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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 157 |
| AciI | CCGC | 3 cut(s) | 155, 518, 637 |
| AclI | AACGTT | 1 cut(s) | 253 |
| AcoI | YGGCCR | 1 cut(s) | 64 |
| AcsI | RAATTY | 1 cut(s) | 536 |
| AcuI | CTGAAG | 1 cut(s) | 396 |
| AfaI | GTAC | 1 cut(s) | 60 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 218, 373 |
| AflII | CTTAAG | 1 cut(s) | 38 |
| AgsI | TTSAA | 3 cut(s) | 89, 259, 575 |
| AhlI | ACTAGT | 1 cut(s) | 383 |
| AjnI | CCWGG | 3 cut(s) | 66, 421, 465 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 251, 283 |
| AleI | CACNNNNGTG | 1 cut(s) | 479 |
| AluBI | AGCT | 5 cut(s) | 202, 266, 491, 571, 593 |
| AluI | AGCT | 5 cut(s) | 202, 266, 491, 571, 593 |
| Alw21I | GWGCWC | 1 cut(s) | 441 |
| Alw26I | GTCTC | 2 cut(s) | 324, 328 |
| Alw44I | GTGCAC | 1 cut(s) | 437 |
| AoxI | GGCC | 4 cut(s) | 64, 150, 364, 468 |
| ApaLI | GTGCAC | 1 cut(s) | 437 |
| ApoI | RAATTY | 1 cut(s) | 536 |
| AspA2I | CCTAGG | 1 cut(s) | 79 |
| AspS9I | GGNCC | 1 cut(s) | 151 |
| AsuHPI | GGTGA | 3 cut(s) | 319, 435, 545 |
| AvrII | CCTAGG | 1 cut(s) | 79 |
| BaeGI | GKGCMC | 2 cut(s) | 441, 643 |
| BalI | TGGCCA | 1 cut(s) | 66 |
| BauI | CACGAG | 1 cut(s) | 644 |
| Bbv12I | GWGCWC | 1 cut(s) | 441 |
| BccI | CCATC | 1 cut(s) | 31 |
| BceAI | ACGGC | 1 cut(s) | 28 |
| BciT130I | CCWGG | 3 cut(s) | 68, 423, 467 |
| BciVI | GTATCC | 1 cut(s) | 385 |
| BclI | TGATCA | 2 cut(s) | 129, 622 |
| BcoDI | GTCTC | 2 cut(s) | 324, 328 |
| BcuI | ACTAGT | 1 cut(s) | 383 |
| BfaI | CTAG | 4 cut(s) | 80, 191, 368, 384 |
| BfrI | CTTAAG | 1 cut(s) | 38 |
| BfuI | GTATCC | 1 cut(s) | 385 |
| BlnI | CCTAGG | 1 cut(s) | 79 |
| BlpI | GCTNAGC | 1 cut(s) | 660 |
| Bme1390I | CCNGG | 3 cut(s) | 68, 423, 467 |
| BmgT120I | GGNCC | 1 cut(s) | 151 |
| BmiI | GGNNCC | 2 cut(s) | 153, 378 |
| BmrFI | CCNGG | 3 cut(s) | 68, 423, 467 |
| BmsI | GCATC | 1 cut(s) | 289 |
| BpmI | CTGGAG | 1 cut(s) | 528 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 660 |
| BsaJI | CCNNGG | 3 cut(s) | 79, 405, 421 |
| BsaWI | WCCGGW | 1 cut(s) | 304 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 218, 373 |
| Bse1I | ACTGG | 2 cut(s) | 519, 545 |
| Bse3DI | GCAATG | 1 cut(s) | 339 |
| BseBI | CCWGG | 3 cut(s) | 68, 423, 467 |
| BseDI | CCNNGG | 3 cut(s) | 79, 405, 421 |
