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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 111 |
| AclI | AACGTT | 1 cut(s) | 303 |
| AclWI | GGATC | 4 cut(s) | 142, 259, 272, 565 |
| AdeI | CACNNNGTG | 1 cut(s) | 829 |
| AfaI | GTAC | 4 cut(s) | 596, 623, 808, 890 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 220, 261, 818, 819, 922 |
| AgsI | TTSAA | 5 cut(s) | 191, 293, 482, 871, 922 |
| AhlI | ACTAGT | 1 cut(s) | 647 |
| AjnI | CCWGG | 1 cut(s) | 514 |
| AluBI | AGCT | 4 cut(s) | 65, 244, 344, 451 |
| AluI | AGCT | 4 cut(s) | 65, 244, 344, 451 |
| Alw21I | GWGCWC | 1 cut(s) | 647 |
| Alw26I | GTCTC | 3 cut(s) | 100, 752, 933 |
| Alw44I | GTGCAC | 1 cut(s) | 643 |
| AlwI | GGATC | 4 cut(s) | 142, 259, 272, 565 |
| AoxI | GGCC | 4 cut(s) | 141, 195, 205, 913 |
| ApaLI | GTGCAC | 1 cut(s) | 643 |
| ApeKI | GCWGC | 5 cut(s) | 29, 485, 608, 664, 946 |
| AspS9I | GGNCC | 2 cut(s) | 141, 205 |
| AsuHPI | GGTGA | 2 cut(s) | 484, 508 |
| BaeGI | GKGCMC | 2 cut(s) | 647, 825 |
| BamHI | GGATCC | 1 cut(s) | 264 |
| BauI | CACGAG | 1 cut(s) | 846 |
| Bbv12I | GWGCWC | 1 cut(s) | 647 |
| BbvI | GCAGC | 5 cut(s) | 41, 497, 595, 676, 958 |
| BccI | CCATC | 6 cut(s) | 77, 78, 152, 158, 448, 704 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 163, 197 |
| BciT130I | CCWGG | 1 cut(s) | 516 |
| BcoDI | GTCTC | 3 cut(s) | 100, 752, 933 |
| BcuI | ACTAGT | 1 cut(s) | 647 |
| BfaI | CTAG | 2 cut(s) | 345, 648 |
| BfmI | CTRYAG | 1 cut(s) | 39 |
| BisI | GCNGC | 5 cut(s) | 30, 486, 609, 665, 947 |
| BlsI | GCNGC | 5 cut(s) | 31, 487, 610, 666, 948 |
| Bme1390I | CCNGG | 1 cut(s) | 516 |
| BmgT120I | GGNCC | 2 cut(s) | 141, 205 |
| BmiI | GGNNCC | 2 cut(s) | 157, 266 |
| BmrFI | CCNGG | 1 cut(s) | 516 |
| BmrI | ACTGGG | 1 cut(s) | 826 |
| BmsI | GCATC | 7 cut(s) | 740, 758, 773, 808, 850, 891, 933 |
| BmuI | ACTGGG | 1 cut(s) | 826 |
| BpmI | CTGGAG | 1 cut(s) | 738 |
| BpuEI | CTTGAG | 2 cut(s) | 509, 622 |
| BsaBI | GATNNNNATC | 1 cut(s) | 695 |
| BsaI | GGTCTC | 1 cut(s) | 100 |
| BsaJI | CCNNGG | 1 cut(s) | 895 |
| BsaWI | WCCGGW | 1 cut(s) | 885 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 375, 405, 531, 561 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 220, 261, 818, 819, 922 |
| Bse1I | ACTGG | 2 cut(s) | 157, 821 |
| Bse3DI | GCAATG | 1 cut(s) | 636 |
| Bse8I | GATNNNNATC | 1 cut(s) | 695 |
| BseBI | CCWGG | 1 cut(s) | 516 |
| BseDI | CCNNGG | 1 cut(s) | 895 |
| BseGI | GGATG | 1 cut(s) | 906 |
| BseJI | GATNNNNATC | 1 cut(s) | 695 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 220, 261, 818, 819, 922 |
| BseMI | GCAATG | 1 cut(s) | 636 |
| BseMII | CTCAG | 3 cut(s) | 71, 136, 840 |
| BseNI | ACTGG | 2 cut(s) | 157, 821 |
