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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 442 |
| AatII | GACGTC | 1 cut(s) | 155 |
| AccB1I | GGYRCC | 1 cut(s) | 218 |
| AccII | CGCG | 1 cut(s) | 408 |
| AciI | CCGC | 1 cut(s) | 281 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 201 |
| AcyI | GRCGYC | 1 cut(s) | 152 |
| AfaI | GTAC | 1 cut(s) | 45 |
| AflIII | ACRYGT | 1 cut(s) | 313 |
| AgsI | TTSAA | 3 cut(s) | 71, 206, 275 |
| AhlI | ACTAGT | 1 cut(s) | 356 |
| AluBI | AGCT | 3 cut(s) | 74, 328, 387 |
| AluI | AGCT | 3 cut(s) | 74, 328, 387 |
| AoxI | GGCC | 2 cut(s) | 3, 249 |
| ApoI | RAATTY | 1 cut(s) | 201 |
| AspLEI | GCGC | 4 cut(s) | 127, 262, 408, 410 |
| AspS9I | GGNCC | 1 cut(s) | 250 |
| AsuHPI | GGTGA | 1 cut(s) | 92 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanI | GGYRCC | 1 cut(s) | 218 |
| BbvCI | CCTCAGC | 1 cut(s) | 399 |
| BccI | CCATC | 2 cut(s) | 17, 58 |
| BclI | TGATCA | 1 cut(s) | 97 |
| BcuI | ACTAGT | 1 cut(s) | 356 |
| BfaI | CTAG | 2 cut(s) | 357, 384 |
| BfoI | RGCGCY | 1 cut(s) | 128 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 257 |
| BmcAI | AGTACT | 1 cut(s) | 45 |
| BmgT120I | GGNCC | 1 cut(s) | 250 |
| BmiI | GGNNCC | 2 cut(s) | 147, 220 |
| BmsI | GCATC | 1 cut(s) | 289 |
| Bpu10I | CCTNAGC | 1 cut(s) | 399 |
| BsaHI | GRCGYC | 1 cut(s) | 152 |
| Bse1I | ACTGG | 2 cut(s) | 41, 261 |
| Bse3DI | GCAATG | 1 cut(s) | 303 |
| BseGI | GGATG | 3 cut(s) | 304, 328, 382 |
| BseMI | GCAATG | 1 cut(s) | 303 |
| BseMII | CTCAG | 1 cut(s) | 390 |
| BseNI | ACTGG | 2 cut(s) | 41, 261 |
| BsePI | GCGCGC | 1 cut(s) | 406 |
| BseRI | GAGGAG | 3 cut(s) | 305, 380, 416 |
| BsgI | GTGCAG | 1 cut(s) | 264 |
| Bsh1236I | CGCG | 1 cut(s) | 408 |
| BshFI | GGCC | 2 cut(s) | 5, 251 |
| BshNI | GGYRCC | 1 cut(s) | 218 |
| BsnI | GGCC | 2 cut(s) | 5, 251 |
| Bsp143I | GATC | 1 cut(s) | 97 |
| BspACI | CCGC | 1 cut(s) | 281 |
| BspANI | GGCC | 2 cut(s) | 5, 251 |
| BspCNI | CTCAG | 1 cut(s) | 391 |
| BspFNI | CGCG | 1 cut(s) | 408 |
| BspHI | TCATGA | 2 cut(s) | 12, 136 |
| BspLI | GGNNCC | 2 cut(s) | 147, 220 |
| BspT107I | GGYRCC | 1 cut(s) | 218 |
| BsrDI | GCAATG | 1 cut(s) | 303 |
| BsrI | ACTGG | 2 cut(s) | 41, 261 |
| BssHII | GCGCGC | 1 cut(s) | 406 |
| BssMI | GATC | 1 cut(s) | 97 |
| BssNI | GRCGYC | 1 cut(s) | 152 |
