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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 496 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 203, 344 |
| AgeI | ACCGGT | 1 cut(s) | 270 |
| AgsI | TTSAA | 1 cut(s) | 472 |
| AhlI | ACTAGT | 1 cut(s) | 50 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 272, 304, 467, 499 |
| AluBI | AGCT | 5 cut(s) | 89, 104, 143, 342, 455 |
| AluI | AGCT | 5 cut(s) | 89, 104, 143, 342, 455 |
| Ama87I | CYCGRG | 1 cut(s) | 337 |
| ApeKI | GCWGC | 1 cut(s) | 365 |
| AsiGI | ACCGGT | 1 cut(s) | 270 |
| AspS9I | GGNCC | 1 cut(s) | 347 |
| AsuC2I | CCSGG | 1 cut(s) | 520 |
| AsuHPI | GGTGA | 2 cut(s) | 187, 251 |
| AvaI | CYCGRG | 1 cut(s) | 337 |
| AvaII | GGWCC | 1 cut(s) | 347 |
| BbsI | GAAGAC | 1 cut(s) | 72 |
| BbvCI | CCTCAGC | 1 cut(s) | 90 |
| BbvI | GCAGC | 1 cut(s) | 377 |
| BccI | CCATC | 1 cut(s) | 175 |
| BclI | TGATCA | 1 cut(s) | 169 |
| BcnI | CCSGG | 1 cut(s) | 520 |
| BcuI | ACTAGT | 1 cut(s) | 50 |
| BfaI | CTAG | 4 cut(s) | 51, 360, 492, 498 |
| BisI | GCNGC | 1 cut(s) | 366 |
| BlsI | GCNGC | 1 cut(s) | 367 |
| BmcAI | AGTACT | 1 cut(s) | 496 |
| Bme1390I | CCNGG | 1 cut(s) | 520 |
| Bme18I | GGWCC | 1 cut(s) | 347 |
| BmeT110I | CYCGRG | 1 cut(s) | 337 |
| BmgT120I | GGNCC | 1 cut(s) | 347 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BmrFI | CCNGG | 1 cut(s) | 520 |
| BpiI | GAAGAC | 1 cut(s) | 72 |
| Bpu10I | CCTNAGC | 2 cut(s) | 90, 456 |
| BpuMI | CCSGG | 1 cut(s) | 520 |
| BsaWI | WCCGGW | 2 cut(s) | 7, 270 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 304, 334, 396, 426 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 203, 344 |
| Bse118I | RCCGGY | 1 cut(s) | 270 |
| BseGI | GGATG | 4 cut(s) | 16, 223, 298, 385 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 203, 344 |
| BseMII | CTCAG | 2 cut(s) | 81, 470 |
| BseXI | GCAGC | 1 cut(s) | 377 |
| BshTI | ACCGGT | 1 cut(s) | 270 |
| BsiHKCI | CYCGRG | 1 cut(s) | 337 |
| BsiSI | CCGG | 3 cut(s) | 8, 271, 520 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 203, 344 |
| BsoBI | CYCGRG | 1 cut(s) | 337 |
| Bsp143I | GATC | 1 cut(s) | 169 |
| BspCNI | CTCAG | 2 cut(s) | 82, 469 |
| BspHI | TCATGA | 1 cut(s) | 58 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BsrFI | RCCGGY | 1 cut(s) | 270 |
| BssAI | RCCGGY | 1 cut(s) | 270 |
| BssMI | GATC | 1 cut(s) | 169 |
| Bst4CI | ACNGT | 3 cut(s) | 116, 316, 419 |
| Bst6I | CTCTTC | 1 cut(s) | 35 |
| BstC8I | GCNNGC | 1 cut(s) | 332 |
| BstDEI | CTNAG | 2 cut(s) | 90, 456 |
| BstF5I | GGATG | 4 cut(s) | 16, 223, 298, 385 |
| BstKTI | GATC | 1 cut(s) | 172 |
| BstMBI | GATC | 1 cut(s) | 169 |
| BstSCI | CCNGG | 1 cut(s) | 518 |
| BstV1I | GCAGC | 1 cut(s) | 377 |
| BstV2I | GAAGAC | 1 cut(s) | 72 |
| BtsCI | GGATG | 4 cut(s) | 16, 223, 298, 385 |
| Cac8I | GCNNGC | 1 cut(s) | 332 |
| CciI | TCATGA | 1 cut(s) | 58 |
| Cfr10I | RCCGGY | 1 cut(s) | 270 |
| Cfr13I | GGNCC | 1 cut(s) | 347 |
| Csp6I | GTAC | 1 cut(s) | 495 |
| CspAI | ACCGGT | 1 cut(s) | 270 |
| CviAII | CATG | 1 cut(s) | 59 |
| CviQI | GTAC | 1 cut(s) | 495 |
| DdeI | CTNAG | 2 cut(s) | 90, 456 |
| DpnI | GATC | 1 cut(s) | 171 |
| DpnII | GATC | 1 cut(s) | 169 |
| Eam1104I | CTCTTC | 1 cut(s) | 35 |
| EarI | CTCTTC | 1 cut(s) | 35 |
| Eco47I | GGWCC | 1 cut(s) | 347 |
| Eco88I | CYCGRG | 1 cut(s) | 337 |
