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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 482 |
| AccI | GTMKAC | 1 cut(s) | 216 |
| AclWI | GGATC | 3 cut(s) | 249, 425, 438 |
| AcsI | RAATTY | 2 cut(s) | 208, 344 |
| AfaI | GTAC | 1 cut(s) | 119 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 232 |
| AgsI | TTSAA | 1 cut(s) | 340 |
| AjnI | CCWGG | 1 cut(s) | 478 |
| AluBI | AGCT | 6 cut(s) | 95, 143, 197, 250, 308, 458 |
| AluI | AGCT | 6 cut(s) | 95, 143, 197, 250, 308, 458 |
| AlwI | GGATC | 3 cut(s) | 249, 425, 438 |
| ApoI | RAATTY | 2 cut(s) | 208, 344 |
| AseI | ATTAAT | 2 cut(s) | 276, 452 |
| AspS9I | GGNCC | 1 cut(s) | 223 |
| AvaII | GGWCC | 1 cut(s) | 223 |
| BamHI | GGATCC | 1 cut(s) | 430 |
| BanI | GGYRCC | 1 cut(s) | 482 |
| BccI | CCATC | 1 cut(s) | 421 |
| BciT130I | CCWGG | 1 cut(s) | 480 |
| BclI | TGATCA | 1 cut(s) | 19 |
| BfaI | CTAG | 2 cut(s) | 305, 353 |
| BlpI | GCTNAGC | 1 cut(s) | 96 |
| Bme1390I | CCNGG | 1 cut(s) | 480 |
| Bme18I | GGWCC | 1 cut(s) | 223 |
| BmgT120I | GGNCC | 1 cut(s) | 223 |
| BmiI | GGNNCC | 3 cut(s) | 329, 432, 484 |
| BmrFI | CCNGG | 1 cut(s) | 480 |
| BmrI | ACTGGG | 1 cut(s) | 180 |
| BmsI | GCATC | 2 cut(s) | 42, 411 |
| BmuI | ACTGGG | 1 cut(s) | 180 |
| Bpu10I | CCTNAGC | 1 cut(s) | 132 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 96 |
| BpuEI | CTTGAG | 1 cut(s) | 215 |
| BsaJI | CCNNGG | 1 cut(s) | 395 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 232 |
| Bse1I | ACTGG | 2 cut(s) | 186, 284 |
| Bse3DI | GCAATG | 1 cut(s) | 22 |
| BseBI | CCWGG | 1 cut(s) | 480 |
| BseDI | CCNNGG | 1 cut(s) | 395 |
| BseGI | GGATG | 2 cut(s) | 148, 405 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 232 |
| BseMI | GCAATG | 1 cut(s) | 22 |
| BseMII | CTCAG | 2 cut(s) | 189, 308 |
| BseNI | ACTGG | 2 cut(s) | 186, 284 |
| BshNI | GGYRCC | 1 cut(s) | 482 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 232 |
| BsmI | GAATGC | 1 cut(s) | 467 |
| Bsp143I | GATC | 6 cut(s) | 19, 241, 253, 265, 316, 430 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 96 |
| BspCNI | CTCAG | 2 cut(s) | 190, 307 |
| BspLI | GGNNCC | 3 cut(s) | 329, 432, 484 |
| BspPI | GGATC | 3 cut(s) | 249, 425, 438 |
| BspT107I | GGYRCC | 1 cut(s) | 482 |
| BsrDI | GCAATG | 1 cut(s) | 22 |
| BsrI | ACTGG | 2 cut(s) | 186, 284 |
| BssECI | CCNNGG | 1 cut(s) | 395 |