| Bst6I | CTCTTC | 1 cut(s) | 270 |
| BstACI | GRCGYC | 1 cut(s) | 152 |
| BstC8I | GCNNGC | 1 cut(s) | 408 |
| BstDEI | CTNAG | 1 cut(s) | 399 |
| BstF5I | GGATG | 3 cut(s) | 304, 328, 382 |
| BstFNI | CGCG | 1 cut(s) | 408 |
| BstH2I | RGCGCY | 1 cut(s) | 128 |
| BstHHI | GCGC | 4 cut(s) | 127, 262, 408, 410 |
| BstKTI | GATC | 1 cut(s) | 100 |
| BstMBI | GATC | 1 cut(s) | 97 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 46, 227, 257 |
| BstUI | CGCG | 1 cut(s) | 408 |
| BsuRI | GGCC | 2 cut(s) | 5, 251 |
| BtsCI | GGATG | 3 cut(s) | 304, 328, 382 |
| BtsI | GCAGTG | 1 cut(s) | 252 |
| BtsIMutI | CAGTG | 2 cut(s) | 234, 252 |
| Cac8I | GCNNGC | 1 cut(s) | 408 |
| CciI | TCATGA | 2 cut(s) | 12, 136 |
| CfoI | GCGC | 4 cut(s) | 127, 262, 408, 410 |
| Cfr13I | GGNCC | 1 cut(s) | 250 |
| Csp6I | GTAC | 1 cut(s) | 44 |
| CviAII | CATG | 3 cut(s) | 13, 137, 426 |
| CviJI | RGCY | 6 cut(s) | 5, 74, 251, 328, 387, 398 |
| CviKI_1 | RGCY | 6 cut(s) | 5, 74, 251, 328, 387, 398 |
| CviQI | GTAC | 1 cut(s) | 44 |
| DdeI | CTNAG | 1 cut(s) | 399 |
| DpnI | GATC | 1 cut(s) | 99 |
| DpnII | GATC | 1 cut(s) | 97 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 270 |
| EarI | CTCTTC | 1 cut(s) | 270 |
| EcoRI | GAATTC | 1 cut(s) | 201 |
| FaeI | CATG | 3 cut(s) | 16, 140, 429 |
| FaiI | YATR | 8 cut(s) | 14, 23, 138, 174, 198, 287, 427, 442 |
| FatI | CATG | 3 cut(s) | 12, 136, 425 |
| FbaI | TGATCA | 1 cut(s) | 97 |
| FokI | GGATG | 3 cut(s) | 311, 335, 389 |
| FspBI | CTAG | 2 cut(s) | 357, 384 |
| GlaI | GCGC | 4 cut(s) | 126, 261, 407, 409 |
| HaeII | RGCGCY | 1 cut(s) | 128 |
| HaeIII | GGCC | 2 cut(s) | 5, 251 |
| HhaI | GCGC | 4 cut(s) | 127, 262, 408, 410 |
| Hin1I | GRCGYC | 1 cut(s) | 152 |
| Hin1II | CATG | 3 cut(s) | 16, 140, 429 |
| Hin6I | GCGC | 4 cut(s) | 125, 260, 406, 408 |
| HinP1I | GCGC | 4 cut(s) | 125, 260, 406, 408 |
| HindIII | AAGCTT | 1 cut(s) | 72 |
| HinfI | GANTC | 1 cut(s) | 380 |
| HphI | GGTGA | 1 cut(s) | 92 |
| Hpy188I | TCNGA | 2 cut(s) | 97, 150 |
| Hpy188III | TCNNGA | 3 cut(s) | 13, 137, 189 |
| Hpy99I | CGWCG | 1 cut(s) | 154 |
| HpyCH4IV | ACGT | 2 cut(s) | 152, 313 |
| HpyCH4V | TGCA | 1 cut(s) | 245 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 46, 227, 257 |
| HpyF3I | CTNAG | 1 cut(s) | 399 |
| HpySE526I | ACGT | 2 cut(s) | 152, 313 |
