Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 196, 231 |
| AciI | CCGC | 1 cut(s) | 164 |
| AclWI | GGATC | 2 cut(s) | 183, 267 |
| AfaI | GTAC | 2 cut(s) | 303, 435 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 34, 170, 173, 392, 407 |
| AgsI | TTSAA | 2 cut(s) | 44, 551 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 364, 396 |
| Alw26I | GTCTC | 3 cut(s) | 332, 470, 488 |
| AlwI | GGATC | 2 cut(s) | 183, 267 |
| AoxI | GGCC | 1 cut(s) | 456 |
| ApeKI | GCWGC | 1 cut(s) | 359 |
| AseI | ATTAAT | 2 cut(s) | 156, 273 |
| AspS9I | GGNCC | 2 cut(s) | 395, 457 |
| AsuC2I | CCSGG | 1 cut(s) | 168 |
| AsuHPI | GGTGA | 2 cut(s) | 32, 375 |
| AvaII | GGWCC | 1 cut(s) | 395 |
| BbvI | GCAGC | 1 cut(s) | 346 |
| BccI | CCATC | 1 cut(s) | 292 |
| BcnI | CCSGG | 1 cut(s) | 168 |
| BcoDI | GTCTC | 3 cut(s) | 332, 470, 488 |
| BfaI | CTAG | 3 cut(s) | 29, 392, 513 |
| BisI | GCNGC | 2 cut(s) | 164, 360 |
| BlsI | GCNGC | 2 cut(s) | 165, 361 |
| Bme1390I | CCNGG | 1 cut(s) | 168 |
| Bme18I | GGWCC | 1 cut(s) | 395 |
| BmgT120I | GGNCC | 2 cut(s) | 395, 457 |
| BmiI | GGNNCC | 1 cut(s) | 333 |
| BmrFI | CCNGG | 1 cut(s) | 168 |
| BmsI | GCATC | 2 cut(s) | 287, 547 |
| BoxI | GACNNNNGTC | 1 cut(s) | 400 |
| BpuEI | CTTGAG | 2 cut(s) | 111, 210 |
| BpuMI | CCSGG | 1 cut(s) | 168 |
| BsaI | GGTCTC | 1 cut(s) | 488 |
| BsaJI | CCNNGG | 1 cut(s) | 167 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 525, 555 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 34, 170, 173, 392, 407 |
| Bse1I | ACTGG | 1 cut(s) | 252 |
| BseDI | CCNNGG | 1 cut(s) | 167 |
| BseGI | GGATG | 2 cut(s) | 303, 562 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 34, 170, 173, 392, 407 |
| BseMII | CTCAG | 1 cut(s) | 465 |
| BseNI | ACTGG | 1 cut(s) | 252 |
| BseXI | GCAGC | 1 cut(s) | 346 |
| BsgI | GTGCAG | 1 cut(s) | 345 |
| BshFI | GGCC | 1 cut(s) | 458 |
| BsiSI | CCGG | 1 cut(s) | 167 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 34, 170, 173, 392, 407 |
| BsmAI | GTCTC | 3 cut(s) | 332, 470, 488 |
| BsmI | GAATGC | 1 cut(s) | 379 |
| BsnI | GGCC | 1 cut(s) | 458 |
| Bso31I | GGTCTC | 1 cut(s) | 488 |
| Bsp143I | GATC | 2 cut(s) | 188, 259 |
| BspACI | CCGC | 1 cut(s) | 164 |
| BspANI | GGCC | 1 cut(s) | 458 |
| BspCNI | CTCAG | 1 cut(s) | 466 |
| BspLI | GGNNCC | 1 cut(s) | 333 |
| BspPI | GGATC | 2 cut(s) | 183, 267 |
| BspTNI | GGTCTC | 1 cut(s) | 488 |
| BsrI | ACTGG | 1 cut(s) | 252 |
| BssECI | CCNNGG | 1 cut(s) | 167 |
| BssMI | GATC | 2 cut(s) | 188, 259 |
