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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 418 |
| AccBSI | CCGCTC | 1 cut(s) | 40 |
| AccI | GTMKAC | 2 cut(s) | 12, 425 |
| AciI | CCGC | 2 cut(s) | 40, 368 |
| AcoI | YGGCCR | 1 cut(s) | 173 |
| AcsI | RAATTY | 1 cut(s) | 395 |
| AcuI | CTGAAG | 3 cut(s) | 89, 426, 587 |
| AdeI | CACNNNGTG | 1 cut(s) | 208 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 517, 634 |
| AflII | CTTAAG | 1 cut(s) | 196 |
| AgsI | TTSAA | 2 cut(s) | 238, 354 |
| AjiI | CACGTC | 2 cut(s) | 208, 620 |
| AjnI | CCWGG | 1 cut(s) | 370 |
| AluBI | AGCT | 4 cut(s) | 263, 287, 417, 641 |
| AluI | AGCT | 4 cut(s) | 263, 287, 417, 641 |
| Alw21I | GWGCWC | 1 cut(s) | 625 |
| Alw26I | GTCTC | 2 cut(s) | 130, 650 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 23 |
| AoxI | GGCC | 1 cut(s) | 173 |
| ApeKI | GCWGC | 2 cut(s) | 23, 260 |
| ApoI | RAATTY | 1 cut(s) | 395 |
| AsuHPI | GGTGA | 3 cut(s) | 219, 331, 536 |
| AsuNHI | GCTAGC | 1 cut(s) | 413 |
| Bbv12I | GWGCWC | 1 cut(s) | 625 |
| BbvI | GCAGC | 2 cut(s) | 10, 272 |
| BccI | CCATC | 4 cut(s) | 214, 274, 379, 487 |
| BceAI | ACGGC | 1 cut(s) | 188 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 544, 578 |
| BciT130I | CCWGG | 1 cut(s) | 372 |
| BcoDI | GTCTC | 2 cut(s) | 130, 650 |
| BfaI | CTAG | 2 cut(s) | 414, 642 |
| BfrI | CTTAAG | 1 cut(s) | 196 |
| BfuAI | ACCTGC | 1 cut(s) | 418 |
| BisI | GCNGC | 2 cut(s) | 24, 261 |
| BlsI | GCNGC | 2 cut(s) | 25, 262 |
| Bme1390I | CCNGG | 1 cut(s) | 372 |
| BmgBI | CACGTC | 2 cut(s) | 208, 620 |
| BmrFI | CCNGG | 1 cut(s) | 372 |
| BmrI | ACTGGG | 1 cut(s) | 11 |
| BmsI | GCATC | 3 cut(s) | 14, 115, 312 |
| BmtI | GCTAGC | 1 cut(s) | 417 |
| BmuI | ACTGGG | 1 cut(s) | 11 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 630 |
| BpmI | CTGGAG | 2 cut(s) | 285, 519 |
| BpuEI | CTTGAG | 1 cut(s) | 632 |
| BsaI | GGTCTC | 1 cut(s) | 130 |
| BsaJI | CCNNGG | 2 cut(s) | 170, 432 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 283, 313, 412, 442, 609, 639 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 517, 634 |
| Bse118I | RCCGGY | 3 cut(s) | 175, 316, 334 |
| Bse1I | ACTGG | 4 cut(s) | 17, 140, 302, 536 |
| BseBI | CCWGG | 1 cut(s) | 372 |
| BseDI | CCNNGG | 2 cut(s) | 170, 432 |
| BseGI | GGATG | 4 cut(s) | 130, 217, 316, 390 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 517, 634 |
| BseNI | ACTGG | 4 cut(s) | 17, 140, 302, 536 |