| BseRI | GAGGAG | 2 cut(s) | 350, 552 |
| BseSI | GKGCMC | 2 cut(s) | 647, 825 |
| BseXI | GCAGC | 5 cut(s) | 41, 497, 595, 676, 958 |
| BsgI | GTGCAG | 1 cut(s) | 851 |
| BshFI | GGCC | 4 cut(s) | 143, 197, 207, 915 |
| BsiHKAI | GWGCWC | 1 cut(s) | 647 |
| BsiSI | CCGG | 1 cut(s) | 886 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 220, 261, 818, 819, 922 |
| BsmAI | GTCTC | 3 cut(s) | 100, 752, 933 |
| BsmBI | CGTCTC | 1 cut(s) | 752 |
| BsmI | GAATGC | 1 cut(s) | 877 |
| BsnI | GGCC | 4 cut(s) | 143, 197, 207, 915 |
| Bso31I | GGTCTC | 1 cut(s) | 100 |
| Bsp1286I | GDGCHC | 2 cut(s) | 647, 825 |
| Bsp1407I | TGTACA | 1 cut(s) | 594 |
| Bsp143I | GATC | 4 cut(s) | 134, 264, 309, 557 |
| BspACI | CCGC | 1 cut(s) | 111 |
| BspANI | GGCC | 4 cut(s) | 143, 197, 207, 915 |
| BspCNI | CTCAG | 3 cut(s) | 72, 135, 839 |
| BspLI | GGNNCC | 2 cut(s) | 157, 266 |
| BspPI | GGATC | 4 cut(s) | 142, 259, 272, 565 |
| BspTNI | GGTCTC | 1 cut(s) | 100 |
| BsrDI | GCAATG | 1 cut(s) | 636 |
| BsrGI | TGTACA | 1 cut(s) | 594 |
| BsrI | ACTGG | 2 cut(s) | 157, 821 |
| BssECI | CCNNGG | 1 cut(s) | 895 |
| BssMI | GATC | 4 cut(s) | 134, 264, 309, 557 |
| BssSI | CACGAG | 1 cut(s) | 846 |
| BssT1I | CCWWGG | 1 cut(s) | 895 |
| Bst2BI | CACGAG | 1 cut(s) | 846 |
| Bst2UI | CCWGG | 1 cut(s) | 516 |
| Bst4CI | ACNGT | 1 cut(s) | 601 |
| Bst6I | CTCTTC | 1 cut(s) | 527 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 783, 829 |
| BstAUI | TGTACA | 1 cut(s) | 594 |
| BstC8I | GCNNGC | 2 cut(s) | 775, 877 |
| BstDEI | CTNAG | 4 cut(s) | 80, 122, 423, 826 |
| BstF5I | GGATG | 1 cut(s) | 906 |
| BstKTI | GATC | 4 cut(s) | 137, 267, 312, 560 |
| BstMAI | GTCTC | 3 cut(s) | 100, 752, 933 |
| BstMBI | GATC | 4 cut(s) | 134, 264, 309, 557 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 407, 617, 626, 774, 783, 829 |
| BstNI | CCWGG | 1 cut(s) | 516 |
| BstSCI | CCNGG | 1 cut(s) | 514 |
| BstSFI | CTRYAG | 1 cut(s) | 39 |
| BstSLI | GKGCMC | 2 cut(s) | 647, 825 |
| BstV1I | GCAGC | 5 cut(s) | 41, 497, 595, 676, 958 |
| BstX2I | RGATCY | 3 cut(s) | 134, 264, 557 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 703 |
| BstYI | RGATCY | 3 cut(s) | 134, 264, 557 |
| BsuRI | GGCC | 4 cut(s) | 143, 197, 207, 915 |
| BtsCI | GGATG | 1 cut(s) | 906 |
| BtsI | GCAGTG | 1 cut(s) | 839 |
| BtsIMutI | CAGTG | 6 cut(s) | 150, 159, 597, 689, 834, 839 |
| Cac8I | GCNNGC | 2 cut(s) | 775, 877 |
| Cfr13I | GGNCC | 2 cut(s) | 141, 205 |
| Csp6I | GTAC | 4 cut(s) | 595, 622, 807, 889 |
| CviAII | CATG | 4 cut(s) | 97, 260, 269, 434 |
| CviQI | GTAC | 4 cut(s) | 595, 622, 807, 889 |
| DdeI | CTNAG | 4 cut(s) | 80, 122, 423, 826 |
| DpnI | GATC | 4 cut(s) | 136, 266, 311, 559 |
| DpnII | GATC | 4 cut(s) | 134, 264, 309, 557 |
