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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 3 cut(s) | 275, 459, 579 |
| AccII | CGCG | 1 cut(s) | 66 |
| AciI | CCGC | 2 cut(s) | 78, 96 |
| AclWI | GGATC | 2 cut(s) | 12, 155 |
| AcoI | YGGCCR | 1 cut(s) | 115 |
| AcsI | RAATTY | 1 cut(s) | 35 |
| AfaI | GTAC | 3 cut(s) | 198, 297, 303 |
| AflII | CTTAAG | 1 cut(s) | 635 |
| AflIII | ACRYGT | 1 cut(s) | 671 |
| AgsI | TTSAA | 1 cut(s) | 655 |
| AhlI | ACTAGT | 1 cut(s) | 19 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 500, 532 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 581, 613 |
| AluBI | AGCT | 4 cut(s) | 467, 631, 644, 721 |
| AluI | AGCT | 4 cut(s) | 467, 631, 644, 721 |
| Alw21I | GWGCWC | 1 cut(s) | 318 |
| Alw26I | GTCTC | 1 cut(s) | 616 |
| AlwI | GGATC | 2 cut(s) | 12, 155 |
| AoxI | GGCC | 1 cut(s) | 115 |
| ApeKI | GCWGC | 6 cut(s) | 68, 260, 451, 631, 644, 665 |
| ApoI | RAATTY | 1 cut(s) | 35 |
| AspLEI | GCGC | 2 cut(s) | 68, 216 |
| AsuHPI | GGTGA | 2 cut(s) | 157, 216 |
| AxyI | CCTNAGG | 1 cut(s) | 660 |
| BalI | TGGCCA | 1 cut(s) | 117 |
| Bbv12I | GWGCWC | 1 cut(s) | 318 |
| BbvI | GCAGC | 6 cut(s) | 55, 247, 463, 618, 631, 677 |
| BccI | CCATC | 4 cut(s) | 328, 358, 415, 550 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 265, 295, 299, 329 |
| BcoDI | GTCTC | 1 cut(s) | 616 |
| BcuI | ACTAGT | 1 cut(s) | 19 |
| BfaI | CTAG | 2 cut(s) | 20, 497 |
| BfmI | CTRYAG | 1 cut(s) | 411 |
| BfoI | RGCGCY | 1 cut(s) | 217 |
| BfrI | CTTAAG | 1 cut(s) | 635 |
| BisI | GCNGC | 6 cut(s) | 69, 261, 452, 632, 645, 666 |
| BlsI | GCNGC | 6 cut(s) | 70, 262, 453, 633, 646, 667 |
| BmrI | ACTGGG | 1 cut(s) | 159 |
| BmsI | GCATC | 1 cut(s) | 247 |
| BmuI | ACTGGG | 1 cut(s) | 159 |
| BoxI | GACNNNNGTC | 1 cut(s) | 360 |
| BpmI | CTGGAG | 1 cut(s) | 588 |
| Bpu10I | CCTNAGC | 1 cut(s) | 468 |
| Bsa29I | ATCGAT | 1 cut(s) | 321 |
| BsaAI | YACGTR | 1 cut(s) | 674 |
| Bse1I | ACTGG | 7 cut(s) | 165, 220, 287, 299, 311, 399, 605 |
| Bse21I | CCTNAGG | 1 cut(s) | 660 |
| BseCI | ATCGAT | 1 cut(s) | 321 |
| BseMII | CTCAG | 1 cut(s) | 482 |
| BseNI | ACTGG | 7 cut(s) | 165, 220, 287, 299, 311, 399, 605 |
| BseXI | GCAGC | 6 cut(s) | 55, 247, 463, 618, 631, 677 |
| Bsh1236I | CGCG | 1 cut(s) | 66 |
| BshFI | GGCC | 1 cut(s) | 117 |
| BshVI | ATCGAT | 1 cut(s) | 321 |
| BsiHKAI | GWGCWC | 1 cut(s) | 318 |
| BslFI | GGGAC | 2 cut(s) | 155, 348 |
| BsmAI | GTCTC | 1 cut(s) | 616 |
| BsmBI | CGTCTC | 1 cut(s) | 616 |
| BsmFI | GGGAC | 2 cut(s) | 155, 348 |
| BsnI | GGCC | 1 cut(s) | 117 |
| Bsp1286I | GDGCHC | 1 cut(s) | 318 |
| Bsp143I | GATC | 4 cut(s) | 4, 48, 61, 160 |
| BspACI | CCGC | 2 cut(s) | 78, 96 |
| BspANI | GGCC | 1 cut(s) | 117 |
| BspCNI | CTCAG | 1 cut(s) | 481 |
| BspDI | ATCGAT | 1 cut(s) | 321 |
| BspFNI | CGCG | 1 cut(s) | 66 |
| BspPI | GGATC | 2 cut(s) | 12, 155 |
| BspTI | CTTAAG | 1 cut(s) | 635 |
