Rmu_sc0005065.1_g000053

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005065.1
OG0000044
Physical Location & Seq
Forward (+)
238144 .. 241383
3240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005065.1_g000053.1.cds

Sequence Viewer

Length: 1470 bp
atgcacagccaatggcaacctgccacgtctccagccgcacgccgctacactccaaaaaactggttcgcacgctcctgcagggcttgtcggtgctacgtgacaagcgactgtctcccactccaccaagccggcacgtctcccctctcctcttctttttgggccagcgtggcaacctgggtcactaactcagtcaccctcctacccgagcttgtgacctgggccgcccactgtgctcttgccccagatccggtggaagctgcaatagacacgcgcttaccaaagtaccaactagggattggggcagtctctcaccaggccaccgccatgggcgagcctcctccagcctgctctaccagcgccaacaattcgtggagacacggtttagtgggcatcccgttgcaattggatacggcaactaaacaacaaagatatggatattatgctagggtgttggtggatgttgatctgttgggtgctcttcctacgtccattatggttgaaagagaacacctctgttttccagtaggtatcgagtacgaaaacctgcctcctcagtgctctcactgtggaattaatgttcaagaggctagcttctctgacgcacatgccattaacgatattgacggtaatgttgttactttgaatgcaatagagcaacctttggcaggtgatcaggttctccattctggtaatgatcaagtggcttcacctaaagagacttccattcaggctctcatccaaagtgatgttgttgtggctcttgtaaatactgttttggaggaagcaacgactgaggttatggaggaacaggctcaaagggtaatggaggagaataattctaaccttgcctctaatgatgcatatgttgcttcgaacacagatattagtgatttacctacccgtacttggggggatatttttgaggaggagagggttgaaggtttgatcagagaggctccagctagtgctccaccaagccttggtccacctcctggttttgtcaaatctaatgtggcttcagaaattgatgcggttgcaatatttgttaatggtgaggatattgatgggtttattccagttctcactaaatcacaaaagaagttggagaaaaagaaaaaaaaaacagctaacgcttctccagatcgtaaaaatccatacctatcaaggattactttggaaggcactcttactcaactatcttgtgtctacgcgtctacaactgcactcaaacgtcgcaagttatggtcggatttattacttcttcgtcaacagaccactattccatggatggcaataggagactttaatgcagtattgggggctcaagaggccatgaatggtagtatccctgtgtgttcatcttgtgaggatttttgcaatgccacagaacgatgtaatttcactcatcttgatacttctggggctttctttagatggtctaaagggcgaggtcggaagcacttagaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

489

Amino Acids

53.34

Weight (kDa)