| FaeI | CATG | 1 cut(s) | 62 |
| FaiI | YATR | 6 cut(s) | 60, 69, 110, 153, 162, 326 |
| FatI | CATG | 1 cut(s) | 58 |
| FbaI | TGATCA | 1 cut(s) | 169 |
| Fnu4HI | GCNGC | 1 cut(s) | 366 |
| FokI | GGATG | 4 cut(s) | 3, 230, 305, 392 |
| Fsp4HI | GCNGC | 1 cut(s) | 366 |
| FspBI | CTAG | 4 cut(s) | 51, 360, 492, 498 |
| GluI | GCNGC | 1 cut(s) | 366 |
| HapII | CCGG | 3 cut(s) | 8, 271, 520 |
| Hin1II | CATG | 1 cut(s) | 62 |
| HincII | GTYRAC | 1 cut(s) | 415 |
| HindII | GTYRAC | 1 cut(s) | 415 |
| HinfI | GANTC | 1 cut(s) | 356 |
| HpaII | CCGG | 3 cut(s) | 8, 271, 520 |
| HphI | GGTGA | 2 cut(s) | 187, 251 |
| Hpy166II | GTNNAC | 2 cut(s) | 350, 415 |
| Hpy188I | TCNGA | 2 cut(s) | 148, 229 |
| Hpy188III | TCNNGA | 2 cut(s) | 59, 360 |
| Hpy8I | GTNNAC | 2 cut(s) | 350, 415 |
| HpyAV | CCTTC | 2 cut(s) | 128, 525 |
| HpyCH4III | ACNGT | 3 cut(s) | 116, 316, 419 |
| HpyF3I | CTNAG | 2 cut(s) | 90, 456 |
| Hsp92II | CATG | 1 cut(s) | 62 |
| Ksp22I | TGATCA | 1 cut(s) | 169 |
| Kzo9I | GATC | 1 cut(s) | 169 |
| LmnI | GCTCC | 2 cut(s) | 10, 325 |
| LpnPI | CCDG | 8 cut(s) | 21, 158, 284, 338, 344, 441, 443, 533 |
| Lsp1109I | GCAGC | 1 cut(s) | 377 |
| MaeI | CTAG | 4 cut(s) | 51, 360, 492, 498 |
| MaeIII | GTNAC | 2 cut(s) | 44, 441 |
| MalI | GATC | 1 cut(s) | 171 |
| MboI | GATC | 1 cut(s) | 169 |
| MboII | GAAGA | 5 cut(s) | 52, 72, 308, 419, 484 |
| MnlI | CCTC | 4 cut(s) | 55, 85, 208, 298 |
| MseI | TTAA | 2 cut(s) | 249, 399 |
| MslI | CAYNNNNRTG | 1 cut(s) | 21 |
| MspI | CCGG | 3 cut(s) | 8, 271, 520 |
| MspR9I | CCNGG | 1 cut(s) | 520 |
| NciI | CCSGG | 1 cut(s) | 520 |
| NdeII | GATC | 1 cut(s) | 169 |
| NlaIII | CATG | 1 cut(s) | 62 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| NmuCI | GTSAC | 1 cut(s) | 441 |
| PagI | TCATGA | 1 cut(s) | 58 |
| PfeI | GAWTC | 1 cut(s) | 356 |
| PflFI | GACNNNGTC | 1 cut(s) | 439 |
| PfoI | TCCNGGA | 1 cut(s) | 518 |
| PinAI | ACCGGT | 1 cut(s) | 270 |
| PkrI | GCNGC | 1 cut(s) | 367 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PspPI | GGNCC | 1 cut(s) | 347 |
| PsyI | GACNNNGTC | 1 cut(s) | 439 |
| RsaI | GTAC | 1 cut(s) | 496 |
| RsaNI | GTAC | 1 cut(s) | 495 |
| RseI | CAYNNNNRTG | 1 cut(s) | 21 |
| SaqAI | TTAA | 2 cut(s) | 249, 399 |
| SatI | GCNGC | 1 cut(s) | 366 |
| Sau3AI | GATC | 1 cut(s) | 169 |
| Sau96I | GGNCC | 1 cut(s) | 347 |
| ScaI | AGTACT | 1 cut(s) | 496 |
| ScrFI | CCNGG | 1 cut(s) | 520 |
| SetI | ASST | 9 cut(s) | 31, 66, 91, 106, 139, 145, 177, 344, 457 |
| SinI | GGWCC | 1 cut(s) | 347 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 21 |
| SpeI | ACTAGT | 1 cut(s) | 50 |
| SspI | AATATT | 1 cut(s) | 127 |
| SspMI | CTAG | 4 cut(s) | 51, 360, 492, 498 |
| StyD4I | CCNGG | 1 cut(s) | 518 |
| TaaI | ACNGT | 3 cut(s) | 116, 316, 419 |
| TatI | WGTACW | 1 cut(s) | 494 |
| TfiI | GAWTC | 1 cut(s) | 356 |
| Tru1I | TTAA | 2 cut(s) | 249, 399 |
| Tru9I | TTAA | 2 cut(s) | 249, 399 |
| TseFI | GTSAC | 1 cut(s) | 441 |
| TseI | GCWGC | 1 cut(s) | 365 |
| Tsp45I | GTSAC | 1 cut(s) | 441 |
| TspDTI | ATGAA | 6 cut(s) | 5, 39, 47, 56, 309, 396 |
| TspGWI | ACGGA | 1 cut(s) | 219 |
| Tth111I | GACNNNGTC | 1 cut(s) | 439 |
| VpaK11BI | GGWCC | 1 cut(s) | 347 |
| XbaI | TCTAGA | 1 cut(s) | 359 |
| XspI | CTAG | 4 cut(s) | 51, 360, 492, 498 |
| ZrmI | AGTACT | 1 cut(s) | 496 |