatcacattagagttgctcgctcacacggggacgctgtaactgctaaggttgagtatgagtcaataccagtgctctgtcaggtatgtggacttgttggtcactctgctaataagtgcaagaatacatctcctccacctgatgaatcaatgcctgatgaatcaatgcctgtgaaccggggacgctctctgacccgctcccattctgcacggaaaaggcagcggtcgcgccgccgttcaaagcgcaagacagtgcatcccgcccctgtggtggaggtagagtctgctccgccactggatacctccgcagtacaggtgattgatgaggttgcgcagatagttgcgaatgtggaaccggttttggaattggttaacaaggacgtaagtatggctagctcttctactgcttccgtcccaccaggttttaccaaagttcaaaagctggaggttgttgatcagtctaagccagctgacctggctctgtctaataatttggtaagtgaagagctggaagtttcctcgtctggaggggtagttggcgccctagaagagggagaatttattccagttgtttccaaaaaagtaatgaagcttgcaaagcagtctgaaaaggctaaagtaaagctcaaacctggtactaaaaggccggtcctacagaaaggggccaaacacaaattgcatgggattcgacagcttcaaaccgggtgggctgatggtccggcatacattactcaatgcccgatacaaaccggcaacaactatgtgtataactttaccattataggccaaagaggcacgctttggtggcatgctcacatttcatggctaagatcaaccatctatggccccttaatcattcttcccaagcgtggtgttccttatccatttaccaaaccctacaaggaagttcccatcatctttggagaatggtggaatgtggatcctgaagcagtcataaaccaggccctgcagactgggggaggaccaaatgtttctgatgcttataccattaatggcctcccaggacctttgtataactgctctgccaaagatacattcaagcttaaggttcaagctgggaagacataccttctgcgcttgatcaatgcagcactgaacgacgaacttttcttcagcattgcaaatcataccctcaaagtagtcgaaacagacgctgtttatgttaagccctttgacaccaacaccattctcattgccccgggacaaaccacaaatgttcttctcaaaaccaagcctaacttcccaaatgccacatttctcatgaccgcaaggccatacgtgactggtctaggcacctttgacaactccactgttgctgccattctagagtacgaaacgactacgcttcactcaatcctcccattgaacaaacttccgctccacaaaccaattctcccggctcaaaatgacacatcgtttgcaacaaagttcgccagcaaactccgcagcttaaacactccagagttcccagcgaacgtcccgcagaaagttgacaagcgtttgttcttcacaataggacttggaaccaacccatgtagccagcagcagcacaacaaccaaacctgccaaggacccaatggaaccatgtttgctgcttcaatcaacaacgtttcttttactatgccaaacactgccttactccaatcccacttttctggccgatcaaagggagtttattcccctgactttccgatcagcccttcaattccatttaattacacaggggcccagctgaacaatactaatgtgagcaatggtacaaaacttatgatgcttccgtttaacactagtgtggagttggtgctgcaagacactagtattcttggtgctgaaagccatcctcttcatcttcatggattcaacttctttgttgttggtcaagggtttggcaactttgaccagaattatgaccctaggaagttcaatctggttgaccccgttgaaagaaacacggtgagtgtgccctctggtgggtgggttgccattcggtttctagcagataacccaggtaaaaacattataaaccgatag

Protein Analysis

889

Amino Acids

97.92

Weight (kDa)

9.24