| BsrI | ACTGG | 7 cut(s) | 165, 220, 287, 299, 311, 399, 605 |
| BssMI | GATC | 4 cut(s) | 4, 48, 61, 160 |
| BstAFI | CTTAAG | 1 cut(s) | 635 |
| BstBAI | YACGTR | 1 cut(s) | 674 |
| BstC8I | GCNNGC | 1 cut(s) | 642 |
| BstDEI | CTNAG | 4 cut(s) | 58, 468, 485, 660 |
| BstFNI | CGCG | 1 cut(s) | 66 |
| BstH2I | RGCGCY | 1 cut(s) | 217 |
| BstHHI | GCGC | 2 cut(s) | 68, 216 |
| BstKTI | GATC | 4 cut(s) | 7, 51, 64, 163 |
| BstMAI | GTCTC | 1 cut(s) | 616 |
| BstMBI | GATC | 4 cut(s) | 4, 48, 61, 160 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 77, 637 |
| BstNSI | RCATGY | 1 cut(s) | 236 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 360 |
| BstSFI | CTRYAG | 1 cut(s) | 411 |
| BstUI | CGCG | 1 cut(s) | 66 |
| BstV1I | GCAGC | 6 cut(s) | 55, 247, 463, 618, 631, 677 |
| Bsu15I | ATCGAT | 1 cut(s) | 321 |
| Bsu36I | CCTNAGG | 1 cut(s) | 660 |
| BsuRI | GGCC | 1 cut(s) | 117 |
| BsuTUI | ATCGAT | 1 cut(s) | 321 |
| BtsIMutI | CAGTG | 4 cut(s) | 172, 294, 318, 693 |
| Cac8I | GCNNGC | 1 cut(s) | 642 |
| CfoI | GCGC | 2 cut(s) | 68, 216 |
| ClaI | ATCGAT | 1 cut(s) | 321 |
| CseI | GACGC | 1 cut(s) | 195 |
| Csp6I | GTAC | 3 cut(s) | 197, 296, 302 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 270, 305 |
| CviAII | CATG | 6 cut(s) | 119, 233, 331, 403, 421, 574 |
| CviQI | GTAC | 3 cut(s) | 197, 296, 302 |
| DdeI | CTNAG | 4 cut(s) | 58, 468, 485, 660 |
| DpnI | GATC | 4 cut(s) | 6, 50, 63, 162 |
| DpnII | GATC | 4 cut(s) | 4, 48, 61, 160 |
| EaeI | YGGCCR | 1 cut(s) | 115 |
| Eco81I | CCTNAGG | 1 cut(s) | 660 |
| Esp3I | CGTCTC | 1 cut(s) | 616 |
| FaeI | CATG | 6 cut(s) | 122, 236, 334, 406, 424, 577 |
| FaqI | GGGAC | 2 cut(s) | 155, 348 |
| FatI | CATG | 6 cut(s) | 118, 232, 330, 402, 420, 573 |
| FauI | CCCGC | 1 cut(s) | 85 |
| FblI | GTMKAC | 3 cut(s) | 275, 459, 579 |
| Fnu4HI | GCNGC | 6 cut(s) | 69, 261, 452, 632, 645, 666 |
| Fsp4HI | GCNGC | 6 cut(s) | 69, 261, 452, 632, 645, 666 |
| FspBI | CTAG | 2 cut(s) | 20, 497 |
| GlaI | GCGC | 2 cut(s) | 67, 215 |
| GluI | GCNGC | 6 cut(s) | 69, 261, 452, 632, 645, 666 |
| GsuI | CTGGAG | 1 cut(s) | 588 |
| HaeII | RGCGCY | 1 cut(s) | 217 |
| HaeIII | GGCC | 1 cut(s) | 117 |
| HgaI | GACGC | 1 cut(s) | 195 |
| HhaI | GCGC | 2 cut(s) | 68, 216 |
| Hin1II | CATG | 6 cut(s) | 122, 236, 334, 406, 424, 577 |
| Hin6I | GCGC | 2 cut(s) | 66, 214 |
| HinP1I | GCGC | 2 cut(s) | 66, 214 |
| HincII | GTYRAC | 2 cut(s) | 276, 571 |
| HindII | GTYRAC | 2 cut(s) | 276, 571 |
| HindIII | AAGCTT | 1 cut(s) | 719 |
| HinfI | GANTC | 2 cut(s) | 272, 277 |
| HpaI | GTTAAC | 1 cut(s) | 571 |
| HphI | GGTGA | 2 cut(s) | 157, 216 |
| Hpy166II | GTNNAC | 5 cut(s) | 276, 460, 571, 580, 600 |
| Hpy188I | TCNGA | 3 cut(s) | 355, 507, 547 |
| Hpy188III | TCNNGA | 2 cut(s) | 269, 380 |
| Hpy8I | GTNNAC | 5 cut(s) | 276, 460, 571, 580, 600 |
| HpyAV | CCTTC | 1 cut(s) | 584 |
| HpyCH4IV | ACGT | 2 cut(s) | 199, 673 |