| BseGI | GGATG | 2 cut(s) | 304, 508 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 218, 373 |
| BseMI | GCAATG | 1 cut(s) | 339 |
| BseMII | CTCAG | 1 cut(s) | 339 |
| BseNI | ACTGG | 2 cut(s) | 519, 545 |
| BseRI | GAGGAG | 1 cut(s) | 542 |
| BseSI | GKGCMC | 2 cut(s) | 441, 643 |
| BseYI | CCCAGC | 1 cut(s) | 491 |
| BsgI | GTGCAG | 2 cut(s) | 377, 668 |
| BshFI | GGCC | 4 cut(s) | 66, 152, 366, 470 |
| BsiHKAI | GWGCWC | 1 cut(s) | 441 |
| BsiSI | CCGG | 1 cut(s) | 305 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 218, 373 |
| BsmAI | GTCTC | 2 cut(s) | 324, 328 |
| BsnI | GGCC | 4 cut(s) | 66, 152, 366, 470 |
| Bsp1286I | GDGCHC | 2 cut(s) | 441, 643 |
| Bsp143I | GATC | 3 cut(s) | 97, 129, 622 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 660 |
| Bsp19I | CCATGG | 1 cut(s) | 405 |
| BspACI | CCGC | 3 cut(s) | 155, 518, 637 |
| BspANI | GGCC | 4 cut(s) | 66, 152, 366, 470 |
| BspCNI | CTCAG | 1 cut(s) | 338 |
| BspLI | GGNNCC | 2 cut(s) | 153, 378 |
| BspTI | CTTAAG | 1 cut(s) | 38 |
| BsrBI | CCGCTC | 1 cut(s) | 157 |
| BsrDI | GCAATG | 1 cut(s) | 339 |
| BsrI | ACTGG | 2 cut(s) | 519, 545 |
| BssECI | CCNNGG | 3 cut(s) | 79, 405, 421 |
| BssMI | GATC | 3 cut(s) | 97, 129, 622 |
| BssSI | CACGAG | 1 cut(s) | 644 |
| BssT1I | CCWWGG | 2 cut(s) | 79, 405 |
| Bst2BI | CACGAG | 1 cut(s) | 644 |
| Bst2UI | CCWGG | 3 cut(s) | 68, 423, 467 |
| Bst4CI | ACNGT | 2 cut(s) | 136, 629 |
| BstAFI | CTTAAG | 1 cut(s) | 38 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 299 |
| BstC8I | GCNNGC | 3 cut(s) | 360, 364, 639 |
| BstDEI | CTNAG | 3 cut(s) | 161, 325, 660 |
| BstDSI | CCRYGG | 1 cut(s) | 405 |
| BstF5I | GGATG | 2 cut(s) | 304, 508 |
| BstKTI | GATC | 3 cut(s) | 100, 132, 625 |
| BstMAI | GTCTC | 2 cut(s) | 324, 328 |
| BstMBI | GATC | 3 cut(s) | 97, 129, 622 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 208, 299, 568 |
| BstNI | CCWGG | 3 cut(s) | 68, 423, 467 |
| BstSCI | CCNGG | 3 cut(s) | 66, 421, 465 |
| BstSLI | GKGCMC | 2 cut(s) | 441, 643 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 481 |
| BsuI | GTATCC | 1 cut(s) | 385 |
| BsuRI | GGCC | 4 cut(s) | 66, 152, 366, 470 |
| BtgI | CCRYGG | 1 cut(s) | 405 |
| BtsCI | GGATG | 2 cut(s) | 304, 508 |
| Cac8I | GCNNGC | 3 cut(s) | 360, 364, 639 |
| Cfr13I | GGNCC | 1 cut(s) | 151 |
| Csp6I | GTAC | 1 cut(s) | 59 |
| CviAII | CATG | 3 cut(s) | 239, 406, 565 |
| CviQI | GTAC | 1 cut(s) | 59 |