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2660
AasI GACNNNNNNGTC 1 cut(s) 717
Acc16I TGCGCA 1 cut(s) 951
Acc36I ACCTGC 1 cut(s) 2210
AccB1I GGYRCC 2 cut(s) 1157, 1931
AccBSI CCGCTC 2 cut(s) 816, 2017
AccII CGCG 2 cut(s) 159, 847
AclI AACGTT 1 cut(s) 2247
AclWI GGATC 2 cut(s) 1553, 1566
AcoI YGGCCR 1 cut(s) 2296
AcsI RAATTY 2 cut(s) 370, 1175
AcuI CTGAAG 3 cut(s) 90, 1584, 1735
AcyI GRCGYC 3 cut(s) 120, 546, 1158
AdeI CACNNNGTG 1 cut(s) 521
AfaI GTAC 7 cut(s) 54, 431, 459, 930, 1255, 1970, 2398
AfiI CCNNNNNNNGG 7 cut(s) 212, 889, 1168, 1487, 2305, 2609, 2610
AflII CTTAAG 1 cut(s) 1682
AgeI ACCGGT 1 cut(s) 973
AhlI ACTAGT 2 cut(s) 2426, 2453
AjnI CCWGG 7 cut(s) 548, 1036, 1092, 1249, 1578, 1639, 2644
AjuI GAANNNNNNNTTGG 4 cut(s) 1658, 1690, 1862, 1894
AleI CACNNNNGTG 1 cut(s) 2429
Alw21I GWGCWC 2 cut(s) 591, 696
AlwI GGATC 2 cut(s) 1553, 1566
AlwNI CAGNNNCTG 2 cut(s) 1585, 1793
Ama87I CYCGRG 1 cut(s) 1837
ApaI GGGCCC 1 cut(s) 2368
ApoI RAATTY 2 cut(s) 370, 1175
ArsI GACNNNNNNTTYG 2 cut(s) 2039, 2071
AseI ATTAAT 1 cut(s) 1629
AsiGI ACCGGT 1 cut(s) 973
Asp700I GAANNNNTTC 1 cut(s) 1179
AspA2I CCTAGG 1 cut(s) 2552
AspLEI GCGC 8 cut(s) 159, 244, 348, 849, 864, 952, 1160, 1716
AsuC2I CCSGG 6 cut(s) 381, 797, 1321, 1838, 1839, 2036
AsuHPI GGTGA 4 cut(s) 20, 411, 946, 2605
AsuNHI GCTAGC 2 cut(s) 238, 1010
AvaI CYCGRG 1 cut(s) 1837
AvaII GGWCC 6 cut(s) 490, 1267, 1334, 1601, 1643, 2210
AvrII CCTAGG 1 cut(s) 2552
BaeGI GKGCMC 2 cut(s) 2368, 2604
BamHI GGATCC 1 cut(s) 1558
BanI GGYRCC 2 cut(s) 1157, 1931
BanII GRGCYC 1 cut(s) 2368
BarI GAAGNNNNNNTAC 2 cut(s) 180, 212
BbsI GAAGAC 1 cut(s) 1706
Bbv12I GWGCWC 2 cut(s) 591, 696
BccI CCATC 5 cut(s) 110, 1325, 1463, 1538, 2484
BceAI ACGGC 1 cut(s) 837
BcgI CGANNNNNNTGC 2 cut(s) 1286, 1320
BciT130I CCWGG 7 cut(s) 550, 1038, 1094, 1251, 1580, 1641, 2646
BciVI GTATCC 1 cut(s) 910
BclI TGATCA 4 cut(s) 396, 622, 1072, 1719
BcnI CCSGG 6 cut(s) 381, 797, 1321, 1838, 1839, 2036
BcuI ACTAGT 2 cut(s) 2426, 2453
BfmI CTRYAG 2 cut(s) 1271, 1586
BfoI RGCGCY 1 cut(s) 1161
BfrI CTTAAG 1 cut(s) 1682
BfuAI ACCTGC 1 cut(s) 2210
BfuI GTATCC 1 cut(s) 910
BglI GCCNNNNNGGC 1 cut(s) 1410
