Rh5BG417200

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000044
Physical Location & Seq
Reverse (-)
67672336 .. 67673721
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG417200.1

Sequence Viewer

Length: 1224 bp
ATGGCGGCAGACATCTCAAAAAATCAAAAGCCCTCCTACGCAGCAGCTCTGACTGAGGTGTCTCCAATCTCCTTTGCCATCGCTGACTTGCCTTCGCCTTTCTTTGAAGATGGTTTGAACTCTATTCGCATCTCCGAAGAACCATTCCTTCGCGGTCTCGAGAAATGCAAAACCAACTTAATTGGTCGTGTTAATTCTCCTGTCAAGACCCCAGACCTTGTACAACAATTGAAGCAACTATGGTCGGGACTAGATCACTGGACTGTGGCACCTCTTGGTAGGGGTTTTTTCATGCTCCAGTTCAAAAACTTAGTTGATATGCAGCTAGTCTGGTCGTCGGGGACAGTACGTCTTAACTCCGGCATGCTCCGTTTGATCAAATGGTCACCTGAGTTCTCGCCATCTACATACAGAAATTCCTTCGCTCAGCCTCTTCACGACAAGCTCAGAATCACCAGGGCCAATGGTGAGGTTGTGGTGATTGGAGTTGAGTATGAGTCCGTACCTGATATCTGCACCAGGTGTGGGATAGTTGGCCATGTCGCTGGTACTTGCCATTCTAAAGCTCCGGACCACACTGTGACTGATATCCCAAATGAGCGGGGAAGGTCAACAGAGCGTTCTGATCTGAGGAGAAGGAGGAACAATCGATCTCACAAGTCACAGCACAACTCAAAGTATGGGGGTGCAATAAGGAGATCAGTCAAAGCCAGACAACCTGATGATGTTGCACCACTGACGGCAACCACAGCAGCAATCTTAAGGCACGACGTTGAAGATATGATGGCTTCATCTGTTTTGAATAATGTTGAGATTTCCACAGCAGCTCCAACTATCACTGCAGTTCCAGCTTTCACAGCTACTCTAATTATGGATGAGCTGGCGATGGCTGCTGTGCCCGTGCAACAAGCTGATTCTAGTGATAGCGTCCCACCTGGATTTACTCGGATGGAAACGGAATCTGATCTCCAACCTGCTAGCTCTACGTCGACTCCCGTGGTTTCTTCAGTTGCTCCACCAATTATTATGGCCGACTGTAATCATAGTGACTGTCAGATGGGAGTTACAACTGACCTTTTGGAGGAAGGAGAATTCACACCCGTCCTACATAAGAAGTCGAAGAAATTGCTGAAGCAAAATGAGAAAGCAAAAATGAAAATAATCTCCCACAAACCTGTGGGACGAGCTCTACTTCGCAAGGGAGCTAGTCTCAAGCGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

407

Amino Acids

44.65

Weight (kDa)

9.15

Isoelectric Point (pI)