5.39

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 656
Acc36I ACCTGC 3 cut(s) 28, 552, 656
AccB7I CCANNNNNTGG 2 cut(s) 980, 992
AccI GTMKAC 2 cut(s) 1206, 1214
AccII CGCG 2 cut(s) 271, 1211
AciI CCGC 5 cut(s) 36, 43, 222, 321, 1031
AclWI GGATC 1 cut(s) 239
AcuI CTGAAG 1 cut(s) 1002
AfaI GTAC 3 cut(s) 284, 536, 904
AfiI CCNNNNNNNGG 6 cut(s) 247, 665, 906, 907, 980, 992
AflIII ACRYGT 1 cut(s) 1209
AgsI TTSAA 4 cut(s) 500, 581, 643, 938
AjiI CACGTC 2 cut(s) 27, 135
AjnI CCWGG 4 cut(s) 173, 215, 312, 991
AloI GAACNNNNNNTCC 2 cut(s) 561, 593
AluBI AGCT 5 cut(s) 208, 257, 591, 962, 1127
AluI AGCT 5 cut(s) 208, 257, 591, 962, 1127
Alw21I GWGCWC 4 cut(s) 235, 478, 560, 970
Alw26I GTCTC 7 cut(s) 33, 116, 141, 310, 367, 710, 1293
AlwI GGATC 1 cut(s) 239
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 4 cut(s) 159, 219, 315, 1329
ApeKI GCWGC 1 cut(s) 257
AseI ATTAAT 1 cut(s) 573
AspLEI GCGC 2 cut(s) 273, 359
AspS9I GGNCC 3 cut(s) 159, 219, 983
AsuHPI GGTGA 5 cut(s) 184, 302, 680, 699, 1064
AsuII TTCGAA 1 cut(s) 872
AsuNHI GCTAGC 1 cut(s) 587
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 1 cut(s) 983
BaeI ACNNNNGTAYC 2 cut(s) 266, 299
BanII GRGCYC 1 cut(s) 1324
Bbv12I GWGCWC 4 cut(s) 235, 478, 560, 970
BbvI GCAGC 1 cut(s) 244
BccI CCATC 3 cut(s) 1058, 1282, 1428
BceAI ACGGC 1 cut(s) 426
BciT130I CCWGG 4 cut(s) 175, 217, 314, 993
BciVI GTATCC 2 cut(s) 400, 1355
BclI TGATCA 3 cut(s) 670, 694, 945
BcoDI GTCTC 7 cut(s) 33, 116, 141, 310, 367, 710, 1293
BfaI CTAG 4 cut(s) 290, 444, 588, 963
BfmI CTRYAG 1 cut(s) 76
BfoI RGCGCY 1 cut(s) 360
BfuAI ACCTGC 3 cut(s) 28, 552, 656
BfuI GTATCC 2 cut(s) 400, 1355
BglI GCCNNNNNGGC 1 cut(s) 167
BisI GCNGC 4 cut(s) 36, 43, 222, 258
BlsI GCNGC 4 cut(s) 37, 44, 223, 259
Bme1390I CCNGG 4 cut(s) 175, 217, 314, 993
Bme18I GGWCC 1 cut(s) 983
BmeT110I CYCGRG 1 cut(s) 203
BmgBI CACGTC 2 cut(s) 27, 135
BmgT120I GGNCC 3 cut(s) 159, 219, 983
BmiI GGNNCC 1 cut(s) 957
BmrFI CCNGG 4 cut(s) 175, 217, 314, 993
BmsI GCATC 3 cut(s) 399, 847, 1018
BmtI GCTAGC 1 cut(s) 591
BplI GAGNNNNNCTC 2 cut(s) 495, 527
BpmI CTGGAG 4 cut(s) 15, 324, 942, 1122
Bpu14I TTCGAA 1 cut(s) 872
BpuEI CTTGAG 1 cut(s) 1308
BsaAI YACGTR 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 462
BsaJI CCNNGG 5 cut(s) 174, 216, 324, 979, 1283
BsaWI WCCGGW 1 cut(s) 247
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 6 cut(s) 247, 665, 906, 907, 980, 992
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 3 cut(s) 65, 521, 1076
Bse3DI GCAATG 1 cut(s) 1384
Bse8I GATNNNNATC 1 cut(s) 462
BseBI CCWGG 4 cut(s) 175, 217, 314, 993
BseDI CCNNGG 5 cut(s) 174, 216, 324, 979, 1283
BseGI GGATG 4 cut(s) 390, 463, 735, 1293
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 6 cut(s) 247, 665, 906, 907, 980, 992
BseMI GCAATG 1 cut(s) 1384
BseMII CTCAG 3 cut(s) 201, 566, 783
BseNI ACTGG 3 cut(s) 65, 521, 1076
BseRI GAGGAG 6 cut(s) 136, 327, 540, 842, 938, 941