| DdeI | CTNAG | 3 cut(s) | 161, 325, 660 |
| DpnI | GATC | 3 cut(s) | 99, 131, 624 |
| DpnII | GATC | 3 cut(s) | 97, 129, 622 |
| EaeI | YGGCCR | 1 cut(s) | 64 |
| EciI | GGCGGA | 1 cut(s) | 533 |
| Eco130I | CCWWGG | 2 cut(s) | 79, 405 |
| Eco147I | AGGCCT | 1 cut(s) | 366 |
| Eco57I | CTGAAG | 1 cut(s) | 396 |
| EcoO109I | RGGNCCY | 1 cut(s) | 151 |
| EcoRII | CCWGG | 3 cut(s) | 66, 421, 465 |
| EcoT14I | CCWWGG | 2 cut(s) | 79, 405 |
| ErhI | CCWWGG | 2 cut(s) | 79, 405 |
| FaeI | CATG | 3 cut(s) | 242, 409, 568 |
| FaiI | YATR | 7 cut(s) | 206, 227, 240, 407, 509, 551, 566 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 32, 64 |
| FatI | CATG | 3 cut(s) | 238, 405, 564 |
| FauI | CCCGC | 2 cut(s) | 162, 630 |
| FbaI | TGATCA | 2 cut(s) | 129, 622 |
| FokI | GGATG | 2 cut(s) | 311, 515 |
| FspBI | CTAG | 4 cut(s) | 80, 191, 368, 384 |
| GsaI | CCCAGC | 1 cut(s) | 495 |
| GsuI | CTGGAG | 1 cut(s) | 528 |
| HaeIII | GGCC | 4 cut(s) | 66, 152, 366, 470 |
| HapII | CCGG | 1 cut(s) | 305 |
| Hin1II | CATG | 3 cut(s) | 242, 409, 568 |
| HindIII | AAGCTT | 3 cut(s) | 200, 264, 569 |
| HinfI | GANTC | 2 cut(s) | 272, 332 |
| HpaII | CCGG | 1 cut(s) | 305 |
| HphI | GGTGA | 3 cut(s) | 319, 435, 545 |
| Hpy166II | GTNNAC | 1 cut(s) | 439 |
| Hpy188I | TCNGA | 3 cut(s) | 148, 502, 622 |
| Hpy188III | TCNNGA | 4 cut(s) | 139, 170, 327, 389 |
| Hpy8I | GTNNAC | 1 cut(s) | 439 |
| HpyAV | CCTTC | 3 cut(s) | 114, 253, 646 |
| HpyCH4III | ACNGT | 2 cut(s) | 136, 629 |
| HpyCH4IV | ACGT | 1 cut(s) | 253 |
| HpyCH4V | TGCA | 4 cut(s) | 344, 358, 439, 649 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 208, 299, 568 |
| HpyF3I | CTNAG | 3 cut(s) | 161, 325, 660 |
| HpySE526I | ACGT | 1 cut(s) | 253 |
| Hsp92II | CATG | 3 cut(s) | 242, 409, 568 |
| Ksp22I | TGATCA | 2 cut(s) | 129, 622 |
| Kzo9I | GATC | 3 cut(s) | 97, 129, 622 |
| LmnI | GCTCC | 5 cut(s) | 162, 307, 319, 382, 520 |
| LweI | GCATC | 1 cut(s) | 289 |
| MaeI | CTAG | 4 cut(s) | 80, 191, 368, 384 |
| MaeII | ACGT | 1 cut(s) | 253 |
| MaeIII | GTNAC | 1 cut(s) | 510 |
| MalI | GATC | 3 cut(s) | 99, 131, 624 |
| MbiI | CCGCTC | 1 cut(s) | 157 |
| MboI | GATC | 3 cut(s) | 97, 129, 622 |
| MboII | GAAGA | 3 cut(s) | 18, 92, 393 |
| MhlI | GDGCHC | 2 cut(s) | 441, 643 |
| MlsI | TGGCCA | 1 cut(s) | 66 |
| MluCI | AATT | 2 cut(s) | 90, 536 |
| MluNI | TGGCCA | 1 cut(s) | 66 |