54.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 54 - 135 4e-10 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 141 - 186 3e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 58
Acc36I ACCTGC 1 cut(s) 982
AccB1I GGYRCC 1 cut(s) 268
AccBSI CCGCTC 1 cut(s) 601
AccI GTMKAC 1 cut(s) 989
AccII CGCG 1 cut(s) 153
AccIII TCCGGA 1 cut(s) 568
AciI CCGC 3 cut(s) 5, 153, 601
AcoI YGGCCR 2 cut(s) 535, 1029
AcsI RAATTY 2 cut(s) 415, 1091
AcuI CTGAAG 2 cut(s) 990, 1151
AdeI CACNNNGTG 2 cut(s) 522, 580
AfaI GTAC 4 cut(s) 222, 348, 504, 550
AfiI CCNNNNNNNGG 2 cut(s) 525, 1081
AflII CTTAAG 1 cut(s) 760
AgsI TTSAA 6 cut(s) 107, 118, 232, 304, 776, 802
AhdI GACNNNNNGTC 1 cut(s) 348
AjnI CCWGG 3 cut(s) 455, 518, 934
Alw21I GWGCWC 1 cut(s) 1189
Alw26I GTCTC 3 cut(s) 66, 161, 1214
Ama87I CYCGRG 1 cut(s) 158
Aor13HI TCCGGA 1 cut(s) 568
AoxI GGCC 3 cut(s) 459, 535, 1029
ApeKI GCWGC 6 cut(s) 41, 44, 322, 752, 824, 890
ApoI RAATTY 2 cut(s) 415, 1091
AspS9I GGNCC 2 cut(s) 459, 571
AsuHPI GGTGA 4 cut(s) 378, 445, 479, 490
AsuNHI GCTAGC 1 cut(s) 977
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 1 cut(s) 571
BaeGI GKGCMC 1 cut(s) 900
BalI TGGCCA 1 cut(s) 537
BanI GGYRCC 1 cut(s) 268
BanII GRGCYC 1 cut(s) 1189
Bbv12I GWGCWC 1 cut(s) 1189
BbvI GCAGC 6 cut(s) 53, 56, 334, 764, 836, 877
BccI CCATC 7 cut(s) 86, 104, 409, 778, 880, 943, 1051
BceAI ACGGC 1 cut(s) 756
BcgI CGANNNNNNTGC 2 cut(s) 1108, 1142
BciT130I CCWGG 3 cut(s) 457, 520, 936
BclI TGATCA 1 cut(s) 375
BcoDI GTCTC 3 cut(s) 66, 161, 1214
BfaI CTAG 5 cut(s) 251, 326, 918, 978, 1206
BfmI CTRYAG 1 cut(s) 840
BfrI CTTAAG 1 cut(s) 760
BfuAI ACCTGC 1 cut(s) 982
BisI GCNGC 7 cut(s) 6, 42, 45, 323, 753, 825, 891
BlpI GCTNAGC 1 cut(s) 426
BlsI GCNGC 7 cut(s) 7, 43, 46, 324, 754, 826, 892
Bme1390I CCNGG 3 cut(s) 457, 520, 936
Bme18I GGWCC 1 cut(s) 571
BmeRI GACNNNNNGTC 1 cut(s) 348
BmeT110I CYCGRG 1 cut(s) 158
BmgT120I GGNCC 2 cut(s) 459, 571
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 3 cut(s) 457, 520, 936
BmsI GCATC 1 cut(s) 138
BmtI GCTAGC 1 cut(s) 981
BplI GAGNNNNNCTC 1 cut(s) 1194
BpmI CTGGAG 1 cut(s) 281
Bpu1102I GCTNAGC 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 1196
Bsa29I ATCGAT 1 cut(s) 649
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 456, 996
BsaWI WCCGGW 1 cut(s) 568
BsaXI ACNNNNNCTCC 4 cut(s) 811, 841, 976, 1006
Bsc4I CCNNNNNNNGG 2 cut(s) 525, 1081
Bse1I ACTGG 2 cut(s) 263, 298
BseAI TCCGGA 1 cut(s) 568
BseBI CCWGG 3 cut(s) 457, 520, 936
BseCI ATCGAT 1 cut(s) 649
BseDI CCNNGG 2 cut(s) 456, 996
BseGI GGATG 2 cut(s) 880, 954
BseLI CCNNNNNNNGG 2 cut(s) 525, 1081
BseMII CTCAG 5 cut(s) 45, 381, 440, 460, 620
BseNI ACTGG 2 cut(s) 263, 298
BseRI GAGGAG 1 cut(s) 646
BseSI GKGCMC 1 cut(s) 900
BseXI GCAGC 6 cut(s) 53, 56, 334, 764, 836, 877
BsgI GTGCAG 1 cut(s) 499