BseXI GCAGC 1 cut(s) 244
BsgI GTGCAG 1 cut(s) 1206
Bsh1236I CGCG 2 cut(s) 271, 1211
BshFI GGCC 4 cut(s) 161, 221, 317, 1331
BsiHKAI GWGCWC 4 cut(s) 235, 478, 560, 970
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 2 cut(s) 129, 248
BslI CCNNNNNNNGG 6 cut(s) 247, 665, 906, 907, 980, 992
BsmAI GTCTC 7 cut(s) 33, 116, 141, 310, 367, 710, 1293
BsmBI CGTCTC 2 cut(s) 33, 141
BsmI GAATGC 1 cut(s) 649
BsnI GGCC 4 cut(s) 161, 221, 317, 1331
BsoBI CYCGRG 1 cut(s) 203
Bsp119I TTCGAA 1 cut(s) 872
Bsp1286I GDGCHC 5 cut(s) 235, 478, 560, 970, 1324
Bsp143I GATC 6 cut(s) 244, 463, 670, 694, 945, 1141
Bsp19I CCATGG 2 cut(s) 324, 1283
BspACI CCGC 5 cut(s) 36, 43, 222, 321, 1031
BspANI GGCC 4 cut(s) 161, 221, 317, 1331
BspCNI CTCAG 3 cut(s) 200, 565, 784
BspFNI CGCG 2 cut(s) 271, 1211
BspLI GGNNCC 1 cut(s) 957
BspMAI CTGCAG 1 cut(s) 80
BspMI ACCTGC 3 cut(s) 28, 552, 656
BspOI GCTAGC 1 cut(s) 591
BspPI GGATC 1 cut(s) 239
BspQI GCTCTTC 1 cut(s) 483
BspT104I TTCGAA 1 cut(s) 872
BsrDI GCAATG 1 cut(s) 1384
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 3 cut(s) 65, 521, 1076
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 5 cut(s) 174, 216, 324, 979, 1283
BssMI GATC 6 cut(s) 244, 463, 670, 694, 945, 1141
BssT1I CCWWGG 3 cut(s) 324, 979, 1283
Bst2UI CCWGG 4 cut(s) 175, 217, 314, 993
Bst4CI ACNGT 6 cut(s) 110, 230, 380, 566, 626, 772
Bst6I CTCTTC 2 cut(s) 154, 483
BstAPI GCANNNNNTGC 1 cut(s) 866
BstBAI YACGTR 1 cut(s) 97
BstBI TTCGAA 1 cut(s) 872
BstC8I GCNNGC 7 cut(s) 40, 70, 130, 163, 332, 346, 589
BstDEI CTNAG 4 cut(s) 187, 552, 792, 1462
BstDSI CCRYGG 2 cut(s) 324, 1283
BstENI CCTNNNNNAGG 1 cut(s) 663
BstF5I GGATG 4 cut(s) 390, 463, 735, 1293
BstFNI CGCG 2 cut(s) 271, 1211
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 2 cut(s) 273, 359
BstKTI GATC 6 cut(s) 247, 466, 673, 697, 948, 1144
BstMAI GTCTC 7 cut(s) 33, 116, 141, 310, 367, 710, 1293
BstMBI GATC 6 cut(s) 244, 463, 670, 694, 945, 1141
BstMWI GCNNNNNNNGC 5 cut(s) 167, 230, 354, 866, 1328
BstNI CCWGG 4 cut(s) 175, 217, 314, 993
BstNSI RCATGY 1 cut(s) 608
BstSCI CCNGG 4 cut(s) 173, 215, 312, 991
BstSFI CTRYAG 1 cut(s) 76
BstUI CGCG 2 cut(s) 271, 1211
BstV1I GCAGC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 244
BstXI CCANNNNNNTGG 2 cut(s) 60, 325
BstYI RGATCY 1 cut(s) 244
BsuI GTATCC 2 cut(s) 400, 1355
BsuRI GGCC 4 cut(s) 161, 221, 317, 1331
BtgI CCRYGG 2 cut(s) 324, 1283
BtrI CACGTC 2 cut(s) 27, 135
BtsCI GGATG 4 cut(s) 390, 463, 735, 1293
BtsIMutI CAGTG 3 cut(s) 226, 560, 562
BveI ACCTGC 3 cut(s) 28, 552, 656
Cac8I GCNNGC 7 cut(s) 40, 70, 130, 163, 332, 346, 589
CfoI GCGC 2 cut(s) 273, 359
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 3 cut(s) 159, 219, 983
CseI GACGC 2 cut(s) 608, 1200
Csp6I GTAC 3 cut(s) 283, 535, 903
CviAII CATG 4 cut(s) 325, 605, 1284, 1333
CviQI GTAC 3 cut(s) 283, 535, 903
DdeI CTNAG 4 cut(s) 187, 552, 792, 1462
