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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 444 |
| AatII | GACGTC | 1 cut(s) | 161 |
| AccB1I | GGYRCC | 3 cut(s) | 4, 224, 436 |
| AccII | CGCG | 1 cut(s) | 611 |
| AciI | CCGC | 1 cut(s) | 287 |
| AcoI | YGGCCR | 1 cut(s) | 600 |
| AcsI | RAATTY | 4 cut(s) | 38, 207, 489, 577 |
| AcyI | GRCGYC | 1 cut(s) | 158 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 551 |
| AflIII | ACRYGT | 1 cut(s) | 319 |
| AgsI | TTSAA | 4 cut(s) | 212, 281, 589, 626 |
| AhlI | ACTAGT | 1 cut(s) | 362 |
| AjiI | CACGTC | 1 cut(s) | 56 |
| AluBI | AGCT | 1 cut(s) | 393 |
| AluI | AGCT | 1 cut(s) | 393 |
| Alw26I | GTCTC | 1 cut(s) | 55 |
| AoxI | GGCC | 2 cut(s) | 255, 600 |
| ApoI | RAATTY | 4 cut(s) | 38, 207, 489, 577 |
| AspLEI | GCGC | 4 cut(s) | 133, 268, 611, 613 |
| AspS9I | GGNCC | 2 cut(s) | 256, 484 |
| AsuHPI | GGTGA | 3 cut(s) | 98, 605, 665 |
| AvaII | GGWCC | 1 cut(s) | 484 |
| BaeGI | GKGCMC | 1 cut(s) | 9 |
| BalI | TGGCCA | 1 cut(s) | 602 |
| BanI | GGYRCC | 3 cut(s) | 4, 224, 436 |
| BbvCI | CCTCAGC | 1 cut(s) | 405 |
| BceAI | ACGGC | 1 cut(s) | 319 |
| BclI | TGATCA | 1 cut(s) | 103 |
| BcoDI | GTCTC | 1 cut(s) | 55 |
| BcuI | ACTAGT | 1 cut(s) | 362 |
| BfaI | CTAG | 3 cut(s) | 363, 390, 656 |
| BfoI | RGCGCY | 1 cut(s) | 134 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 263 |
| Bme18I | GGWCC | 1 cut(s) | 484 |
| BmgBI | CACGTC | 1 cut(s) | 56 |
| BmgT120I | GGNCC | 2 cut(s) | 256, 484 |
| BmiI | GGNNCC | 4 cut(s) | 6, 226, 411, 438 |
| BmrI | ACTGGG | 1 cut(s) | 670 |
| BmuI | ACTGGG | 1 cut(s) | 670 |
| Bpu10I | CCTNAGC | 1 cut(s) | 405 |
| BpuEI | CTTGAG | 1 cut(s) | 433 |
| BsaHI | GRCGYC | 1 cut(s) | 158 |
| BsaWI | WCCGGW | 1 cut(s) | 535 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 551 |
| Bse1I | ACTGG | 2 cut(s) | 267, 665 |
| Bse3DI | GCAATG | 1 cut(s) | 309 |
| BseGI | GGATG | 4 cut(s) | 310, 334, 388, 670 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 551 |
| BseMI | GCAATG | 1 cut(s) | 309 |
| BseMII | CTCAG | 2 cut(s) | 396, 628 |
| BseNI | ACTGG | 2 cut(s) | 267, 665 |
| BsePI | GCGCGC | 1 cut(s) | 609 |
| BseRI | GAGGAG | 5 cut(s) | 311, 386, 422, 494, 534 |
| BseSI | GKGCMC | 1 cut(s) | 9 |
| BsgI | GTGCAG | 2 cut(s) | 53, 270 |
| Bsh1236I | CGCG | 1 cut(s) | 611 |
| BshFI | GGCC | 2 cut(s) | 257, 602 |
| BshNI | GGYRCC | 3 cut(s) | 4, 224, 436 |
| BsiSI | CCGG | 1 cut(s) | 536 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 551 |
| BsmAI | GTCTC | 1 cut(s) | 55 |
| BsnI | GGCC | 2 cut(s) | 257, 602 |
| Bsp1286I | GDGCHC | 1 cut(s) | 9 |
| Bsp143I | GATC | 3 cut(s) | 43, 103, 469 |
| BspACI | CCGC | 1 cut(s) | 287 |
| BspANI | GGCC | 2 cut(s) | 257, 602 |
| BspCNI | CTCAG | 2 cut(s) | 397, 627 |
| BspFNI | CGCG | 1 cut(s) | 611 |
