ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TRAPP | PF04051 | 7 - 50 | 1.2e-10 | Transport protein particle (TRAPP) component |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 92, 219 |
| AccB1I | GGYRCC | 2 cut(s) | 92, 219 |
| AciI | CCGC | 2 cut(s) | 153, 301 |
| AclWI | GGATC | 1 cut(s) | 140 |
| AcoI | YGGCCR | 1 cut(s) | 150 |
| AfaI | GTAC | 2 cut(s) | 94, 221 |
| AgsI | TTSAA | 2 cut(s) | 55, 76 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 169, 201 |
| Alw26I | GTCTC | 3 cut(s) | 144, 159, 337 |
| AlwI | GGATC | 1 cut(s) | 140 |
| AoxI | GGCC | 2 cut(s) | 150, 263 |
| ApeKI | GCWGC | 1 cut(s) | 211 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 184 |
| Asp718I | GGTACC | 2 cut(s) | 92, 219 |
| AspLEI | GCGC | 1 cut(s) | 292 |
| AspS9I | GGNCC | 1 cut(s) | 263 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 84, 117 |
| BanI | GGYRCC | 2 cut(s) | 92, 219 |
| BbsI | GAAGAC | 1 cut(s) | 83 |
| BbvI | GCAGC | 1 cut(s) | 223 |
| BccI | CCATC | 1 cut(s) | 320 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 95, 129 |
| BcoDI | GTCTC | 3 cut(s) | 144, 159, 337 |
| BfmI | CTRYAG | 1 cut(s) | 348 |
| BisI | GCNGC | 2 cut(s) | 153, 212 |
| BlsI | GCNGC | 2 cut(s) | 154, 213 |
| BmgT120I | GGNCC | 1 cut(s) | 263 |
| BmiI | GGNNCC | 3 cut(s) | 94, 221, 264 |
| BmrI | ACTGGG | 1 cut(s) | 34 |
| BmsI | GCATC | 1 cut(s) | 240 |
| BmuI | ACTGGG | 1 cut(s) | 34 |
| BpiI | GAAGAC | 1 cut(s) | 83 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 319, 351 |
| BsaJI | CCNNGG | 1 cut(s) | 194 |
| Bse1I | ACTGG | 1 cut(s) | 40 |
| BseDI | CCNNGG | 1 cut(s) | 194 |
| BseGI | GGATG | 1 cut(s) | 307 |
| BseMII | CTCAG | 1 cut(s) | 180 |
| BseNI | ACTGG | 1 cut(s) | 40 |
| BseX3I | CGGCCG | 1 cut(s) | 150 |
| BseXI | GCAGC | 1 cut(s) | 223 |
| Bsh1285I | CGRYCG | 1 cut(s) | 153 |
| BshFI | GGCC | 2 cut(s) | 152, 265 |
| BshNI | GGYRCC | 2 cut(s) | 92, 219 |
| BsiEI | CGRYCG | 1 cut(s) | 153 |
| BsiSI | CCGG | 1 cut(s) | 149 |
| BsmAI | GTCTC | 3 cut(s) | 144, 159, 337 |
| BsmBI | CGTCTC | 1 cut(s) | 159 |
| BsnI | GGCC | 2 cut(s) | 152, 265 |
| Bsp143I | GATC | 2 cut(s) | 16, 145 |
| BspACI | CCGC | 2 cut(s) | 153, 301 |
| BspANI | GGCC | 2 cut(s) | 152, 265 |
| BspCNI | CTCAG | 1 cut(s) | 181 |
| BspLI | GGNNCC | 3 cut(s) | 94, 221, 264 |