DpnI GATC 6 cut(s) 246, 465, 672, 696, 947, 1143
DpnII GATC 6 cut(s) 244, 463, 670, 694, 945, 1141
Eam1104I CTCTTC 2 cut(s) 154, 483
EarI CTCTTC 2 cut(s) 154, 483
Eco130I CCWWGG 3 cut(s) 324, 979, 1283
Eco24I GRGCYC 1 cut(s) 1324
Eco47I GGWCC 1 cut(s) 983
Eco57I CTGAAG 1 cut(s) 1002
Eco88I CYCGRG 1 cut(s) 203
EcoNI CCTNNNNNAGG 1 cut(s) 663
EcoRII CCWGG 4 cut(s) 173, 215, 312, 991
EcoT14I CCWWGG 3 cut(s) 324, 979, 1283
EcoT22I ATGCAT 1 cut(s) 862
EcoT38I GRGCYC 1 cut(s) 1324
ErhI CCWWGG 3 cut(s) 324, 979, 1283
Esp3I CGTCTC 2 cut(s) 33, 141
FaeI CATG 4 cut(s) 328, 608, 1287, 1336
FalI AAGNNNNNCTT 4 cut(s) 1156, 1188, 1170, 1202
FatI CATG 4 cut(s) 324, 604, 1283, 1332
FauNDI CATATG 1 cut(s) 862
FbaI TGATCA 3 cut(s) 670, 694, 945
FblI GTMKAC 2 cut(s) 1206, 1214
Fnu4HI GCNGC 4 cut(s) 36, 43, 222, 258
FokI GGATG 4 cut(s) 377, 470, 722, 1300
FriOI GRGCYC 1 cut(s) 1324
Fsp4HI GCNGC 4 cut(s) 36, 43, 222, 258
FspBI CTAG 4 cut(s) 290, 444, 588, 963
GlaI GCGC 2 cut(s) 272, 358
GluI GCNGC 4 cut(s) 36, 43, 222, 258
GsuI CTGGAG 4 cut(s) 15, 324, 942, 1122
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 4 cut(s) 161, 221, 317, 1331
HapII CCGG 2 cut(s) 129, 248
HgaI GACGC 2 cut(s) 608, 1200
HhaI GCGC 2 cut(s) 273, 359
Hin1II CATG 4 cut(s) 328, 608, 1287, 1336
Hin6I GCGC 2 cut(s) 271, 357
HinP1I GCGC 2 cut(s) 271, 357
HincII GTYRAC 1 cut(s) 1268
HindII GTYRAC 1 cut(s) 1268
HpaII CCGG 2 cut(s) 129, 248
HphI GGTGA 5 cut(s) 184, 302, 680, 699, 1064
Hpy166II GTNNAC 4 cut(s) 986, 1207, 1215, 1268
Hpy188I TCNGA 5 cut(s) 598, 950, 1021, 1249, 1455
Hpy188III TCNNGA 4 cut(s) 581, 1139, 1325, 1409
Hpy8I GTNNAC 4 cut(s) 986, 1207, 1215, 1268
Hpy99I CGWCG 1 cut(s) 1236
HpyAV CCTTC 2 cut(s) 932, 1172
HpyCH4III ACNGT 6 cut(s) 110, 230, 380, 566, 626, 772
HpyCH4IV ACGT 5 cut(s) 26, 96, 134, 485, 1231
HpyF10VI GCNNNNNNNGC 5 cut(s) 167, 230, 354, 866, 1328
HpyF3I CTNAG 4 cut(s) 187, 552, 792, 1462
HpySE526I ACGT 5 cut(s) 26, 96, 134, 485, 1231
Hsp92II CATG 4 cut(s) 328, 608, 1287, 1336
HspAI GCGC 2 cut(s) 271, 357
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
Ksp22I TGATCA 3 cut(s) 670, 694, 945
Kzo9I GATC 6 cut(s) 244, 463, 670, 694, 945, 1141
LguI GCTCTTC 1 cut(s) 483
LmnI GCTCC 3 cut(s) 77, 961, 973
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 3 cut(s) 399, 847, 1018
MaeI CTAG 4 cut(s) 290, 444, 588, 963
MaeII ACGT 5 cut(s) 26, 96, 134, 485, 1231
MaeIII GTNAC 5 cut(s) 97, 178, 190, 211, 634
MalI GATC 6 cut(s) 246, 465, 672, 696, 947, 1143
MboI GATC 6 cut(s) 244, 463, 670, 694, 945, 1141
MboII GAAGA 3 cut(s) 141, 470, 1253
MfeI CAATTG 1 cut(s) 401
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 5 cut(s) 235, 478, 560, 970, 1324
MluCI AATT 6 cut(s) 364, 401, 570, 835, 1023, 1396
MluI ACGCGT 1 cut(s) 1209
MmeI TCCRAC 3 cut(s) 1083, 1227, 1433
Mph1103I ATGCAT 1 cut(s) 862
MroNI GCCGGC 1 cut(s) 128
MseI TTAA 4 cut(s) 573, 612, 1047, 1305