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 3 cut(s) 461, 537, 1031
BshNI GGYRCC 1 cut(s) 268
BshVI ATCGAT 1 cut(s) 649
BsiHKAI GWGCWC 1 cut(s) 1189
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 2 cut(s) 360, 569
BslFI GGGAC 4 cut(s) 261, 355, 914, 1194
BslI CCNNNNNNNGG 2 cut(s) 525, 1081
BsmAI GTCTC 3 cut(s) 66, 161, 1214
BsmFI GGGAC 4 cut(s) 261, 355, 914, 1194
BsnI GGCC 3 cut(s) 461, 537, 1031
Bso31I GGTCTC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 158
Bsp1286I GDGCHC 2 cut(s) 900, 1189
Bsp13I TCCGGA 1 cut(s) 568
Bsp1407I TGTACA 1 cut(s) 220
Bsp143I GATC 6 cut(s) 253, 375, 625, 650, 698, 964
Bsp1720I GCTNAGC 1 cut(s) 426
BspACI CCGC 3 cut(s) 5, 153, 601
BspANI GGCC 3 cut(s) 461, 537, 1031
BspCNI CTCAG 5 cut(s) 46, 382, 439, 459, 621
BspDI ATCGAT 1 cut(s) 649
BspEI TCCGGA 1 cut(s) 568
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 270
BspMAI CTGCAG 1 cut(s) 844
BspMI ACCTGC 1 cut(s) 982
BspOI GCTAGC 1 cut(s) 981
BspT107I GGYRCC 1 cut(s) 268
BspTI CTTAAG 1 cut(s) 760
BspTNI GGTCTC 1 cut(s) 161
BsrBI CCGCTC 1 cut(s) 601
BsrGI TGTACA 1 cut(s) 220
BsrI ACTGG 2 cut(s) 263, 298
BssECI CCNNGG 2 cut(s) 456, 996
BssMI GATC 6 cut(s) 253, 375, 625, 650, 698, 964
Bst2UI CCWGG 3 cut(s) 457, 520, 936
Bst4CI ACNGT 5 cut(s) 265, 346, 580, 1037, 1052
Bst6I CTCTTC 1 cut(s) 438
BstAFI CTTAAG 1 cut(s) 760
BstAUI TGTACA 1 cut(s) 220
BstC8I GCNNGC 3 cut(s) 365, 882, 979
BstDEI CTNAG 6 cut(s) 54, 310, 390, 426, 446, 629
BstDSI CCRYGG 1 cut(s) 996
BstEII GGTNACC 1 cut(s) 384
BstENI CCTNNNNNAGG 1 cut(s) 1079
BstF5I GGATG 2 cut(s) 880, 954
BstFNI CGCG 1 cut(s) 153
BstKTI GATC 6 cut(s) 256, 378, 628, 653, 701, 967
BstMAI GTCTC 3 cut(s) 66, 161, 1214
BstMBI GATC 6 cut(s) 253, 375, 625, 650, 698, 964
BstMWI GCNNNNNNNGC 4 cut(s) 749, 848, 857, 890
BstNI CCWGG 3 cut(s) 457, 520, 936
BstNSI RCATGY 1 cut(s) 367
BstPI GGTNACC 1 cut(s) 384
BstSCI CCNGG 3 cut(s) 455, 518, 934
BstSFI CTRYAG 1 cut(s) 840
BstSLI GKGCMC 1 cut(s) 900
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 6 cut(s) 53, 56, 334, 764, 836, 877
BstXI CCANNNNNNTGG 1 cut(s) 545
Bsu15I ATCGAT 1 cut(s) 649
BsuRI GGCC 3 cut(s) 461, 537, 1031
BsuTUI ATCGAT 1 cut(s) 649
BtgI CCRYGG 1 cut(s) 996
BtgZI GCGATG 2 cut(s) 64, 899
BtsCI GGATG 2 cut(s) 880, 954
BtsI GCAGTG 1 cut(s) 837
BtsIMutI CAGTG 4 cut(s) 256, 576, 734, 837
BveI ACCTGC 1 cut(s) 982
Cac8I GCNNGC 3 cut(s) 365, 882, 979
Cfr13I GGNCC 2 cut(s) 459, 571
ClaI ATCGAT 1 cut(s) 649
CseI GACGC 1 cut(s) 916
CsiI ACCWGGT 1 cut(s) 518
Csp6I GTAC 4 cut(s) 221, 347, 503, 549
CviAII CATG 3 cut(s) 292, 364, 539
CviQI GTAC 4 cut(s) 221, 347, 503, 549
DdeI CTNAG 6 cut(s) 54, 310, 390, 426, 446, 629
DpnI GATC 6 cut(s) 255, 377, 627, 652, 700, 966
DpnII GATC 6 cut(s) 253, 375, 625, 650, 698, 964
DraIII CACNNNGTG 2 cut(s) 522, 580
DrdI GACNNNNNNGTC 1 cut(s) 58
DriI GACNNNNNGTC 1 cut(s) 348