| Bst6I | CTCTTC | 1 cut(s) | 546 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 425 |
| BstDEI | CTNAG | 2 cut(s) | 240, 474 |
| BstF5I | GGATG | 2 cut(s) | 303, 562 |
| BstKTI | GATC | 2 cut(s) | 191, 262 |
| BstMAI | GTCTC | 3 cut(s) | 332, 470, 488 |
| BstMBI | GATC | 2 cut(s) | 188, 259 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 425 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 400 |
| BstSCI | CCNGG | 1 cut(s) | 166 |
| BstV1I | GCAGC | 1 cut(s) | 346 |
| BsuRI | GGCC | 1 cut(s) | 458 |
| BtsCI | GGATG | 2 cut(s) | 303, 562 |
| Cfr13I | GGNCC | 2 cut(s) | 395, 457 |
| Csp6I | GTAC | 2 cut(s) | 302, 434 |
| CviAII | CATG | 3 cut(s) | 66, 92, 313 |
| CviJI | RGCY | 4 cut(s) | 115, 359, 458, 472 |
| CviKI_1 | RGCY | 4 cut(s) | 115, 359, 458, 472 |
| CviQI | GTAC | 2 cut(s) | 302, 434 |
| DdeI | CTNAG | 2 cut(s) | 240, 474 |
| DpnI | GATC | 2 cut(s) | 190, 261 |
| DpnII | GATC | 2 cut(s) | 188, 259 |
| Eam1104I | CTCTTC | 1 cut(s) | 546 |
| EarI | CTCTTC | 1 cut(s) | 546 |
| Eco31I | GGTCTC | 1 cut(s) | 488 |
| Eco47I | GGWCC | 1 cut(s) | 395 |
| EcoO109I | RGGNCCY | 2 cut(s) | 395, 457 |
| EcoT22I | ATGCAT | 1 cut(s) | 280 |
| FaeI | CATG | 3 cut(s) | 69, 95, 316 |
| FaiI | YATR | 6 cut(s) | 48, 67, 78, 93, 306, 314 |
| FatI | CATG | 3 cut(s) | 65, 91, 312 |
| FblI | GTMKAC | 2 cut(s) | 196, 231 |
| Fnu4HI | GCNGC | 2 cut(s) | 164, 360 |
| FokI | GGATG | 2 cut(s) | 310, 569 |
| Fsp4HI | GCNGC | 2 cut(s) | 164, 360 |
| FspBI | CTAG | 3 cut(s) | 29, 392, 513 |
| GluI | GCNGC | 2 cut(s) | 164, 360 |
| HaeIII | GGCC | 1 cut(s) | 458 |
| HapII | CCGG | 1 cut(s) | 167 |
| Hin1II | CATG | 3 cut(s) | 69, 95, 316 |
| HincII | GTYRAC | 1 cut(s) | 197 |
| HindII | GTYRAC | 1 cut(s) | 197 |
| HpaII | CCGG | 1 cut(s) | 167 |
| HphI | GGTGA | 2 cut(s) | 32, 375 |
| Hpy166II | GTNNAC | 3 cut(s) | 179, 197, 232 |
| Hpy188III | TCNNGA | 1 cut(s) | 335 |
| Hpy8I | GTNNAC | 3 cut(s) | 179, 197, 232 |
| Hpy99I | CGWCG | 1 cut(s) | 198 |
| HpyAV | CCTTC | 4 cut(s) | 132, 136, 375, 585 |
| HpyCH4IV | ACGT | 3 cut(s) | 10, 234, 529 |
| HpyCH4V | TGCA | 7 cut(s) | 206, 278, 362, 379, 428, 464, 526 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 425 |
| HpyF3I | CTNAG | 2 cut(s) | 240, 474 |
| HpySE526I | ACGT | 3 cut(s) | 10, 234, 529 |
| Hsp92II | CATG | 3 cut(s) | 69, 95, 316 |
| Kzo9I | GATC | 2 cut(s) | 188, 259 |
| LmnI | GCTCC | 1 cut(s) | 533 |
| LpnPI | CCDG | 7 cut(s) | 180, 233, 270, 314, 348, 440, 486 |
| Lsp1109I | GCAGC | 1 cut(s) | 346 |