MslI CAYNNNNRTG 1 cut(s) 323
MspI CCGG 2 cut(s) 129, 248
MspR9I CCNGG 4 cut(s) 175, 217, 314, 993
MunI CAATTG 1 cut(s) 401
Mva1269I GAATGC 1 cut(s) 649
MvaI CCWGG 4 cut(s) 175, 217, 314, 993
MvnI CGCG 2 cut(s) 271, 1211
MwoI GCNNNNNNNGC 5 cut(s) 167, 230, 354, 866, 1328
NaeI GCCGGC 1 cut(s) 130
NcoI CCATGG 2 cut(s) 324, 1283
NdeI CATATG 1 cut(s) 862
NdeII GATC 6 cut(s) 244, 463, 670, 694, 945, 1141
NgoMIV GCCGGC 1 cut(s) 128
NheI GCTAGC 1 cut(s) 587
NlaIII CATG 4 cut(s) 328, 608, 1287, 1336
NlaIV GGNNCC 1 cut(s) 957
NmuCI GTSAC 4 cut(s) 97, 178, 190, 211
NsiI ATGCAT 1 cut(s) 862
NspI RCATGY 1 cut(s) 608
NspV TTCGAA 1 cut(s) 872
PaqCI CACCTGC 1 cut(s) 656
PciSI GCTCTTC 1 cut(s) 483
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PctI GAATGC 1 cut(s) 649
PdiI GCCGGC 1 cut(s) 130
PflMI CCANNNNNTGG 2 cut(s) 980, 992
PkrI GCNGC 4 cut(s) 37, 44, 223, 259
Ppu21I YACGTR 1 cut(s) 97
PshBI ATTAAT 1 cut(s) 573
Psp6I CCWGG 4 cut(s) 173, 215, 312, 991
PspGI CCWGG 4 cut(s) 173, 215, 312, 991
PspN4I GGNNCC 1 cut(s) 957
PspPI GGNCC 3 cut(s) 159, 219, 983
PstI CTGCAG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 3 cut(s) 284, 536, 904
RsaNI GTAC 3 cut(s) 283, 535, 903
RseI CAYNNNNRTG 1 cut(s) 323
SapI GCTCTTC 1 cut(s) 483
SaqAI TTAA 4 cut(s) 573, 612, 1047, 1305
SatI GCNGC 4 cut(s) 36, 43, 222, 258
Sau3AI GATC 6 cut(s) 244, 463, 670, 694, 945, 1141
Sau96I GGNCC 3 cut(s) 159, 219, 983
SbfI CCTGCAGG 1 cut(s) 80
ScrFI CCNGG 4 cut(s) 175, 217, 314, 993
SdaI CCTGCAGG 1 cut(s) 80
SduI GDGCHC 5 cut(s) 235, 478, 560, 970, 1324
SfaNI GCATC 3 cut(s) 399, 847, 1018
SfcI CTRYAG 1 cut(s) 76
SfuI TTCGAA 1 cut(s) 872
SinI GGWCC 1 cut(s) 983
SmiMI CAYNNNNRTG 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 1323
SmoI CTYRAG 1 cut(s) 1323
Sse8387I CCTGCAGG 1 cut(s) 80
Sse9I AATT 6 cut(s) 364, 401, 570, 835, 1023, 1396
SsiI CCGC 5 cut(s) 36, 43, 222, 321, 1031
SspI AATATT 1 cut(s) 1041
SspMI CTAG 4 cut(s) 290, 444, 588, 963
StyD4I CCNGG 4 cut(s) 173, 215, 312, 991
StyI CCWWGG 3 cut(s) 324, 979, 1283
TaaI ACNGT 6 cut(s) 110, 230, 380, 566, 626, 772
TaiI ACGT 5 cut(s) 29, 99, 137, 488, 1234
TaqI TCGA 2 cut(s) 531, 872
TasI AATT 6 cut(s) 364, 401, 570, 835, 1023, 1396
TauI GCSGC 3 cut(s) 38, 45, 224
Tru1I TTAA 4 cut(s) 573, 612, 1047, 1305
Tru9I TTAA 4 cut(s) 573, 612, 1047, 1305
TscAI CASTG 3 cut(s) 233, 560, 569
TseFI GTSAC 4 cut(s) 97, 178, 190, 211
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 4 cut(s) 97, 178, 190, 211
TspDTI ATGAA 2 cut(s) 1347, 1349
TspRI CASTG 3 cut(s) 233, 560, 569
Van91I CCANNNNNTGG 2 cut(s) 980, 992
VpaK11BI GGWCC 1 cut(s) 983
VspI ATTAAT 1 cut(s) 573
XagI CCTNNNNNAGG 1 cut(s) 663
XceI RCATGY 1 cut(s) 608
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XmiI GTMKAC 2 cut(s) 1206, 1214
XspI CTAG 4 cut(s) 290, 444, 588, 963
Zsp2I ATGCAT 1 cut(s) 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.