DseDI GACNNNNNNGTC 1 cut(s) 58
EaeI YGGCCR 2 cut(s) 535, 1029
Eam1104I CTCTTC 1 cut(s) 438
Eam1105I GACNNNNNGTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 438
Ecl136II GAGCTC 1 cut(s) 1187
Eco24I GRGCYC 1 cut(s) 1189
Eco31I GGTCTC 1 cut(s) 161
Eco32I GATATC 2 cut(s) 511, 589
Eco47I GGWCC 1 cut(s) 571
Eco53kI GAGCTC 1 cut(s) 1187
Eco57I CTGAAG 2 cut(s) 990, 1151
Eco88I CYCGRG 1 cut(s) 158
Eco91I GGTNACC 1 cut(s) 384
EcoICRI GAGCTC 1 cut(s) 1187
EcoNI CCTNNNNNAGG 1 cut(s) 1079
EcoO65I GGTNACC 1 cut(s) 384
EcoRI GAATTC 1 cut(s) 1091
EcoRII CCWGG 3 cut(s) 455, 518, 934
EcoRV GATATC 2 cut(s) 511, 589
EcoT38I GRGCYC 1 cut(s) 1189
FaeI CATG 3 cut(s) 295, 367, 542
FaqI GGGAC 4 cut(s) 261, 355, 914, 1194
FatI CATG 3 cut(s) 291, 363, 538
FauI CCCGC 1 cut(s) 594
FbaI TGATCA 1 cut(s) 375
FblI GTMKAC 1 cut(s) 989
Fnu4HI GCNGC 7 cut(s) 6, 42, 45, 323, 753, 825, 891
FokI GGATG 2 cut(s) 887, 961
FriOI GRGCYC 1 cut(s) 1189
Fsp4HI GCNGC 7 cut(s) 6, 42, 45, 323, 753, 825, 891
FspBI CTAG 5 cut(s) 251, 326, 918, 978, 1206
GluI GCNGC 7 cut(s) 6, 42, 45, 323, 753, 825, 891
GsuI CTGGAG 1 cut(s) 281
HaeIII GGCC 3 cut(s) 461, 537, 1031
HapII CCGG 2 cut(s) 360, 569
HgaI GACGC 1 cut(s) 916
Hin1II CATG 3 cut(s) 295, 367, 542
HincII GTYRAC 2 cut(s) 612, 990
HindII GTYRAC 2 cut(s) 612, 990
HinfI GANTC 5 cut(s) 450, 497, 914, 959, 991
HpaII CCGG 2 cut(s) 360, 569
HphI GGTGA 4 cut(s) 378, 445, 479, 490
Hpy166II GTNNAC 2 cut(s) 612, 990
Hpy188I TCNGA 8 cut(s) 51, 136, 449, 625, 630, 948, 964, 1056
Hpy188III TCNNGA 6 cut(s) 158, 160, 205, 246, 437, 569
Hpy8I GTNNAC 2 cut(s) 612, 990
Hpy99I CGWCG 3 cut(s) 340, 773, 991
HpyAV CCTTC 6 cut(s) 102, 158, 430, 600, 630, 1079
HpyCH4III ACNGT 5 cut(s) 265, 346, 580, 1037, 1052
HpyCH4IV ACGT 3 cut(s) 349, 771, 986
HpyCH4V TGCA 7 cut(s) 168, 322, 516, 689, 731, 842, 904
HpyF10VI GCNNNNNNNGC 4 cut(s) 749, 848, 857, 890
HpyF3I CTNAG 6 cut(s) 54, 310, 390, 426, 446, 629
HpySE526I ACGT 3 cut(s) 349, 771, 986
Hsp92II CATG 3 cut(s) 295, 367, 542
Kpn2I TCCGGA 1 cut(s) 568
Ksp22I TGATCA 1 cut(s) 375
Kzo9I GATC 6 cut(s) 253, 375, 625, 650, 698, 964
LmnI GCTCC 6 cut(s) 300, 372, 571, 832, 1018, 1202
Lsp1109I GCAGC 6 cut(s) 53, 56, 334, 764, 836, 877
LweI GCATC 1 cut(s) 138
MabI ACCWGGT 1 cut(s) 518
MaeI CTAG 5 cut(s) 251, 326, 918, 978, 1206
MaeII ACGT 3 cut(s) 349, 771, 986
MaeIII GTNAC 5 cut(s) 384, 580, 660, 1046, 1063
MalI GATC 6 cut(s) 255, 377, 627, 652, 700, 966
MbiI CCGCTC 1 cut(s) 601
MboI GATC 6 cut(s) 253, 375, 625, 650, 698, 964
MboII GAAGA 6 cut(s) 119, 149, 425, 788, 996, 1132
MfeI CAATTG 1 cut(s) 227
MhlI GDGCHC 2 cut(s) 900, 1189
MlsI TGGCCA 1 cut(s) 537
MluCI AATT 8 cut(s) 180, 193, 227, 415, 867, 1020, 1091, 1124
MluNI TGGCCA 1 cut(s) 537
MlyI GAGTC 2 cut(s) 506, 985
MmeI TCCRAC 2 cut(s) 854, 994
MnlI CCTC 8 cut(s) 43, 49, 282, 441, 463, 624, 633, 1075