BglII AGATCT 1 cut(s) 563
BlnI CCTAGG 1 cut(s) 2552
Bme18I GGWCC 6 cut(s) 490, 1267, 1334, 1601, 1643, 2210
BmeT110I CYCGRG 1 cut(s) 1837
BmrI ACTGGG 2 cut(s) 83, 1602
BmsI GCATC 3 cut(s) 883, 1606, 2400
BmtI GCTAGC 2 cut(s) 242, 1014
BmuI ACTGGG 2 cut(s) 83, 1602
BpiI GAAGAC 1 cut(s) 1706
BpmI CTGGAG 3 cut(s) 1082, 1164, 2082
Bpu10I CCTNAGC 1 cut(s) 666
BpuMI CCSGG 6 cut(s) 381, 797, 1321, 1838, 1839, 2036
BsaAI YACGTR 1 cut(s) 1918
BsaBI GATNNNNATC 1 cut(s) 600
BsaHI GRCGYC 3 cut(s) 120, 546, 1158
BsaJI CCNNGG 8 cut(s) 380, 796, 1639, 1836, 1837, 2206, 2552, 2644
BsaWI WCCGGW 1 cut(s) 973
Bsc4I CCNNNNNNNGG 7 cut(s) 212, 889, 1168, 1487, 2305, 2609, 2610
Bse118I RCCGGY 3 cut(s) 973, 1264, 1367
Bse1I ACTGG 7 cut(s) 78, 546, 689, 918, 1184, 1597, 1927
Bse3DI GCAATG 3 cut(s) 1755, 1830, 2398
Bse8I GATNNNNATC 1 cut(s) 600
BseBI CCWGG 7 cut(s) 550, 1038, 1094, 1251, 1580, 1641, 2646
BseDI CCNNGG 8 cut(s) 380, 796, 1639, 1836, 1837, 2206, 2552, 2644
BseGI GGATG 3 cut(s) 121, 874, 2476
BseJI GATNNNNATC 1 cut(s) 600
BseLI CCNNNNNNNGG 7 cut(s) 212, 889, 1168, 1487, 2305, 2609, 2610
BseMI GCAATG 3 cut(s) 1755, 1830, 2398
BseNI ACTGG 7 cut(s) 78, 546, 689, 918, 1184, 1597, 1927
BseRI GAGGAG 2 cut(s) 158, 741
BseSI GKGCMC 2 cut(s) 2368, 2604
BseYI CCCAGC 3 cut(s) 1694, 2107, 2367
BsgI GTGCAG 1 cut(s) 810
Bsh1236I CGCG 2 cut(s) 159, 847
Bsh1285I CGRYCG 1 cut(s) 845
BshNI GGYRCC 2 cut(s) 1157, 1931
BshTI ACCGGT 1 cut(s) 973
BsiEI CGRYCG 1 cut(s) 845
BsiHKAI GWGCWC 2 cut(s) 591, 696
BsiHKCI CYCGRG 1 cut(s) 1837
BsiSI CCGG 9 cut(s) 380, 796, 974, 1265, 1320, 1337, 1368, 1838, 2036
BslFI GGGAC 6 cut(s) 503, 665, 813, 1016, 1854, 2102
BslI CCNNNNNNNGG 7 cut(s) 212, 889, 1168, 1487, 2305, 2609, 2610
BsmFI GGGAC 6 cut(s) 503, 665, 813, 1016, 1854, 2102
BsoBI CYCGRG 1 cut(s) 1837
Bsp120I GGGCCC 1 cut(s) 2364
Bsp1286I GDGCHC 4 cut(s) 591, 696, 2368, 2604
BspFNI CGCG 2 cut(s) 159, 847
BspHI TCATGA 1 cut(s) 1899
BspMAI CTGCAG 1 cut(s) 1590
BspMI ACCTGC 1 cut(s) 2210
BspOI GCTAGC 2 cut(s) 242, 1014
BspPI GGATC 2 cut(s) 1553, 1566
BspQI GCTCTTC 2 cut(s) 1021, 1116
BspT107I GGYRCC 2 cut(s) 1157, 1931