| BssMI | GATC | 6 cut(s) | 19, 241, 253, 265, 316, 430 |
| BssT1I | CCWWGG | 1 cut(s) | 395 |
| Bst2UI | CCWGG | 1 cut(s) | 480 |
| Bst4CI | ACNGT | 2 cut(s) | 71, 122 |
| BstC8I | GCNNGC | 1 cut(s) | 93 |
| BstDEI | CTNAG | 4 cut(s) | 96, 132, 198, 294 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 230 |
| BstF5I | GGATG | 2 cut(s) | 148, 405 |
| BstKTI | GATC | 6 cut(s) | 22, 244, 256, 268, 319, 433 |
| BstMBI | GATC | 6 cut(s) | 19, 241, 253, 265, 316, 430 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 97 |
| BstNI | CCWGG | 1 cut(s) | 480 |
| BstSCI | CCNGG | 1 cut(s) | 478 |
| BstX2I | RGATCY | 1 cut(s) | 430 |
| BstYI | RGATCY | 1 cut(s) | 430 |
| BtsCI | GGATG | 2 cut(s) | 148, 405 |
| BtsIMutI | CAGTG | 1 cut(s) | 291 |
| Cac8I | GCNNGC | 1 cut(s) | 93 |
| Cfr13I | GGNCC | 1 cut(s) | 223 |
| Csp6I | GTAC | 1 cut(s) | 118 |
| CviQI | GTAC | 1 cut(s) | 118 |
| DdeI | CTNAG | 4 cut(s) | 96, 132, 198, 294 |
| DpnI | GATC | 6 cut(s) | 21, 243, 255, 267, 318, 432 |
| DpnII | GATC | 6 cut(s) | 19, 241, 253, 265, 316, 430 |
| Eco130I | CCWWGG | 1 cut(s) | 395 |
| Eco47I | GGWCC | 1 cut(s) | 223 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 230 |
| EcoO109I | RGGNCCY | 1 cut(s) | 223 |
| EcoRII | CCWGG | 1 cut(s) | 478 |
| EcoT14I | CCWWGG | 1 cut(s) | 395 |
| ErhI | CCWWGG | 1 cut(s) | 395 |
| FaiI | YATR | 3 cut(s) | 325, 419, 437 |
| FbaI | TGATCA | 1 cut(s) | 19 |
| FblI | GTMKAC | 1 cut(s) | 216 |
| FokI | GGATG | 2 cut(s) | 135, 412 |
| FspBI | CTAG | 2 cut(s) | 305, 353 |
| HincII | GTYRAC | 1 cut(s) | 49 |
| HindII | GTYRAC | 1 cut(s) | 49 |
| HinfI | GANTC | 1 cut(s) | 202 |
| HpaI | GTTAAC | 1 cut(s) | 49 |
| Hpy166II | GTNNAC | 2 cut(s) | 49, 217 |
| Hpy188I | TCNGA | 3 cut(s) | 165, 207, 321 |
| Hpy188III | TCNNGA | 1 cut(s) | 245 |
| Hpy8I | GTNNAC | 2 cut(s) | 49, 217 |
| HpyCH4III | ACNGT | 2 cut(s) | 71, 122 |
| HpyCH4V | TGCA | 2 cut(s) | 27, 33 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 97 |
| HpyF3I | CTNAG | 4 cut(s) | 96, 132, 198, 294 |
| Ksp22I | TGATCA | 1 cut(s) | 19 |
| KspAI | GTTAAC | 1 cut(s) | 49 |
| Kzo9I | GATC | 6 cut(s) | 19, 241, 253, 265, 316, 430 |
| LmnI | GCTCC | 1 cut(s) | 247 |
| LpnPI | CCDG | 7 cut(s) | 114, 199, 230, 254, 297, 344, 465 |
| LweI | GCATC | 2 cut(s) | 42, 411 |
| MaeI | CTAG | 2 cut(s) | 305, 353 |
| MaeIII | GTNAC | 1 cut(s) | 286 |
| MalI | GATC | 6 cut(s) | 21, 243, 255, 267, 318, 432 |
