Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 86 - 119 | 2e-07 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 298 |
| AciI | CCGC | 2 cut(s) | 248, 298 |
| AcsI | RAATTY | 2 cut(s) | 98, 144 |
| AgsI | TTSAA | 1 cut(s) | 98 |
| AluBI | AGCT | 3 cut(s) | 358, 406, 460 |
| AluI | AGCT | 3 cut(s) | 358, 406, 460 |
| Alw21I | GWGCWC | 1 cut(s) | 317 |
| ApoI | RAATTY | 2 cut(s) | 98, 144 |
| AspA2I | CCTAGG | 1 cut(s) | 88 |
| AspS9I | GGNCC | 1 cut(s) | 85 |
| AsuHPI | GGTGA | 2 cut(s) | 85, 388 |
| AvaII | GGWCC | 1 cut(s) | 85 |
| AvrII | CCTAGG | 1 cut(s) | 88 |
| BaeGI | GKGCMC | 1 cut(s) | 455 |
| BbsI | GAAGAC | 1 cut(s) | 395 |
| Bbv12I | GWGCWC | 1 cut(s) | 317 |
| BccI | CCATC | 1 cut(s) | 413 |
| BceAI | ACGGC | 1 cut(s) | 381 |
| BfaI | CTAG | 4 cut(s) | 89, 237, 416, 466 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 420 |
| BisI | GCNGC | 1 cut(s) | 299 |
| BlnI | CCTAGG | 1 cut(s) | 88 |
| BlsI | GCNGC | 1 cut(s) | 300 |
| Bme18I | GGWCC | 1 cut(s) | 85 |
| BmgT120I | GGNCC | 1 cut(s) | 85 |
| BmiI | GGNNCC | 2 cut(s) | 86, 108 |
| BoxI | GACNNNNGTC | 1 cut(s) | 90 |
| BpiI | GAAGAC | 1 cut(s) | 395 |
| BpuEI | CTTGAG | 1 cut(s) | 48 |
| BsaJI | CCNNGG | 4 cut(s) | 26, 88, 372, 397 |
| Bse3DI | GCAATG | 1 cut(s) | 334 |
| BseDI | CCNNGG | 4 cut(s) | 26, 88, 372, 397 |
| BseMI | GCAATG | 1 cut(s) | 334 |
| BseSI | GKGCMC | 1 cut(s) | 455 |
| BsiHKAI | GWGCWC | 1 cut(s) | 317 |
| BslFI | GGGAC | 1 cut(s) | 98 |
| BsmFI | GGGAC | 1 cut(s) | 98 |
| BsmI | GAATGC | 1 cut(s) | 64 |
| Bsp1286I | GDGCHC | 2 cut(s) | 317, 455 |
| Bsp143I | GATC | 2 cut(s) | 175, 229 |
| Bsp19I | CCATGG | 1 cut(s) | 372 |
| BspACI | CCGC | 2 cut(s) | 248, 298 |
| BspLI | GGNNCC | 2 cut(s) | 86, 108 |
| BsrBI | CCGCTC | 1 cut(s) | 298 |
| BsrDI | GCAATG | 1 cut(s) | 334 |
| BssECI | CCNNGG | 4 cut(s) | 26, 88, 372, 397 |
| BssMI | GATC | 2 cut(s) | 175, 229 |
| BssT1I | CCWWGG | 2 cut(s) | 88, 372 |
| Bst6I | CTCTTC | 1 cut(s) | 378 |
| BstDSI | CCRYGG | 3 cut(s) | 26, 372, 397 |
| BstKTI | GATC | 2 cut(s) | 178, 232 |
| BstMBI | GATC | 2 cut(s) | 175, 229 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 364, 420 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 90 |
| BstSLI | GKGCMC | 1 cut(s) | 455 |
| BstV2I | GAAGAC | 1 cut(s) | 395 |
| BtgI | CCRYGG | 3 cut(s) | 26, 372, 397 |
| Cfr13I | GGNCC | 1 cut(s) | 85 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 99, 134 |
| CviAII | CATG | 3 cut(s) | 55, 274, 373 |
| CviJI | RGCY | 6 cut(s) | 190, 301, 358, 406, 414, 460 |
| CviKI_1 | RGCY | 6 cut(s) | 190, 301, 358, 406, 414, 460 |
| DpnI | GATC | 2 cut(s) | 177, 231 |
| DpnII | GATC | 2 cut(s) | 175, 229 |
| Eam1104I | CTCTTC | 1 cut(s) | 378 |
| EarI | CTCTTC | 1 cut(s) | 378 |
| Eco130I | CCWWGG | 2 cut(s) | 88, 372 |
| Eco47I | GGWCC | 1 cut(s) | 85 |
| EcoO109I | RGGNCCY | 1 cut(s) | 85 |
| EcoRI | GAATTC | 1 cut(s) | 144 |
| EcoT14I | CCWWGG | 2 cut(s) | 88, 372 |
| ErhI | CCWWGG | 2 cut(s) | 88, 372 |
| FaeI | CATG | 3 cut(s) | 58, 277, 376 |
| FaqI | GGGAC | 1 cut(s) | 98 |