BspTI CTTAAG 1 cut(s) 1682
BsrBI CCGCTC 2 cut(s) 816, 2017
BsrDI GCAATG 3 cut(s) 1755, 1830, 2398
BsrFI RCCGGY 3 cut(s) 973, 1264, 1367
BsrI ACTGG 7 cut(s) 78, 546, 689, 918, 1184, 1597, 1927
BssAI RCCGGY 3 cut(s) 973, 1264, 1367
BssECI CCNNGG 8 cut(s) 380, 796, 1639, 1836, 1837, 2206, 2552, 2644
BssNI GRCGYC 3 cut(s) 120, 546, 1158
BssT1I CCWWGG 2 cut(s) 2206, 2552
Bst2UI CCWGG 7 cut(s) 550, 1038, 1094, 1251, 1580, 1641, 2646
Bst4CI ACNGT 5 cut(s) 8, 130, 871, 1951, 2593
Bst6I CTCTTC 4 cut(s) 1021, 1116, 1161, 2487
BstACI GRCGYC 3 cut(s) 120, 546, 1158
BstAFI CTTAAG 1 cut(s) 1682
BstAPI GCANNNNNTGC 1 cut(s) 250
BstBAI YACGTR 1 cut(s) 1918
BstDEI CTNAG 3 cut(s) 666, 1080, 1445
BstENI CCTNNNNNAGG 1 cut(s) 1166
BstF5I GGATG 3 cut(s) 121, 874, 2476
BstFNI CGCG 2 cut(s) 159, 847
BstH2I RGCGCY 1 cut(s) 1161
BstHHI GCGC 8 cut(s) 159, 244, 348, 849, 864, 952, 1160, 1716
BstMCI CGRYCG 1 cut(s) 845
BstNI CCWGG 7 cut(s) 550, 1038, 1094, 1251, 1580, 1641, 2646
BstNSI RCATGY 1 cut(s) 1430
BstSFI CTRYAG 2 cut(s) 1271, 1586
BstSLI GKGCMC 2 cut(s) 2368, 2604
BstUI CGCG 2 cut(s) 159, 847
BstV2I GAAGAC 1 cut(s) 1706
BstX2I RGATCY 2 cut(s) 563, 1558
BstXI CCANNNNNNTGG 1 cut(s) 2294
BstYI RGATCY 2 cut(s) 563, 1558
BsuI GTATCC 1 cut(s) 910
BtsCI GGATG 3 cut(s) 121, 874, 2476
BtsI GCAGTG 1 cut(s) 2268
BtsIMutI CAGTG 7 cut(s) 71, 696, 876, 911, 1730, 1947, 2268
BveI ACCTGC 1 cut(s) 2210
CaiI CAGNNNCTG 2 cut(s) 1585, 1793
CciI TCATGA 1 cut(s) 1899
CfoI GCGC 8 cut(s) 159, 244, 348, 849, 864, 952, 1160, 1716
Cfr10I RCCGGY 3 cut(s) 973, 1264, 1367
Cfr9I CCCGGG 1 cut(s) 1837
CseI GACGC 5 cut(s) 109, 554, 662, 810, 1799
CsiI ACCWGGT 2 cut(s) 1036, 1249
Csp6I GTAC 7 cut(s) 53, 430, 458, 929, 1254, 1969, 2397
CspAI ACCGGT 1 cut(s) 973
CspCI CAANNNNNGTGG 2 cut(s) 1304, 1339
CviAII CATG 9 cut(s) 233, 313, 1298, 1427, 1440, 1900, 2172, 2224, 2492
CviQI GTAC 7 cut(s) 53, 430, 458, 929, 1254, 1969, 2397
DdeI CTNAG 3 cut(s) 666, 1080, 1445
DinI GGCGCC 1 cut(s) 1159
DraI TTTAAA 1 cut(s) 375
DraIII CACNNNGTG 1 cut(s) 521
DrdI GACNNNNNNGTC 1 cut(s) 717
DseDI GACNNNNNNGTC 1 cut(s) 717
EaeI YGGCCR 1 cut(s) 2296