| MlyI | GAGTC | 1 cut(s) | 326 |
| MmeI | TCCRAC | 3 cut(s) | 96, 175, 404 |
| Mox20I | TGGCCA | 1 cut(s) | 66 |
| MscI | TGGCCA | 1 cut(s) | 66 |
| MseI | TTAA | 1 cut(s) | 39 |
| MslI | CAYNNNNRTG | 1 cut(s) | 479 |
| Msp20I | TGGCCA | 1 cut(s) | 66 |
| MspCI | CTTAAG | 1 cut(s) | 38 |
| MspI | CCGG | 1 cut(s) | 305 |
| MspR9I | CCNGG | 3 cut(s) | 68, 423, 467 |
| MvaI | CCWGG | 3 cut(s) | 68, 423, 467 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 208, 299, 568 |
| NcoI | CCATGG | 1 cut(s) | 405 |
| NdeII | GATC | 3 cut(s) | 97, 129, 622 |
| NlaIII | CATG | 3 cut(s) | 242, 409, 568 |
| NlaIV | GGNNCC | 2 cut(s) | 153, 378 |
| OliI | CACNNNNGTG | 1 cut(s) | 479 |
| PceI | AGGCCT | 1 cut(s) | 366 |
| PfeI | GAWTC | 1 cut(s) | 272 |
| PleI | GAGTC | 1 cut(s) | 326 |
| PpsI | GAGTC | 1 cut(s) | 326 |
| Psp1406I | AACGTT | 1 cut(s) | 253 |
| Psp6I | CCWGG | 3 cut(s) | 66, 421, 465 |
| PspFI | CCCAGC | 1 cut(s) | 491 |
| PspGI | CCWGG | 3 cut(s) | 66, 421, 465 |
| PspN4I | GGNNCC | 2 cut(s) | 153, 378 |
| PspPI | GGNCC | 1 cut(s) | 151 |
| RsaI | GTAC | 1 cut(s) | 60 |
| RsaNI | GTAC | 1 cut(s) | 59 |
| RseI | CAYNNNNRTG | 1 cut(s) | 479 |
| SaqAI | TTAA | 1 cut(s) | 39 |
| Sau3AI | GATC | 3 cut(s) | 97, 129, 622 |
| Sau96I | GGNCC | 1 cut(s) | 151 |
| SchI | GAGTC | 1 cut(s) | 326 |
| ScrFI | CCNGG | 3 cut(s) | 68, 423, 467 |
| SduI | GDGCHC | 2 cut(s) | 441, 643 |
| SfaNI | GCATC | 1 cut(s) | 289 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 479 |
| SmlI | CTYRAG | 1 cut(s) | 38 |
| SmoI | CTYRAG | 1 cut(s) | 38 |
| SpeI | ACTAGT | 1 cut(s) | 383 |
| Sse9I | AATT | 2 cut(s) | 90, 536 |
| SseBI | AGGCCT | 1 cut(s) | 366 |
| SsiI | CCGC | 3 cut(s) | 155, 518, 637 |
| SspMI | CTAG | 4 cut(s) | 80, 191, 368, 384 |
| StuI | AGGCCT | 1 cut(s) | 366 |
| StyD4I | CCNGG | 3 cut(s) | 66, 421, 465 |
| StyI | CCWWGG | 2 cut(s) | 79, 405 |
| TaaI | ACNGT | 2 cut(s) | 136, 629 |
| TaiI | ACGT | 1 cut(s) | 256 |
| TasI | AATT | 2 cut(s) | 90, 536 |
| TatI | WGTACW | 1 cut(s) | 58 |
| TfiI | GAWTC | 1 cut(s) | 272 |
| Tru1I | TTAA | 1 cut(s) | 39 |
| Tru9I | TTAA | 1 cut(s) | 39 |
| TspDTI | ATGAA | 2 cut(s) | 255, 581 |
| TspGWI | ACGGA | 1 cut(s) | 138 |
| Vha464I | CTTAAG | 1 cut(s) | 38 |
| VneI | GTGCAC | 1 cut(s) | 437 |
| XapI | RAATTY | 1 cut(s) | 536 |
| XmaJI | CCTAGG | 1 cut(s) | 79 |
| XspI | CTAG | 4 cut(s) | 80, 191, 368, 384 |