| FatI | CATG | 3 cut(s) | 54, 273, 372 |
| Fnu4HI | GCNGC | 1 cut(s) | 299 |
| Fsp4HI | GCNGC | 1 cut(s) | 299 |
| FspBI | CTAG | 4 cut(s) | 89, 237, 416, 466 |
| GluI | GCNGC | 1 cut(s) | 299 |
| Hin1II | CATG | 3 cut(s) | 58, 277, 376 |
| HindIII | AAGCTT | 1 cut(s) | 356 |
| HinfI | GANTC | 2 cut(s) | 76, 391 |
| HphI | GGTGA | 2 cut(s) | 85, 388 |
| Hpy188I | TCNGA | 2 cut(s) | 13, 443 |
| Hpy188III | TCNNGA | 1 cut(s) | 95 |
| HpyCH4IV | ACGT | 1 cut(s) | 170 |
| HpyCH4V | TGCA | 1 cut(s) | 197 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 364, 420 |
| HpySE526I | ACGT | 1 cut(s) | 170 |
| Hsp92II | CATG | 3 cut(s) | 58, 277, 376 |
| Kzo9I | GATC | 2 cut(s) | 175, 229 |
| LpnPI | CCDG | 2 cut(s) | 364, 377 |
| MaeI | CTAG | 4 cut(s) | 89, 237, 416, 466 |
| MaeII | ACGT | 1 cut(s) | 170 |
| MaeIII | GTNAC | 2 cut(s) | 343, 376 |
| MalI | GATC | 2 cut(s) | 177, 231 |
| MbiI | CCGCTC | 1 cut(s) | 298 |
| MboI | GATC | 2 cut(s) | 175, 229 |
| MboII | GAAGA | 3 cut(s) | 224, 395, 400 |
| MfeI | CAATTG | 1 cut(s) | 225 |
| MhlI | GDGCHC | 2 cut(s) | 317, 455 |
| MluCI | AATT | 4 cut(s) | 98, 138, 144, 225 |
| MlyI | GAGTC | 1 cut(s) | 385 |
| MnlI | CCTC | 3 cut(s) | 262, 277, 327 |
| MslI | CAYNNNNRTG | 1 cut(s) | 310 |
| MunI | CAATTG | 1 cut(s) | 225 |
| Mva1269I | GAATGC | 1 cut(s) | 64 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 364, 420 |
| NcoI | CCATGG | 1 cut(s) | 372 |
| NdeII | GATC | 2 cut(s) | 175, 229 |
| NlaIII | CATG | 3 cut(s) | 58, 277, 376 |
| NlaIV | GGNNCC | 2 cut(s) | 86, 108 |
| NmuCI | GTSAC | 1 cut(s) | 376 |
| PctI | GAATGC | 1 cut(s) | 64 |
| PfeI | GAWTC | 1 cut(s) | 76 |
| PkrI | GCNGC | 1 cut(s) | 300 |
| PleI | GAGTC | 1 cut(s) | 385 |
| PpsI | GAGTC | 1 cut(s) | 385 |
| PpuMI | RGGWCCY | 1 cut(s) | 85 |
| PshAI | GACNNNNGTC | 1 cut(s) | 90 |
| Psp5II | RGGWCCY | 1 cut(s) | 85 |
| PspN4I | GGNNCC | 2 cut(s) | 86, 108 |
| PspPI | GGNCC | 1 cut(s) | 85 |
| PspPPI | RGGWCCY | 1 cut(s) | 85 |
| RseI | CAYNNNNRTG | 1 cut(s) | 310 |
| SatI | GCNGC | 1 cut(s) | 299 |
| Sau3AI | GATC | 2 cut(s) | 175, 229 |
| Sau96I | GGNCC | 1 cut(s) | 85 |
| SchI | GAGTC | 1 cut(s) | 385 |
| SduI | GDGCHC | 2 cut(s) | 317, 455 |
| SetI | ASST | 8 cut(s) | 90, 94, 173, 273, 288, 360, 408, 462 |
| SinI | GGWCC | 1 cut(s) | 85 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 310 |
| SmlI | CTYRAG | 1 cut(s) | 63 |
| SmoI | CTYRAG | 1 cut(s) | 63 |
| Sse9I | AATT | 4 cut(s) | 98, 138, 144, 225 |
| SsiI | CCGC | 2 cut(s) | 248, 298 |
| SspMI | CTAG | 4 cut(s) | 89, 237, 416, 466 |
| StyI | CCWWGG | 2 cut(s) | 88, 372 |
| TaiI | ACGT | 1 cut(s) | 173 |
| TaqI | TCGA | 2 cut(s) | 178, 408 |
| TasI | AATT | 4 cut(s) | 98, 138, 144, 225 |
| TauI | GCSGC | 1 cut(s) | 301 |
| TfiI | GAWTC | 1 cut(s) | 76 |
| TseFI | GTSAC | 1 cut(s) | 376 |
| Tsp45I | GTSAC | 1 cut(s) | 376 |
| TspDTI | ATGAA | 4 cut(s) | 71, 150, 179, 294 |
| TspGWI | ACGGA | 1 cut(s) | 15 |
| VpaK11BI | GGWCC | 1 cut(s) | 85 |
| XapI | RAATTY | 2 cut(s) | 98, 144 |
| XmaJI | CCTAGG | 1 cut(s) | 88 |
| XspI | CTAG | 4 cut(s) | 89, 237, 416, 466 |