| DraIII | CACNNNGTG | 1 cut(s) | 829 |
| Eam1104I | CTCTTC | 1 cut(s) | 527 |
| EarI | CTCTTC | 1 cut(s) | 527 |
| Eco130I | CCWWGG | 1 cut(s) | 895 |
| Eco31I | GGTCTC | 1 cut(s) | 100 |
| EcoO109I | RGGNCCY | 1 cut(s) | 205 |
| EcoRII | CCWGG | 1 cut(s) | 514 |
| EcoT14I | CCWWGG | 1 cut(s) | 895 |
| EcoT22I | ATGCAT | 3 cut(s) | 788, 865, 964 |
| ErhI | CCWWGG | 1 cut(s) | 895 |
| Esp3I | CGTCTC | 1 cut(s) | 752 |
| FaeI | CATG | 4 cut(s) | 100, 263, 272, 437 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 609, 641 |
| FatI | CATG | 4 cut(s) | 96, 259, 268, 433 |
| FauI | CCCGC | 1 cut(s) | 118 |
| Fnu4HI | GCNGC | 5 cut(s) | 30, 486, 609, 665, 947 |
| FokI | GGATG | 1 cut(s) | 913 |
| Fsp4HI | GCNGC | 5 cut(s) | 30, 486, 609, 665, 947 |
| FspBI | CTAG | 2 cut(s) | 345, 648 |
| GluI | GCNGC | 5 cut(s) | 30, 486, 609, 665, 947 |
| GsuI | CTGGAG | 1 cut(s) | 738 |
| HaeIII | GGCC | 4 cut(s) | 143, 197, 207, 915 |
| HapII | CCGG | 1 cut(s) | 886 |
| Hin1II | CATG | 4 cut(s) | 100, 263, 272, 437 |
| HincII | GTYRAC | 2 cut(s) | 394, 550 |
| HindII | GTYRAC | 2 cut(s) | 394, 550 |
| HindIII | AAGCTT | 1 cut(s) | 63 |
| HinfI | GANTC | 5 cut(s) | 118, 363, 511, 691, 926 |
| HpaI | GTTAAC | 1 cut(s) | 394 |
| HpaII | CCGG | 1 cut(s) | 886 |
| HphI | GGTGA | 2 cut(s) | 484, 508 |
| Hpy166II | GTNNAC | 6 cut(s) | 394, 475, 550, 597, 645, 807 |
| Hpy188I | TCNGA | 4 cut(s) | 81, 125, 690, 933 |
| Hpy188III | TCNNGA | 4 cut(s) | 298, 526, 742, 755 |
| Hpy8I | GTNNAC | 6 cut(s) | 394, 475, 550, 597, 645, 807 |
| HpyAV | CCTTC | 4 cut(s) | 353, 591, 748, 916 |
| HpyCH4III | ACNGT | 1 cut(s) | 601 |
| HpyCH4IV | ACGT | 2 cut(s) | 303, 761 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 407, 617, 626, 774, 783, 829 |
| HpyF3I | CTNAG | 4 cut(s) | 80, 122, 423, 826 |
| HpySE526I | ACGT | 2 cut(s) | 303, 761 |
| Hsp92II | CATG | 4 cut(s) | 100, 263, 272, 437 |
| KspAI | GTTAAC | 1 cut(s) | 394 |
| Kzo9I | GATC | 4 cut(s) | 134, 264, 309, 557 |
| LmnI | GCTCC | 3 cut(s) | 161, 448, 539 |
| LpnPI | CCDG | 9 cut(s) | 138, 387, 501, 528, 546, 768, 802, 870, 899 |
| Lsp1109I | GCAGC | 5 cut(s) | 41, 497, 595, 676, 958 |
| LweI | GCATC | 7 cut(s) | 740, 758, 773, 808, 850, 891, 933 |
| MaeI | CTAG | 2 cut(s) | 345, 648 |
| MaeII | ACGT | 2 cut(s) | 303, 761 |
| MalI | GATC | 4 cut(s) | 136, 266, 311, 559 |
| MboI | GATC | 4 cut(s) | 134, 264, 309, 557 |
| MboII | GAAGA | 3 cut(s) | 541, 544, 726 |
| MfeI | CAATTG | 2 cut(s) | 543, 917 |
| MflI | RGATCY | 3 cut(s) | 134, 264, 557 |
| MhlI | GDGCHC | 2 cut(s) | 647, 825 |
| MluCI | AATT | 6 cut(s) | 5, 73, 323, 543, 672, 917 |
| MlyI | GAGTC | 1 cut(s) | 935 |
| MmeI | TCCRAC | 1 cut(s) | 361 |