| BspPI | GGATC | 1 cut(s) | 140 |
| BspT107I | GGYRCC | 2 cut(s) | 92, 219 |
| BsrI | ACTGG | 1 cut(s) | 40 |
| BssECI | CCNNGG | 1 cut(s) | 194 |
| BssMI | GATC | 2 cut(s) | 16, 145 |
| BstC8I | GCNNGC | 1 cut(s) | 288 |
| BstDEI | CTNAG | 1 cut(s) | 189 |
| BstF5I | GGATG | 1 cut(s) | 307 |
| BstHHI | GCGC | 1 cut(s) | 292 |
| BstKTI | GATC | 2 cut(s) | 19, 148 |
| BstMAI | GTCTC | 3 cut(s) | 144, 159, 337 |
| BstMBI | GATC | 2 cut(s) | 16, 145 |
| BstMCI | CGRYCG | 1 cut(s) | 153 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 298 |
| BstNSI | RCATGY | 3 cut(s) | 139, 231, 326 |
| BstSFI | CTRYAG | 1 cut(s) | 348 |
| BstV1I | GCAGC | 1 cut(s) | 223 |
| BstV2I | GAAGAC | 1 cut(s) | 83 |
| BstZI | CGGCCG | 1 cut(s) | 150 |
| BsuRI | GGCC | 2 cut(s) | 152, 265 |
| BtsCI | GGATG | 1 cut(s) | 307 |
| Cac8I | GCNNGC | 1 cut(s) | 288 |
| CfoI | GCGC | 1 cut(s) | 292 |
| Cfr13I | GGNCC | 1 cut(s) | 263 |
| Csp6I | GTAC | 2 cut(s) | 93, 220 |
| CviAII | CATG | 4 cut(s) | 132, 136, 228, 323 |
| CviJI | RGCY | 5 cut(s) | 127, 152, 193, 199, 265 |
| CviKI_1 | RGCY | 5 cut(s) | 127, 152, 193, 199, 265 |
| CviQI | GTAC | 2 cut(s) | 93, 220 |
| DdeI | CTNAG | 1 cut(s) | 189 |
| DpnI | GATC | 2 cut(s) | 18, 147 |
| DpnII | GATC | 2 cut(s) | 16, 145 |
| EaeI | YGGCCR | 1 cut(s) | 150 |
| EagI | CGGCCG | 1 cut(s) | 150 |
| EclXI | CGGCCG | 1 cut(s) | 150 |
| Eco52I | CGGCCG | 1 cut(s) | 150 |
| EcoO109I | RGGNCCY | 1 cut(s) | 263 |
| EcoT22I | ATGCAT | 2 cut(s) | 137, 233 |
| Esp3I | CGTCTC | 1 cut(s) | 159 |
| FaeI | CATG | 4 cut(s) | 135, 139, 231, 326 |
| FaiI | YATR | 6 cut(s) | 87, 133, 137, 229, 272, 324 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 80, 112 |
| FatI | CATG | 4 cut(s) | 131, 135, 227, 322 |
| Fnu4HI | GCNGC | 2 cut(s) | 153, 212 |
| FokI | GGATG | 1 cut(s) | 294 |
| Fsp4HI | GCNGC | 2 cut(s) | 153, 212 |
| GlaI | GCGC | 1 cut(s) | 291 |
| GluI | GCNGC | 2 cut(s) | 153, 212 |
| HaeIII | GGCC | 2 cut(s) | 152, 265 |
| HapII | CCGG | 1 cut(s) | 149 |
| HhaI | GCGC | 1 cut(s) | 292 |
| Hin1II | CATG | 4 cut(s) | 135, 139, 231, 326 |
| Hin6I | GCGC | 1 cut(s) | 290 |
| HinP1I | GCGC | 1 cut(s) | 290 |
| HinfI | GANTC | 1 cut(s) | 35 |
| HpaII | CCGG | 1 cut(s) | 149 |
| Hpy188I | TCNGA | 3 cut(s) | 14, 46, 190 |
| Hpy188III | TCNNGA | 2 cut(s) | 55, 143 |
| HpyCH4IV | ACGT | 1 cut(s) | 168 |