| BseX3I | CGGCCG | 1 cut(s) | 173 |
| BseXI | GCAGC | 2 cut(s) | 10, 272 |
| BseYI | CCCAGC | 1 cut(s) | 256 |
| Bsh1285I | CGRYCG | 2 cut(s) | 12, 176 |
| BshFI | GGCC | 1 cut(s) | 175 |
| BsiEI | CGRYCG | 2 cut(s) | 12, 176 |
| BsiHKAI | GWGCWC | 1 cut(s) | 625 |
| BsiSI | CCGG | 3 cut(s) | 176, 317, 335 |
| BslFI | GGGAC | 2 cut(s) | 350, 630 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 517, 634 |
| BsmAI | GTCTC | 2 cut(s) | 130, 650 |
| BsmFI | GGGAC | 2 cut(s) | 350, 630 |
| BsnI | GGCC | 1 cut(s) | 175 |
| Bso31I | GGTCTC | 1 cut(s) | 130 |
| Bsp1286I | GDGCHC | 1 cut(s) | 625 |
| Bsp143I | GATC | 1 cut(s) | 400 |
| BspACI | CCGC | 2 cut(s) | 40, 368 |
| BspANI | GGCC | 1 cut(s) | 175 |
| BspMI | ACCTGC | 1 cut(s) | 418 |
| BspOI | GCTAGC | 1 cut(s) | 417 |
| BspTI | CTTAAG | 1 cut(s) | 196 |
| BspTNI | GGTCTC | 1 cut(s) | 130 |
| BsrBI | CCGCTC | 1 cut(s) | 40 |
| BsrFI | RCCGGY | 3 cut(s) | 175, 316, 334 |
| BsrI | ACTGG | 4 cut(s) | 17, 140, 302, 536 |
| BssAI | RCCGGY | 3 cut(s) | 175, 316, 334 |
| BssECI | CCNNGG | 2 cut(s) | 170, 432 |
| BssMI | GATC | 1 cut(s) | 400 |
| Bst2UI | CCWGG | 1 cut(s) | 372 |
| Bst6I | CTCTTC | 1 cut(s) | 65 |
| BstAFI | CTTAAG | 1 cut(s) | 196 |
| BstC8I | GCNNGC | 3 cut(s) | 177, 327, 415 |
| BstDSI | CCRYGG | 2 cut(s) | 170, 432 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 515, 632 |
| BstF5I | GGATG | 4 cut(s) | 130, 217, 316, 390 |
| BstKTI | GATC | 1 cut(s) | 403 |
| BstMAI | GTCTC | 2 cut(s) | 130, 650 |
| BstMBI | GATC | 1 cut(s) | 400 |
| BstMCI | CGRYCG | 2 cut(s) | 12, 176 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 284, 293, 322, 331 |
| BstNI | CCWGG | 1 cut(s) | 372 |
| BstSCI | CCNGG | 1 cut(s) | 370 |
| BstV1I | GCAGC | 2 cut(s) | 10, 272 |
| BstZI | CGGCCG | 1 cut(s) | 173 |
| BsuRI | GGCC | 1 cut(s) | 175 |
| BtgI | CCRYGG | 2 cut(s) | 170, 432 |
| BtrI | CACGTC | 2 cut(s) | 208, 620 |
| BtsCI | GGATG | 4 cut(s) | 130, 217, 316, 390 |
| BtsI | GCAGTG | 2 cut(s) | 273, 291 |
| BtsIMutI | CAGTG | 3 cut(s) | 24, 273, 291 |
| BveI | ACCTGC | 1 cut(s) | 418 |
| Cac8I | GCNNGC | 3 cut(s) | 177, 327, 415 |
| CaiI | CAGNNNCTG | 1 cut(s) | 23 |
| Cfr10I | RCCGGY | 3 cut(s) | 175, 316, 334 |
| CseI | GACGC | 1 cut(s) | 352 |
| CviAII | CATG | 1 cut(s) | 119 |
| CviJI | RGCY | 9 cut(s) | 23, 149, 175, 224, 263, 287, 316, 417, 641 |
| CviKI_1 | RGCY | 9 cut(s) | 23, 149, 175, 224, 263, 287, 316, 417, 641 |