Eam1104I CTCTTC 4 cut(s) 1021, 1116, 1161, 2487
EarI CTCTTC 4 cut(s) 1021, 1116, 1161, 2487
EciI GGCGGA 1 cut(s) 897
Eco130I CCWWGG 2 cut(s) 2206, 2552
Eco24I GRGCYC 1 cut(s) 2368
Eco47I GGWCC 6 cut(s) 490, 1267, 1334, 1601, 1643, 2210
Eco57I CTGAAG 3 cut(s) 90, 1584, 1735
Eco88I CYCGRG 1 cut(s) 1837
EcoNI CCTNNNNNAGG 1 cut(s) 1166
EcoO109I RGGNCCY 4 cut(s) 1582, 1643, 2210, 2364
EcoRII CCWGG 7 cut(s) 548, 1036, 1092, 1249, 1578, 1639, 2644
EcoT14I CCWWGG 2 cut(s) 2206, 2552
EcoT38I GRGCYC 1 cut(s) 2368
EgeI GGCGCC 1 cut(s) 1159
EheI GGCGCC 1 cut(s) 1159
ErhI CCWWGG 2 cut(s) 2206, 2552
FaeI CATG 9 cut(s) 236, 316, 1301, 1430, 1443, 1903, 2175, 2227, 2495
FalI AAGNNNNNCTT 2 cut(s) 1862, 1894
FaqI GGGAC 6 cut(s) 503, 665, 813, 1016, 1854, 2102
FatI CATG 9 cut(s) 232, 312, 1297, 1426, 1439, 1899, 2171, 2223, 2491
FauI CCCGC 3 cut(s) 821, 886, 2127
FbaI TGATCA 4 cut(s) 396, 622, 1072, 1719
FokI GGATG 3 cut(s) 128, 861, 2463
FriOI GRGCYC 1 cut(s) 2368
FspI TGCGCA 1 cut(s) 951
GlaI GCGC 8 cut(s) 158, 243, 347, 848, 863, 951, 1159, 1715
GsaI CCCAGC 3 cut(s) 1698, 2111, 2371
GsuI CTGGAG 3 cut(s) 1082, 1164, 2082
HaeII RGCGCY 1 cut(s) 1161
HapII CCGG 9 cut(s) 380, 796, 974, 1265, 1320, 1337, 1368, 1838, 2036
HgaI GACGC 5 cut(s) 109, 554, 662, 810, 1799
HhaI GCGC 8 cut(s) 159, 244, 348, 849, 864, 952, 1160, 1716
Hin1I GRCGYC 3 cut(s) 120, 546, 1158
Hin1II CATG 9 cut(s) 236, 316, 1301, 1430, 1443, 1903, 2175, 2227, 2495
Hin6I GCGC 8 cut(s) 157, 242, 346, 847, 862, 950, 1158, 1714
HinP1I GCGC 8 cut(s) 157, 242, 346, 847, 862, 950, 1158, 1714
HincII GTYRAC 3 cut(s) 991, 2131, 2572
HindII GTYRAC 3 cut(s) 991, 2131, 2572
HindIII AAGCTT 2 cut(s) 1208, 1679
HinfI GANTC 7 cut(s) 67, 680, 764, 779, 899, 1303, 2496
HpaI GTTAAC 1 cut(s) 991
HpaII CCGG 9 cut(s) 380, 796, 974, 1265, 1320, 1337, 1368, 1838, 2036
HphI GGTGA 4 cut(s) 20, 411, 946, 2605
Hpy166II GTNNAC 5 cut(s) 710, 793, 991, 2131, 2572
Hpy188I TCNGA 5 cut(s) 210, 810, 1225, 1615, 2331
Hpy188III TCNNGA 5 cut(s) 1143, 1562, 1900, 1964, 2099
Hpy8I GTNNAC 5 cut(s) 710, 793, 991, 2131, 2572
Hpy99I CGWCG 3 cut(s) 125, 430, 1742
HpyAV CCTTC 3 cut(s) 114, 1718, 2349