| Hsp92I | GRCGYC | 1 cut(s) | 152 |
| Hsp92II | CATG | 3 cut(s) | 16, 140, 429 |
| HspAI | GCGC | 4 cut(s) | 125, 260, 406, 408 |
| Ksp22I | TGATCA | 1 cut(s) | 97 |
| Kzo9I | GATC | 1 cut(s) | 97 |
| LmnI | GCTCC | 1 cut(s) | 403 |
| LpnPI | CCDG | 6 cut(s) | 54, 135, 174, 240, 242, 424 |
| LweI | GCATC | 1 cut(s) | 289 |
| MaeI | CTAG | 2 cut(s) | 357, 384 |
| MaeII | ACGT | 2 cut(s) | 152, 313 |
| MalI | GATC | 1 cut(s) | 99 |
| MboI | GATC | 1 cut(s) | 97 |
| MboII | GAAGA | 1 cut(s) | 287 |
| MfeI | CAATTG | 3 cut(s) | 263, 338, 418 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 4 cut(s) | 201, 263, 338, 418 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MmeI | TCCRAC | 3 cut(s) | 102, 173, 276 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MslI | CAYNNNNRTG | 1 cut(s) | 11 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MunI | CAATTG | 3 cut(s) | 263, 338, 418 |
| MvnI | CGCG | 1 cut(s) | 408 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 46, 227, 257 |
| NdeII | GATC | 1 cut(s) | 97 |
| NlaIII | CATG | 3 cut(s) | 16, 140, 429 |
| NlaIV | GGNNCC | 2 cut(s) | 147, 220 |
| PagI | TCATGA | 2 cut(s) | 12, 136 |
| PauI | GCGCGC | 1 cut(s) | 406 |
| PfeI | GAWTC | 1 cut(s) | 380 |
| PsiI | TTATAA | 1 cut(s) | 442 |
| PspN4I | GGNNCC | 2 cut(s) | 147, 220 |
| PspPI | GGNCC | 1 cut(s) | 250 |
| PteI | GCGCGC | 1 cut(s) | 406 |
| RsaI | GTAC | 1 cut(s) | 45 |
| RsaNI | GTAC | 1 cut(s) | 44 |
| RseI | CAYNNNNRTG | 1 cut(s) | 11 |
| Sau3AI | GATC | 1 cut(s) | 97 |
| Sau96I | GGNCC | 1 cut(s) | 250 |
| ScaI | AGTACT | 1 cut(s) | 45 |
| SetI | ASST | 6 cut(s) | 76, 144, 155, 316, 330, 389 |
| SfaNI | GCATC | 1 cut(s) | 289 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 11 |
| SpeI | ACTAGT | 1 cut(s) | 356 |
| Sse9I | AATT | 4 cut(s) | 201, 263, 338, 418 |
| SsiI | CCGC | 1 cut(s) | 281 |
| SspI | AATATT | 1 cut(s) | 214 |
| SspMI | CTAG | 2 cut(s) | 357, 384 |
| TaiI | ACGT | 2 cut(s) | 155, 316 |
| TasI | AATT | 4 cut(s) | 201, 263, 338, 418 |
| TatI | WGTACW | 1 cut(s) | 43 |
| TfiI | GAWTC | 1 cut(s) | 380 |
| TscAI | CASTG | 2 cut(s) | 241, 252 |
| TspDTI | ATGAA | 4 cut(s) | 29, 125, 161, 414 |
| TspRI | CASTG | 2 cut(s) | 241, 252 |
| XapI | RAATTY | 1 cut(s) | 201 |
| XspI | CTAG | 2 cut(s) | 357, 384 |
| ZraI | GACGTC | 1 cut(s) | 153 |
| ZrmI | AGTACT | 1 cut(s) | 45 |