| Mph1103I | ATGCAT | 3 cut(s) | 788, 865, 964 |
| MseI | TTAA | 4 cut(s) | 393, 725, 936, 979 |
| MslI | CAYNNNNRTG | 1 cut(s) | 701 |
| MspI | CCGG | 1 cut(s) | 886 |
| MspR9I | CCNGG | 1 cut(s) | 516 |
| MunI | CAATTG | 2 cut(s) | 543, 917 |
| Mva1269I | GAATGC | 1 cut(s) | 877 |
| MvaI | CCWGG | 1 cut(s) | 516 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 407, 617, 626, 774, 783, 829 |
| NdeII | GATC | 4 cut(s) | 134, 264, 309, 557 |
| NlaIII | CATG | 4 cut(s) | 100, 263, 272, 437 |
| NlaIV | GGNNCC | 2 cut(s) | 157, 266 |
| NsiI | ATGCAT | 3 cut(s) | 788, 865, 964 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 309 |
| PctI | GAATGC | 1 cut(s) | 877 |
| PfeI | GAWTC | 4 cut(s) | 118, 363, 511, 691 |
| PkrI | GCNGC | 5 cut(s) | 31, 487, 610, 666, 948 |
| PleI | GAGTC | 1 cut(s) | 934 |
| PpsI | GAGTC | 1 cut(s) | 934 |
| Psp1406I | AACGTT | 1 cut(s) | 303 |
| Psp6I | CCWGG | 1 cut(s) | 514 |
| PspGI | CCWGG | 1 cut(s) | 514 |
| PspN4I | GGNNCC | 2 cut(s) | 157, 266 |
| PspPI | GGNCC | 2 cut(s) | 141, 205 |
| PsuI | RGATCY | 3 cut(s) | 134, 264, 557 |
| RsaI | GTAC | 4 cut(s) | 596, 623, 808, 890 |
| RsaNI | GTAC | 4 cut(s) | 595, 622, 807, 889 |
| RseI | CAYNNNNRTG | 1 cut(s) | 701 |
| SaqAI | TTAA | 4 cut(s) | 393, 725, 936, 979 |
| SatI | GCNGC | 5 cut(s) | 30, 486, 609, 665, 947 |
| Sau3AI | GATC | 4 cut(s) | 134, 264, 309, 557 |
| Sau96I | GGNCC | 2 cut(s) | 141, 205 |
| SchI | GAGTC | 1 cut(s) | 935 |
| ScrFI | CCNGG | 1 cut(s) | 516 |
| SduI | GDGCHC | 2 cut(s) | 647, 825 |
| SfaNI | GCATC | 7 cut(s) | 740, 758, 773, 808, 850, 891, 933 |
| SfcI | CTRYAG | 1 cut(s) | 39 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 701 |
| SmlI | CTYRAG | 2 cut(s) | 524, 637 |
| SmoI | CTYRAG | 2 cut(s) | 524, 637 |
| SpeI | ACTAGT | 1 cut(s) | 647 |
| Sse9I | AATT | 6 cut(s) | 5, 73, 323, 543, 672, 917 |
| SsiI | CCGC | 1 cut(s) | 111 |
| SspMI | CTAG | 2 cut(s) | 345, 648 |
| StyD4I | CCNGG | 1 cut(s) | 514 |
| StyI | CCWWGG | 1 cut(s) | 895 |
| TaaI | ACNGT | 1 cut(s) | 601 |
| TaiI | ACGT | 2 cut(s) | 306, 764 |
| TaqI | TCGA | 3 cut(s) | 229, 246, 312 |
| TasI | AATT | 6 cut(s) | 5, 73, 323, 543, 672, 917 |
| TatI | WGTACW | 1 cut(s) | 594 |
| TfiI | GAWTC | 4 cut(s) | 118, 363, 511, 691 |
| Tru1I | TTAA | 4 cut(s) | 393, 725, 936, 979 |
| Tru9I | TTAA | 4 cut(s) | 393, 725, 936, 979 |
| TscAI | CASTG | 6 cut(s) | 157, 166, 604, 689, 834, 839 |
| TseI | GCWGC | 5 cut(s) | 29, 485, 608, 664, 946 |
| TspDTI | ATGAA | 4 cut(s) | 10, 37, 285, 829 |
| TspRI | CASTG | 6 cut(s) | 157, 166, 604, 689, 834, 839 |
| VneI | GTGCAC | 1 cut(s) | 643 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 275 |
| XspI | CTAG | 2 cut(s) | 345, 648 |
| Zsp2I | ATGCAT | 3 cut(s) | 788, 865, 964 |