HpyCH4III ACNGT 5 cut(s) 8, 130, 871, 1951, 2593
HpyCH4IV ACGT 7 cut(s) 413, 428, 460, 999, 1917, 2115, 2247
HpyF3I CTNAG 3 cut(s) 666, 1080, 1445
HpySE526I ACGT 7 cut(s) 413, 428, 460, 999, 1917, 2115, 2247
Hsp92I GRCGYC 3 cut(s) 120, 546, 1158
Hsp92II CATG 9 cut(s) 236, 316, 1301, 1430, 1443, 1903, 2175, 2227, 2495
HspAI GCGC 8 cut(s) 157, 242, 346, 847, 862, 950, 1158, 1714
KasI GGCGCC 1 cut(s) 1157
Ksp22I TGATCA 4 cut(s) 396, 622, 1072, 1719
KspAI GTTAAC 1 cut(s) 991
LguI GCTCTTC 2 cut(s) 1021, 1116
LmnI GCTCC 4 cut(s) 145, 821, 910, 2022
LweI GCATC 3 cut(s) 883, 1606, 2400
MabI ACCWGGT 2 cut(s) 1036, 1249
MaeII ACGT 7 cut(s) 413, 428, 460, 999, 1917, 2115, 2247
MaeIII GTNAC 4 cut(s) 124, 658, 719, 1918
MbiI CCGCTC 2 cut(s) 816, 2017
MflI RGATCY 2 cut(s) 563, 1558
MhlI GDGCHC 4 cut(s) 591, 696, 2368, 2604
Mly113I GGCGCC 1 cut(s) 1158
MlyI GAGTC 2 cut(s) 689, 908
MroXI GAANNNNTTC 1 cut(s) 1179
MseI TTAA 9 cut(s) 374, 990, 1469, 1629, 1683, 1803, 2090, 2352, 2421
MslI CAYNNNNRTG 2 cut(s) 2429, 2490
MspA1I CMGCKG 3 cut(s) 841, 1088, 2371
MspCI CTTAAG 1 cut(s) 1682
MspI CCGG 9 cut(s) 380, 796, 974, 1265, 1320, 1337, 1368, 1838, 2036
MvaI CCWGG 7 cut(s) 550, 1038, 1094, 1251, 1580, 1641, 2646
MvnI CGCG 2 cut(s) 159, 847
NarI GGCGCC 1 cut(s) 1158
NciI CCSGG 6 cut(s) 381, 797, 1321, 1838, 1839, 2036
NheI GCTAGC 2 cut(s) 238, 1010
NlaIII CATG 9 cut(s) 236, 316, 1301, 1430, 1443, 1903, 2175, 2227, 2495
NmuCI GTSAC 3 cut(s) 124, 719, 1918
NsbI TGCGCA 1 cut(s) 951
NspI RCATGY 1 cut(s) 1430
OliI CACNNNNGTG 1 cut(s) 2429
PaeI GCATGC 1 cut(s) 1430
PagI TCATGA 1 cut(s) 1899
PciSI GCTCTTC 2 cut(s) 1021, 1116
PdmI GAANNNNTTC 1 cut(s) 1179
PfeI GAWTC 5 cut(s) 67, 764, 779, 1303, 2496
PinAI ACCGGT 1 cut(s) 973
PleI GAGTC 2 cut(s) 688, 907
PluTI GGCGCC 1 cut(s) 1161
PpsI GAGTC 2 cut(s) 688, 907
Ppu21I YACGTR 1 cut(s) 1918
PpuMI RGGWCCY 2 cut(s) 1643, 2210
PshBI ATTAAT 1 cut(s) 1629
PsiI TTATAA 1 cut(s) 2660
Psp1406I AACGTT 1 cut(s) 2247
Psp5II RGGWCCY 2 cut(s) 1643, 2210
Psp6I CCWGG 7 cut(s) 548, 1036, 1092, 1249, 1578, 1639, 2644
PspFI CCCAGC 3 cut(s) 1694, 2107, 2367