| LweI | GCATC | 2 cut(s) | 287, 547 |
| MaeI | CTAG | 3 cut(s) | 29, 392, 513 |
| MaeII | ACGT | 3 cut(s) | 10, 234, 529 |
| MalI | GATC | 2 cut(s) | 190, 261 |
| MboI | GATC | 2 cut(s) | 188, 259 |
| MboII | GAAGA | 1 cut(s) | 563 |
| MfeI | CAATTG | 1 cut(s) | 429 |
| MluCI | AATT | 4 cut(s) | 109, 157, 387, 429 |
| MnlI | CCTC | 7 cut(s) | 7, 247, 261, 313, 408, 481, 547 |
| Mph1103I | ATGCAT | 1 cut(s) | 280 |
| MseI | TTAA | 3 cut(s) | 156, 273, 444 |
| MspI | CCGG | 1 cut(s) | 167 |
| MspR9I | CCNGG | 1 cut(s) | 168 |
| MunI | CAATTG | 1 cut(s) | 429 |
| Mva1269I | GAATGC | 1 cut(s) | 379 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 425 |
| NciI | CCSGG | 1 cut(s) | 168 |
| NdeII | GATC | 2 cut(s) | 188, 259 |
| NlaIII | CATG | 3 cut(s) | 69, 95, 316 |
| NlaIV | GGNNCC | 1 cut(s) | 333 |
| NsiI | ATGCAT | 1 cut(s) | 280 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 193 |
| PctI | GAATGC | 1 cut(s) | 379 |
| PkrI | GCNGC | 2 cut(s) | 165, 361 |
| PpuMI | RGGWCCY | 1 cut(s) | 395 |
| PshAI | GACNNNNGTC | 1 cut(s) | 400 |
| PshBI | ATTAAT | 2 cut(s) | 156, 273 |
| Psp5II | RGGWCCY | 1 cut(s) | 395 |
| PspN4I | GGNNCC | 1 cut(s) | 333 |
| PspPI | GGNCC | 2 cut(s) | 395, 457 |
| PspPPI | RGGWCCY | 1 cut(s) | 395 |
| RsaI | GTAC | 2 cut(s) | 303, 435 |
| RsaNI | GTAC | 2 cut(s) | 302, 434 |
| SalI | GTCGAC | 1 cut(s) | 195 |
| SaqAI | TTAA | 3 cut(s) | 156, 273, 444 |
| SatI | GCNGC | 2 cut(s) | 164, 360 |
| Sau3AI | GATC | 2 cut(s) | 188, 259 |
| Sau96I | GGNCC | 2 cut(s) | 395, 457 |
| ScrFI | CCNGG | 1 cut(s) | 168 |
| SetI | ASST | 9 cut(s) | 13, 237, 258, 324, 333, 367, 400, 439, 532 |
| SfaNI | GCATC | 2 cut(s) | 287, 547 |
| SinI | GGWCC | 1 cut(s) | 395 |
| SmlI | CTYRAG | 2 cut(s) | 126, 225 |
| SmoI | CTYRAG | 2 cut(s) | 126, 225 |
| Sse9I | AATT | 4 cut(s) | 109, 157, 387, 429 |
| SsiI | CCGC | 1 cut(s) | 164 |
| SspMI | CTAG | 3 cut(s) | 29, 392, 513 |
| StyD4I | CCNGG | 1 cut(s) | 166 |
| TaiI | ACGT | 3 cut(s) | 13, 237, 532 |
| TaqI | TCGA | 2 cut(s) | 187, 196 |
| TasI | AATT | 4 cut(s) | 109, 157, 387, 429 |
| TauI | GCSGC | 1 cut(s) | 166 |
| Tru1I | TTAA | 3 cut(s) | 156, 273, 444 |
| Tru9I | TTAA | 3 cut(s) | 156, 273, 444 |
| TseI | GCWGC | 1 cut(s) | 359 |
| TspDTI | ATGAA | 1 cut(s) | 63 |
| TspGWI | ACGGA | 2 cut(s) | 310, 390 |
| VpaK11BI | GGWCC | 1 cut(s) | 395 |
| VspI | ATTAAT | 2 cut(s) | 156, 273 |
| XmiI | GTMKAC | 2 cut(s) | 196, 231 |
| XspI | CTAG | 3 cut(s) | 29, 392, 513 |
| Zsp2I | ATGCAT | 1 cut(s) | 280 |