| HpyCH4V | TGCA | 5 cut(s) | 30, 106, 135, 231, 322 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 298 |
| HpyF3I | CTNAG | 1 cut(s) | 189 |
| HpySE526I | ACGT | 1 cut(s) | 168 |
| Hsp92II | CATG | 4 cut(s) | 135, 139, 231, 326 |
| HspAI | GCGC | 1 cut(s) | 290 |
| KpnI | GGTACC | 2 cut(s) | 96, 223 |
| Kzo9I | GATC | 2 cut(s) | 16, 145 |
| LpnPI | CCDG | 4 cut(s) | 53, 162, 202, 332 |
| Lsp1109I | GCAGC | 1 cut(s) | 223 |
| LweI | GCATC | 1 cut(s) | 240 |
| MaeII | ACGT | 1 cut(s) | 168 |
| MalI | GATC | 2 cut(s) | 18, 147 |
| MboI | GATC | 2 cut(s) | 16, 145 |
| MboII | GAAGA | 1 cut(s) | 88 |
| MnlI | CCTC | 1 cut(s) | 204 |
| Mph1103I | ATGCAT | 2 cut(s) | 137, 233 |
| MroXI | GAANNNNTTC | 1 cut(s) | 184 |
| MseI | TTAA | 1 cut(s) | 257 |
| MslI | CAYNNNNRTG | 1 cut(s) | 327 |
| MspA1I | CMGCKG | 1 cut(s) | 155 |
| MspI | CCGG | 1 cut(s) | 149 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 298 |
| NdeII | GATC | 2 cut(s) | 16, 145 |
| NlaIII | CATG | 4 cut(s) | 135, 139, 231, 326 |
| NlaIV | GGNNCC | 3 cut(s) | 94, 221, 264 |
| NmeAIII | GCCGAG | 1 cut(s) | 175 |
| NsiI | ATGCAT | 2 cut(s) | 137, 233 |
| NspI | RCATGY | 3 cut(s) | 139, 231, 326 |
| PdmI | GAANNNNTTC | 1 cut(s) | 184 |
| PfeI | GAWTC | 1 cut(s) | 35 |
| PkrI | GCNGC | 2 cut(s) | 154, 213 |
| PspN4I | GGNNCC | 3 cut(s) | 94, 221, 264 |
| PspPI | GGNCC | 1 cut(s) | 263 |
| RsaI | GTAC | 2 cut(s) | 94, 221 |
| RsaNI | GTAC | 2 cut(s) | 93, 220 |
| RseI | CAYNNNNRTG | 1 cut(s) | 327 |
| SaqAI | TTAA | 1 cut(s) | 257 |
| SatI | GCNGC | 2 cut(s) | 153, 212 |
| Sau3AI | GATC | 2 cut(s) | 16, 145 |
| Sau96I | GGNCC | 1 cut(s) | 263 |
| SetI | ASST | 3 cut(s) | 98, 171, 221 |
| SfaNI | GCATC | 1 cut(s) | 240 |
| SfcI | CTRYAG | 1 cut(s) | 348 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 327 |
| SsiI | CCGC | 2 cut(s) | 153, 301 |
| SspI | AATATT | 1 cut(s) | 185 |
| TaiI | ACGT | 1 cut(s) | 171 |
| TauI | GCSGC | 1 cut(s) | 155 |
| TfiI | GAWTC | 1 cut(s) | 35 |
| Tru1I | TTAA | 1 cut(s) | 257 |
| Tru9I | TTAA | 1 cut(s) | 257 |
| TseI | GCWGC | 1 cut(s) | 211 |
| TspDTI | ATGAA | 3 cut(s) | 13, 120, 259 |
| XceI | RCATGY | 3 cut(s) | 139, 231, 326 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 244 |
| XmnI | GAANNNNTTC | 1 cut(s) | 184 |
| Zsp2I | ATGCAT | 2 cut(s) | 137, 233 |