PspGI CCWGG 7 cut(s) 548, 1036, 1092, 1249, 1578, 1639, 2644
PspOMI GGGCCC 1 cut(s) 2364
PspPPI RGGWCCY 2 cut(s) 1643, 2210
PstI CTGCAG 1 cut(s) 1590
PstNI CAGNNNCTG 2 cut(s) 1585, 1793
PsuI RGATCY 2 cut(s) 563, 1558
PvuII CAGCTG 2 cut(s) 1088, 2371
RsaI GTAC 7 cut(s) 54, 431, 459, 930, 1255, 1970, 2398
RsaNI GTAC 7 cut(s) 53, 430, 458, 929, 1254, 1969, 2397
RseI CAYNNNNRTG 2 cut(s) 2429, 2490
SapI GCTCTTC 2 cut(s) 1021, 1116
SaqAI TTAA 9 cut(s) 374, 990, 1469, 1629, 1683, 1803, 2090, 2352, 2421
SchI GAGTC 2 cut(s) 689, 908
SduI GDGCHC 4 cut(s) 591, 696, 2368, 2604
SexAI ACCWGGT 2 cut(s) 1036, 1249
SfaNI GCATC 3 cut(s) 883, 1606, 2400
SfcI CTRYAG 2 cut(s) 1271, 1586
SfoI GGCGCC 1 cut(s) 1159
SinI GGWCC 6 cut(s) 490, 1267, 1334, 1601, 1643, 2210
SmaI CCCGGG 1 cut(s) 1839
SmiI ATTTAAAT 1 cut(s) 375
SmiMI CAYNNNNRTG 2 cut(s) 2429, 2490
SmlI CTYRAG 1 cut(s) 1682
SmoI CTYRAG 1 cut(s) 1682
SpeI ACTAGT 2 cut(s) 2426, 2453
SphI GCATGC 1 cut(s) 1430
SspDI GGCGCC 1 cut(s) 1157
StyI CCWWGG 2 cut(s) 2206, 2552
SwaI ATTTAAAT 1 cut(s) 375
TaaI ACNGT 5 cut(s) 8, 130, 871, 1951, 2593
TaiI ACGT 7 cut(s) 416, 431, 463, 1002, 1920, 2118, 2250
TaqI TCGA 4 cut(s) 275, 425, 1306, 1782
TatI WGTACW 2 cut(s) 52, 928
TauI GCSGC 3 cut(s) 162, 256, 852
TfiI GAWTC 5 cut(s) 67, 764, 779, 1303, 2496
Tru1I TTAA 9 cut(s) 374, 990, 1469, 1629, 1683, 1803, 2090, 2352, 2421
Tru9I TTAA 9 cut(s) 374, 990, 1469, 1629, 1683, 1803, 2090, 2352, 2421
TscAI CASTG 7 cut(s) 78, 696, 876, 918, 1737, 1954, 2275
TseFI GTSAC 3 cut(s) 124, 719, 1918
Tsp45I GTSAC 3 cut(s) 124, 719, 1918
TspDTI ATGAA 8 cut(s) 17, 301, 777, 792, 1220, 1428, 2474, 2480
TspGWI ACGGA 3 cut(s) 844, 1018, 2406
TspMI CCCGGG 1 cut(s) 1837
TspRI CASTG 7 cut(s) 78, 696, 876, 918, 1737, 1954, 2275
Vha464I CTTAAG 1 cut(s) 1682
VpaK11BI GGWCC 6 cut(s) 490, 1267, 1334, 1601, 1643, 2210
VspI ATTAAT 1 cut(s) 1629
XagI CCTNNNNNAGG 1 cut(s) 1166
XapI RAATTY 2 cut(s) 370, 1175
XbaI TCTAGA 1 cut(s) 1963
XceI RCATGY 1 cut(s) 1430
XcmI CCANNNNNNNNNTGG 2 cut(s) 565, 2213
XmaI CCCGGG 1 cut(s) 1837
XmaJI CCTAGG 1 cut(s) 2552
XmnI GAANNNNTTC 1 cut(s) 1179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.