| BspHI | TCATGA | 1 cut(s) | 142 |
| BspLI | GGNNCC | 4 cut(s) | 6, 226, 411, 438 |
| BspT107I | GGYRCC | 3 cut(s) | 4, 224, 436 |
| BsrDI | GCAATG | 1 cut(s) | 309 |
| BsrI | ACTGG | 2 cut(s) | 267, 665 |
| BssHII | GCGCGC | 1 cut(s) | 609 |
| BssMI | GATC | 3 cut(s) | 43, 103, 469 |
| BssNI | GRCGYC | 1 cut(s) | 158 |
| Bst6I | CTCTTC | 1 cut(s) | 276 |
| BstACI | GRCGYC | 1 cut(s) | 158 |
| BstC8I | GCNNGC | 2 cut(s) | 78, 611 |
| BstDEI | CTNAG | 2 cut(s) | 405, 614 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 549 |
| BstF5I | GGATG | 4 cut(s) | 310, 334, 388, 670 |
| BstFNI | CGCG | 1 cut(s) | 611 |
| BstH2I | RGCGCY | 1 cut(s) | 134 |
| BstHHI | GCGC | 4 cut(s) | 133, 268, 611, 613 |
| BstKTI | GATC | 3 cut(s) | 46, 106, 472 |
| BstMAI | GTCTC | 1 cut(s) | 55 |
| BstMBI | GATC | 3 cut(s) | 43, 103, 469 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 233, 263, 608 |
| BstSLI | GKGCMC | 1 cut(s) | 9 |
| BstUI | CGCG | 1 cut(s) | 611 |
| BsuRI | GGCC | 2 cut(s) | 257, 602 |
| BtrI | CACGTC | 1 cut(s) | 56 |
| BtsCI | GGATG | 4 cut(s) | 310, 334, 388, 670 |
| BtsI | GCAGTG | 1 cut(s) | 258 |
| BtsIMutI | CAGTG | 2 cut(s) | 258, 622 |
| Cac8I | GCNNGC | 2 cut(s) | 78, 611 |
| CciI | TCATGA | 1 cut(s) | 142 |
| CfoI | GCGC | 4 cut(s) | 133, 268, 611, 613 |
| Cfr13I | GGNCC | 2 cut(s) | 256, 484 |
| CviAII | CATG | 2 cut(s) | 143, 428 |
| CviJI | RGCY | 7 cut(s) | 80, 257, 334, 393, 404, 412, 602 |
| CviKI_1 | RGCY | 7 cut(s) | 80, 257, 334, 393, 404, 412, 602 |
| DdeI | CTNAG | 2 cut(s) | 405, 614 |
| DpnI | GATC | 3 cut(s) | 45, 105, 471 |
| DpnII | GATC | 3 cut(s) | 43, 103, 469 |
| EaeI | YGGCCR | 1 cut(s) | 600 |
| Eam1104I | CTCTTC | 1 cut(s) | 276 |
| EarI | CTCTTC | 1 cut(s) | 276 |
| Eco47I | GGWCC | 1 cut(s) | 484 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 549 |
| EcoRI | GAATTC | 2 cut(s) | 207, 577 |
| FaeI | CATG | 2 cut(s) | 146, 431 |
| FaiI | YATR | 7 cut(s) | 144, 204, 293, 429, 444, 633, 641 |
| FatI | CATG | 2 cut(s) | 142, 427 |
| FbaI | TGATCA | 1 cut(s) | 103 |
| FokI | GGATG | 4 cut(s) | 317, 341, 395, 677 |
| FspBI | CTAG | 3 cut(s) | 363, 390, 656 |
| GlaI | GCGC | 4 cut(s) | 132, 267, 610, 612 |
| HaeII | RGCGCY | 1 cut(s) | 134 |
| HaeIII | GGCC | 2 cut(s) | 257, 602 |
| HapII | CCGG | 1 cut(s) | 536 |
| HhaI | GCGC | 4 cut(s) | 133, 268, 611, 613 |
| Hin1I | GRCGYC | 1 cut(s) | 158 |
| Hin1II | CATG | 2 cut(s) | 146, 431 |
| Hin6I | GCGC | 4 cut(s) | 131, 266, 609, 611 |
| HinP1I | GCGC | 4 cut(s) | 131, 266, 609, 611 |
| HinfI | GANTC | 2 cut(s) | 386, 532 |
| HpaII | CCGG | 1 cut(s) | 536 |
| HphI | GGTGA | 3 cut(s) | 98, 605, 665 |
| Hpy166II | GTNNAC | 1 cut(s) | 637 |
| Hpy188I | TCNGA | 7 cut(s) | 103, 156, 474, 507, 520, 531, 648 |
| Hpy188III | TCNNGA | 5 cut(s) | 59, 143, 195, 458, 656 |
| Hpy8I | GTNNAC | 1 cut(s) | 637 |