| MboI | GATC | 6 cut(s) | 19, 241, 253, 265, 316, 430 |
| MboII | GAAGA | 2 cut(s) | 94, 341 |
| MflI | RGATCY | 1 cut(s) | 430 |
| MluCI | AATT | 5 cut(s) | 52, 208, 258, 344, 444 |
| MnlI | CCTC | 2 cut(s) | 162, 189 |
| MseI | TTAA | 4 cut(s) | 48, 66, 276, 452 |
| MspR9I | CCNGG | 1 cut(s) | 480 |
| Mva1269I | GAATGC | 1 cut(s) | 467 |
| MvaI | CCWGG | 1 cut(s) | 480 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 97 |
| NdeII | GATC | 6 cut(s) | 19, 241, 253, 265, 316, 430 |
| NlaIV | GGNNCC | 3 cut(s) | 329, 432, 484 |
| NmuCI | GTSAC | 1 cut(s) | 286 |
| PctI | GAATGC | 1 cut(s) | 467 |
| PfeI | GAWTC | 1 cut(s) | 202 |
| PflFI | GACNNNGTC | 1 cut(s) | 221 |
| PpuMI | RGGWCCY | 1 cut(s) | 223 |
| PshBI | ATTAAT | 2 cut(s) | 276, 452 |
| Psp5II | RGGWCCY | 1 cut(s) | 223 |
| Psp6I | CCWGG | 1 cut(s) | 478 |
| PspGI | CCWGG | 1 cut(s) | 478 |
| PspN4I | GGNNCC | 3 cut(s) | 329, 432, 484 |
| PspPI | GGNCC | 1 cut(s) | 223 |
| PspPPI | RGGWCCY | 1 cut(s) | 223 |
| PsuI | RGATCY | 1 cut(s) | 430 |
| PsyI | GACNNNGTC | 1 cut(s) | 221 |
| RsaI | GTAC | 1 cut(s) | 119 |
| RsaNI | GTAC | 1 cut(s) | 118 |
| SaqAI | TTAA | 4 cut(s) | 48, 66, 276, 452 |
| Sau3AI | GATC | 6 cut(s) | 19, 241, 253, 265, 316, 430 |
| Sau96I | GGNCC | 1 cut(s) | 223 |
| ScrFI | CCNGG | 1 cut(s) | 480 |
| SfaNI | GCATC | 2 cut(s) | 42, 411 |
| SinI | GGWCC | 1 cut(s) | 223 |
| SmlI | CTYRAG | 1 cut(s) | 230 |
| SmoI | CTYRAG | 1 cut(s) | 230 |
| Sse9I | AATT | 5 cut(s) | 52, 208, 258, 344, 444 |
| SspMI | CTAG | 2 cut(s) | 305, 353 |
| StyD4I | CCNGG | 1 cut(s) | 478 |
| StyI | CCWWGG | 1 cut(s) | 395 |
| TaaI | ACNGT | 2 cut(s) | 71, 122 |
| TaqI | TCGA | 2 cut(s) | 256, 264 |
| TasI | AATT | 5 cut(s) | 52, 208, 258, 344, 444 |
| TfiI | GAWTC | 1 cut(s) | 202 |
| Tru1I | TTAA | 4 cut(s) | 48, 66, 276, 452 |
| Tru9I | TTAA | 4 cut(s) | 48, 66, 276, 452 |
| TscAI | CASTG | 1 cut(s) | 291 |
| TseFI | GTSAC | 1 cut(s) | 286 |
| Tsp45I | GTSAC | 1 cut(s) | 286 |
| TspDTI | ATGAA | 2 cut(s) | 419, 438 |
| TspRI | CASTG | 1 cut(s) | 291 |
| Tth111I | GACNNNGTC | 1 cut(s) | 221 |
| VpaK11BI | GGWCC | 1 cut(s) | 223 |
| VspI | ATTAAT | 2 cut(s) | 276, 452 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 230 |
| XapI | RAATTY | 2 cut(s) | 208, 344 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 384 |
| XmiI | GTMKAC | 1 cut(s) | 216 |
| XspI | CTAG | 2 cut(s) | 305, 353 |