| DpnI | GATC | 1 cut(s) | 402 |
| DpnII | GATC | 1 cut(s) | 400 |
| DraIII | CACNNNGTG | 1 cut(s) | 208 |
| EaeI | YGGCCR | 1 cut(s) | 173 |
| EagI | CGGCCG | 1 cut(s) | 173 |
| Eam1104I | CTCTTC | 1 cut(s) | 65 |
| EarI | CTCTTC | 1 cut(s) | 65 |
| EclXI | CGGCCG | 1 cut(s) | 173 |
| Eco31I | GGTCTC | 1 cut(s) | 130 |
| Eco52I | CGGCCG | 1 cut(s) | 173 |
| Eco57I | CTGAAG | 3 cut(s) | 89, 426, 587 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 515, 632 |
| EcoRII | CCWGG | 1 cut(s) | 370 |
| FaeI | CATG | 1 cut(s) | 122 |
| FaiI | YATR | 3 cut(s) | 120, 464, 606 |
| FaqI | GGGAC | 2 cut(s) | 350, 630 |
| FatI | CATG | 1 cut(s) | 118 |
| FauI | CCCGC | 2 cut(s) | 33, 375 |
| FblI | GTMKAC | 2 cut(s) | 12, 425 |
| Fnu4HI | GCNGC | 2 cut(s) | 24, 261 |
| FokI | GGATG | 4 cut(s) | 137, 224, 323, 397 |
| Fsp4HI | GCNGC | 2 cut(s) | 24, 261 |
| FspBI | CTAG | 2 cut(s) | 414, 642 |
| GluI | GCNGC | 2 cut(s) | 24, 261 |
| GsaI | CCCAGC | 1 cut(s) | 260 |
| GsuI | CTGGAG | 2 cut(s) | 285, 519 |
| HaeIII | GGCC | 1 cut(s) | 175 |
| HapII | CCGG | 3 cut(s) | 176, 317, 335 |
| HgaI | GACGC | 1 cut(s) | 352 |
| Hin1II | CATG | 1 cut(s) | 122 |
| HincII | GTYRAC | 3 cut(s) | 13, 51, 426 |
| HindII | GTYRAC | 3 cut(s) | 13, 51, 426 |
| HinfI | GANTC | 2 cut(s) | 350, 427 |
| HpaII | CCGG | 3 cut(s) | 176, 317, 335 |
| HphI | GGTGA | 3 cut(s) | 219, 331, 536 |
| Hpy166II | GTNNAC | 3 cut(s) | 13, 51, 426 |
| Hpy188I | TCNGA | 5 cut(s) | 64, 146, 349, 384, 659 |
| Hpy188III | TCNNGA | 1 cut(s) | 247 |
| Hpy8I | GTNNAC | 3 cut(s) | 13, 51, 426 |
| Hpy99I | CGWCG | 2 cut(s) | 209, 427 |
| HpyAV | CCTTC | 4 cut(s) | 39, 69, 515, 638 |
| HpyCH4IV | ACGT | 3 cut(s) | 207, 422, 619 |
| HpyCH4V | TGCA | 4 cut(s) | 128, 191, 278, 340 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 284, 293, 322, 331 |
| HpySE526I | ACGT | 3 cut(s) | 207, 422, 619 |
| Hsp92II | CATG | 1 cut(s) | 122 |
| KroI | GCCGGC | 1 cut(s) | 175 |
| KroNI | GCCGGC | 1 cut(s) | 177 |
| Kzo9I | GATC | 1 cut(s) | 400 |
| LmnI | GCTCC | 3 cut(s) | 268, 454, 638 |
| Lsp1109I | GCAGC | 2 cut(s) | 10, 272 |
| LweI | GCATC | 3 cut(s) | 14, 115, 312 |
| MaeI | CTAG | 2 cut(s) | 414, 642 |
| MaeII | ACGT | 3 cut(s) | 207, 422, 619 |
| MaeIII | GTNAC | 2 cut(s) | 99, 482 |
| MalI | GATC | 1 cut(s) | 402 |
| MbiI | CCGCTC | 1 cut(s) | 40 |
| MboI | GATC | 1 cut(s) | 400 |
| MboII | GAAGA | 3 cut(s) | 82, 432, 568 |