| HpyCH4V | TGCA | 4 cut(s) | 341, 424, 451, 647 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 77, 637 |
| HpyF3I | CTNAG | 4 cut(s) | 58, 468, 485, 660 |
| HpySE526I | ACGT | 2 cut(s) | 199, 673 |
| Hsp92II | CATG | 6 cut(s) | 122, 236, 334, 406, 424, 577 |
| HspAI | GCGC | 2 cut(s) | 66, 214 |
| KspAI | GTTAAC | 1 cut(s) | 571 |
| Kzo9I | GATC | 4 cut(s) | 4, 48, 61, 160 |
| Lsp1109I | GCAGC | 6 cut(s) | 55, 247, 463, 618, 631, 677 |
| LweI | GCATC | 1 cut(s) | 247 |
| MaeI | CTAG | 2 cut(s) | 20, 497 |
| MaeII | ACGT | 2 cut(s) | 199, 673 |
| MaeIII | GTNAC | 1 cut(s) | 222 |
| MalI | GATC | 4 cut(s) | 6, 50, 63, 162 |
| MboI | GATC | 4 cut(s) | 4, 48, 61, 160 |
| MhlI | GDGCHC | 1 cut(s) | 318 |
| MlsI | TGGCCA | 1 cut(s) | 117 |
| MluCI | AATT | 1 cut(s) | 35 |
| MluNI | TGGCCA | 1 cut(s) | 117 |
| MlyI | GAGTC | 2 cut(s) | 271, 281 |
| MmeI | TCCRAC | 1 cut(s) | 370 |
| MnlI | CCTC | 6 cut(s) | 148, 176, 337, 487, 504, 580 |
| Mox20I | TGGCCA | 1 cut(s) | 117 |
| MscI | TGGCCA | 1 cut(s) | 117 |
| MseI | TTAA | 2 cut(s) | 570, 636 |
| Msp20I | TGGCCA | 1 cut(s) | 117 |
| MspCI | CTTAAG | 1 cut(s) | 635 |
| MvnI | CGCG | 1 cut(s) | 66 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 77, 637 |
| NdeII | GATC | 4 cut(s) | 4, 48, 61, 160 |
| NlaIII | CATG | 6 cut(s) | 122, 236, 334, 406, 424, 577 |
| NmuCI | GTSAC | 1 cut(s) | 222 |
| NspI | RCATGY | 1 cut(s) | 236 |
| PkrI | GCNGC | 6 cut(s) | 70, 262, 453, 633, 646, 667 |
| PleI | GAGTC | 2 cut(s) | 271, 280 |
| PpsI | GAGTC | 2 cut(s) | 271, 280 |
| Ppu21I | YACGTR | 1 cut(s) | 674 |
| PshAI | GACNNNNGTC | 1 cut(s) | 360 |
| RsaI | GTAC | 3 cut(s) | 198, 297, 303 |
| RsaNI | GTAC | 3 cut(s) | 197, 296, 302 |
| SalI | GTCGAC | 1 cut(s) | 274 |
| SaqAI | TTAA | 2 cut(s) | 570, 636 |
| SatI | GCNGC | 6 cut(s) | 69, 261, 452, 632, 645, 666 |
| Sau3AI | GATC | 4 cut(s) | 4, 48, 61, 160 |
| SchI | GAGTC | 2 cut(s) | 271, 281 |
| SduI | GDGCHC | 1 cut(s) | 318 |
| SfaNI | GCATC | 1 cut(s) | 247 |
| SfcI | CTRYAG | 1 cut(s) | 411 |
| SmlI | CTYRAG | 1 cut(s) | 635 |
| SmoI | CTYRAG | 1 cut(s) | 635 |
| SpeI | ACTAGT | 1 cut(s) | 19 |
| Sse9I | AATT | 1 cut(s) | 35 |
| SsiI | CCGC | 2 cut(s) | 78, 96 |
| SspMI | CTAG | 2 cut(s) | 20, 497 |
| TaiI | ACGT | 2 cut(s) | 202, 676 |
| TaqI | TCGA | 2 cut(s) | 275, 321 |
| TasI | AATT | 1 cut(s) | 35 |
| Tru1I | TTAA | 2 cut(s) | 570, 636 |
| Tru9I | TTAA | 2 cut(s) | 570, 636 |
| TscAI | CASTG | 4 cut(s) | 172, 294, 318, 693 |
| TseFI | GTSAC | 1 cut(s) | 222 |
| TseI | GCWGC | 6 cut(s) | 68, 260, 451, 631, 644, 665 |
| Tsp45I | GTSAC | 1 cut(s) | 222 |
| TspDTI | ATGAA | 2 cut(s) | 79, 564 |
| TspRI | CASTG | 4 cut(s) | 172, 294, 318, 693 |
| Vha464I | CTTAAG | 1 cut(s) | 635 |
| XapI | RAATTY | 1 cut(s) | 35 |
| XceI | RCATGY | 1 cut(s) | 236 |
| XmiI | GTMKAC | 3 cut(s) | 275, 459, 579 |
| XspI | CTAG | 2 cut(s) | 20, 497 |