Mox20I TGGCCA 1 cut(s) 537
MroI TCCGGA 1 cut(s) 568
MscI TGGCCA 1 cut(s) 537
MseI TTAA 4 cut(s) 179, 192, 354, 761
Msp20I TGGCCA 1 cut(s) 537
MspCI CTTAAG 1 cut(s) 760
MspI CCGG 2 cut(s) 360, 569
MspR9I CCNGG 3 cut(s) 457, 520, 936
MunI CAATTG 1 cut(s) 227
MvaI CCWGG 3 cut(s) 457, 520, 936
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 4 cut(s) 749, 848, 857, 890
NdeII GATC 6 cut(s) 253, 375, 625, 650, 698, 964
NheI GCTAGC 1 cut(s) 977
NlaIII CATG 3 cut(s) 295, 367, 542
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 4 cut(s) 384, 580, 660, 1046
NspI RCATGY 1 cut(s) 367
PaeI GCATGC 1 cut(s) 367
PaeR7I CTCGAG 1 cut(s) 158
PfeI GAWTC 3 cut(s) 450, 914, 959
PkrI GCNGC 7 cut(s) 7, 43, 46, 324, 754, 826, 892
PleI GAGTC 2 cut(s) 505, 985
PpsI GAGTC 2 cut(s) 505, 985
Psp124BI GAGCTC 1 cut(s) 1189
Psp6I CCWGG 3 cut(s) 455, 518, 934
PspEI GGTNACC 1 cut(s) 384
PspGI CCWGG 3 cut(s) 455, 518, 934
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 2 cut(s) 459, 571
PstI CTGCAG 1 cut(s) 844
RsaI GTAC 4 cut(s) 222, 348, 504, 550
RsaNI GTAC 4 cut(s) 221, 347, 503, 549
SacI GAGCTC 1 cut(s) 1189
SalI GTCGAC 1 cut(s) 988
SaqAI TTAA 4 cut(s) 179, 192, 354, 761
SatI GCNGC 7 cut(s) 6, 42, 45, 323, 753, 825, 891
Sau3AI GATC 6 cut(s) 253, 375, 625, 650, 698, 964
Sau96I GGNCC 2 cut(s) 459, 571
SchI GAGTC 2 cut(s) 506, 985
ScrFI CCNGG 3 cut(s) 457, 520, 936
SduI GDGCHC 2 cut(s) 900, 1189
SexAI ACCWGGT 1 cut(s) 518
SfaNI GCATC 1 cut(s) 138
SfcI CTRYAG 1 cut(s) 840
Sfr274I CTCGAG 1 cut(s) 158
SinI GGWCC 1 cut(s) 571
SlaI CTCGAG 1 cut(s) 158
SmlI CTYRAG 3 cut(s) 158, 760, 1211
SmoI CTYRAG 3 cut(s) 158, 760, 1211
SphI GCATGC 1 cut(s) 367
Sse9I AATT 8 cut(s) 180, 193, 227, 415, 867, 1020, 1091, 1124
SsiI CCGC 3 cut(s) 5, 153, 601
SspMI CTAG 5 cut(s) 251, 326, 918, 978, 1206
SstI GAGCTC 1 cut(s) 1189
StyD4I CCNGG 3 cut(s) 455, 518, 934
TaaI ACNGT 5 cut(s) 265, 346, 580, 1037, 1052
TaiI ACGT 3 cut(s) 352, 774, 989
TaqI TCGA 4 cut(s) 159, 649, 989, 1118
TasI AATT 8 cut(s) 180, 193, 227, 415, 867, 1020, 1091, 1124
TatI WGTACW 1 cut(s) 220
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 450, 914, 959
Tru1I TTAA 4 cut(s) 179, 192, 354, 761
Tru9I TTAA 4 cut(s) 179, 192, 354, 761
TscAI CASTG 4 cut(s) 263, 583, 741, 844
TseFI GTSAC 4 cut(s) 384, 580, 660, 1046
TseI GCWGC 6 cut(s) 41, 44, 322, 752, 824, 890
Tsp45I GTSAC 4 cut(s) 384, 580, 660, 1046
TspDTI ATGAA 3 cut(s) 280, 780, 1169
TspGWI ACGGA 3 cut(s) 359, 490, 971
TspRI CASTG 4 cut(s) 263, 583, 741, 844
Vha464I CTTAAG 1 cut(s) 760
VpaK11BI GGWCC 1 cut(s) 571
XagI CCTNNNNNAGG 1 cut(s) 1079
XapI RAATTY 2 cut(s) 415, 1091
XceI RCATGY 1 cut(s) 367
XhoI CTCGAG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 989
XspI CTAG 5 cut(s) 251, 326, 918, 978, 1206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.