| MhlI | GDGCHC | 1 cut(s) | 625 |
| MluCI | AATT | 5 cut(s) | 129, 279, 395, 456, 560 |
| MlyI | GAGTC | 1 cut(s) | 421 |
| MmeI | TCCRAC | 1 cut(s) | 430 |
| MnlI | CCTC | 2 cut(s) | 72, 511 |
| MroNI | GCCGGC | 1 cut(s) | 175 |
| MseI | TTAA | 1 cut(s) | 197 |
| MslI | CAYNNNNRTG | 1 cut(s) | 123 |
| MspCI | CTTAAG | 1 cut(s) | 196 |
| MspI | CCGG | 3 cut(s) | 176, 317, 335 |
| MspR9I | CCNGG | 1 cut(s) | 372 |
| MvaI | CCWGG | 1 cut(s) | 372 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 284, 293, 322, 331 |
| NaeI | GCCGGC | 1 cut(s) | 177 |
| NdeII | GATC | 1 cut(s) | 400 |
| NgoMIV | GCCGGC | 1 cut(s) | 175 |
| NheI | GCTAGC | 1 cut(s) | 413 |
| NlaIII | CATG | 1 cut(s) | 122 |
| NmuCI | GTSAC | 2 cut(s) | 99, 482 |
| PdiI | GCCGGC | 1 cut(s) | 177 |
| PfeI | GAWTC | 1 cut(s) | 350 |
| PkrI | GCNGC | 2 cut(s) | 25, 262 |
| PleI | GAGTC | 1 cut(s) | 421 |
| PpsI | GAGTC | 1 cut(s) | 421 |
| Psp6I | CCWGG | 1 cut(s) | 370 |
| PspFI | CCCAGC | 1 cut(s) | 256 |
| PspGI | CCWGG | 1 cut(s) | 370 |
| PstNI | CAGNNNCTG | 1 cut(s) | 23 |
| RseI | CAYNNNNRTG | 1 cut(s) | 123 |
| SalI | GTCGAC | 2 cut(s) | 11, 424 |
| SaqAI | TTAA | 1 cut(s) | 197 |
| SatI | GCNGC | 2 cut(s) | 24, 261 |
| Sau3AI | GATC | 1 cut(s) | 400 |
| SchI | GAGTC | 1 cut(s) | 421 |
| ScrFI | CCNGG | 1 cut(s) | 372 |
| SduI | GDGCHC | 1 cut(s) | 625 |
| SfaNI | GCATC | 3 cut(s) | 14, 115, 312 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 123 |
| SmlI | CTYRAG | 2 cut(s) | 196, 647 |
| SmoI | CTYRAG | 2 cut(s) | 196, 647 |
| Sse9I | AATT | 5 cut(s) | 129, 279, 395, 456, 560 |
| SsiI | CCGC | 2 cut(s) | 40, 368 |
| SspMI | CTAG | 2 cut(s) | 414, 642 |
| StyD4I | CCNGG | 1 cut(s) | 370 |
| TaiI | ACGT | 3 cut(s) | 210, 425, 622 |
| TaqI | TCGA | 5 cut(s) | 12, 88, 246, 425, 554 |
| TasI | AATT | 5 cut(s) | 129, 279, 395, 456, 560 |
| TfiI | GAWTC | 1 cut(s) | 350 |
| Tru1I | TTAA | 1 cut(s) | 197 |
| Tru9I | TTAA | 1 cut(s) | 197 |
| TscAI | CASTG | 3 cut(s) | 24, 280, 298 |
| TseFI | GTSAC | 2 cut(s) | 99, 482 |
| TseI | GCWGC | 2 cut(s) | 23, 260 |
| Tsp45I | GTSAC | 2 cut(s) | 99, 482 |
| TspDTI | ATGAA | 1 cut(s) | 605 |
| TspGWI | ACGGA | 1 cut(s) | 407 |
| TspRI | CASTG | 3 cut(s) | 24, 280, 298 |
| Vha464I | CTTAAG | 1 cut(s) | 196 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 515, 632 |
| XapI | RAATTY | 1 cut(s) | 395 |
| XmiI | GTMKAC | 2 cut(s) | 12, 425 |
| XspI | CTAG | 2 cut(s) | 414, 642 |