| Hpy99I | CGWCG | 1 cut(s) | 160 |
| HpyCH4IV | ACGT | 3 cut(s) | 55, 158, 319 |
| HpyCH4V | TGCA | 2 cut(s) | 34, 251 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 233, 263, 608 |
| HpyF3I | CTNAG | 2 cut(s) | 405, 614 |
| HpySE526I | ACGT | 3 cut(s) | 55, 158, 319 |
| Hsp92I | GRCGYC | 1 cut(s) | 158 |
| Hsp92II | CATG | 2 cut(s) | 146, 431 |
| HspAI | GCGC | 4 cut(s) | 131, 266, 609, 611 |
| Ksp22I | TGATCA | 1 cut(s) | 103 |
| Kzo9I | GATC | 3 cut(s) | 43, 103, 469 |
| LmnI | GCTCC | 1 cut(s) | 409 |
| MaeI | CTAG | 3 cut(s) | 363, 390, 656 |
| MaeII | ACGT | 3 cut(s) | 55, 158, 319 |
| MaeIII | GTNAC | 1 cut(s) | 538 |
| MalI | GATC | 3 cut(s) | 45, 105, 471 |
| MboI | GATC | 3 cut(s) | 43, 103, 469 |
| MboII | GAAGA | 1 cut(s) | 293 |
| MfeI | CAATTG | 3 cut(s) | 344, 420, 604 |
| MhlI | GDGCHC | 1 cut(s) | 9 |
| MlsI | TGGCCA | 1 cut(s) | 602 |
| MluNI | TGGCCA | 1 cut(s) | 602 |
| MlyI | GAGTC | 1 cut(s) | 526 |
| MmeI | TCCRAC | 3 cut(s) | 108, 179, 282 |
| Mox20I | TGGCCA | 1 cut(s) | 602 |
| MscI | TGGCCA | 1 cut(s) | 602 |
| Msp20I | TGGCCA | 1 cut(s) | 602 |
| MspI | CCGG | 1 cut(s) | 536 |
| MunI | CAATTG | 3 cut(s) | 344, 420, 604 |
| MvnI | CGCG | 1 cut(s) | 611 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 233, 263, 608 |
| NdeII | GATC | 3 cut(s) | 43, 103, 469 |
| NlaIII | CATG | 2 cut(s) | 146, 431 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 226, 411, 438 |
| PagI | TCATGA | 1 cut(s) | 142 |
| PauI | GCGCGC | 1 cut(s) | 609 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 52 |
| PfeI | GAWTC | 1 cut(s) | 386 |
| PleI | GAGTC | 1 cut(s) | 526 |
| PpsI | GAGTC | 1 cut(s) | 526 |
| PsiI | TTATAA | 1 cut(s) | 444 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 226, 411, 438 |
| PspPI | GGNCC | 2 cut(s) | 256, 484 |
| PteI | GCGCGC | 1 cut(s) | 609 |
| Sau3AI | GATC | 3 cut(s) | 43, 103, 469 |
| Sau96I | GGNCC | 2 cut(s) | 256, 484 |
| SchI | GAGTC | 1 cut(s) | 526 |
| SduI | GDGCHC | 1 cut(s) | 9 |
| SetI | ASST | 8 cut(s) | 58, 150, 161, 322, 395, 561, 595, 673 |
| SinI | GGWCC | 1 cut(s) | 484 |
| SmlI | CTYRAG | 2 cut(s) | 15, 448 |
| SmoI | CTYRAG | 2 cut(s) | 15, 448 |
| SpeI | ACTAGT | 1 cut(s) | 362 |
| SsiI | CCGC | 1 cut(s) | 287 |
| SspI | AATATT | 1 cut(s) | 220 |
| SspMI | CTAG | 3 cut(s) | 363, 390, 656 |
| TaiI | ACGT | 3 cut(s) | 58, 161, 322 |
| TaqI | TCGA | 2 cut(s) | 67, 499 |
| TfiI | GAWTC | 1 cut(s) | 386 |
| TscAI | CASTG | 2 cut(s) | 258, 622 |
| TspDTI | ATGAA | 3 cut(s) | 131, 416, 681 |
| TspRI | CASTG | 2 cut(s) | 258, 622 |
| VpaK11BI | GGWCC | 1 cut(s) | 484 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 549 |
| XapI | RAATTY | 4 cut(s) | 38, 207, 489, 577 |
| XbaI | TCTAGA | 1 cut(s) | 655 |
| XspI | CTAG | 3 cut(s) | 363, 390, 656 |
| ZraI | GACGTC | 1 cut(s) | 159 |