ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 159 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 514 |
| AciI | CCGC | 1 cut(s) | 246 |
| AclI | AACGTT | 1 cut(s) | 406 |
| AclWI | GGATC | 1 cut(s) | 405 |
| AcsI | RAATTY | 2 cut(s) | 313, 475 |
| AcuI | CTGAAG | 2 cut(s) | 66, 265 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 514 |
| AflIII | ACRYGT | 1 cut(s) | 127 |
| AgsI | TTSAA | 3 cut(s) | 65, 252, 353 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 465, 497 |
| AluBI | AGCT | 4 cut(s) | 11, 136, 569, 605 |
| AluI | AGCT | 4 cut(s) | 11, 136, 569, 605 |
| Alw21I | GWGCWC | 2 cut(s) | 119, 607 |
| Alw26I | GTCTC | 1 cut(s) | 50 |
| AlwI | GGATC | 1 cut(s) | 405 |
| Ama87I | CYCGRG | 1 cut(s) | 210 |
| AoxI | GGCC | 2 cut(s) | 28, 182 |
| ApeKI | GCWGC | 3 cut(s) | 304, 503, 545 |
| ApoI | RAATTY | 2 cut(s) | 313, 475 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 60 |
| AspS9I | GGNCC | 1 cut(s) | 29 |
| AsuC2I | CCSGG | 2 cut(s) | 211, 212 |
| AvaI | CYCGRG | 1 cut(s) | 210 |
| BanII | GRGCYC | 1 cut(s) | 607 |
| BauI | CACGAG | 1 cut(s) | 120 |
| BbsI | GAAGAC | 2 cut(s) | 427, 546 |
| Bbv12I | GWGCWC | 2 cut(s) | 119, 607 |
| BbvI | GCAGC | 3 cut(s) | 316, 490, 557 |
| BccI | CCATC | 2 cut(s) | 40, 456 |
| BclI | TGATCA | 2 cut(s) | 223, 520 |
| BcnI | CCSGG | 2 cut(s) | 211, 212 |
| BcoDI | GTCTC | 1 cut(s) | 50 |
| BisI | GCNGC | 3 cut(s) | 305, 504, 546 |
| BlsI | GCNGC | 3 cut(s) | 306, 505, 547 |
| Bme1390I | CCNGG | 2 cut(s) | 211, 212 |
| BmeT110I | CYCGRG | 1 cut(s) | 210 |
| BmgT120I | GGNCC | 1 cut(s) | 29 |
| BmrFI | CCNGG | 2 cut(s) | 211, 212 |
| BmsI | GCATC | 2 cut(s) | 316, 567 |
| BpiI | GAAGAC | 2 cut(s) | 427, 546 |
| Bpu10I | CCTNAGC | 1 cut(s) | 606 |
| BpuMI | CCSGG | 2 cut(s) | 211, 212 |
| BsaJI | CCNNGG | 3 cut(s) | 209, 210, 508 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 106, 136 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 514 |
| Bse3DI | GCAATG | 1 cut(s) | 198 |
| BseDI | CCNNGG | 3 cut(s) | 209, 210, 508 |
| BseGI | GGATG | 3 cut(s) | 307, 541, 582 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 514 |
| BseMI | GCAATG | 1 cut(s) | 198 |
| BseMII | CTCAG | 1 cut(s) | 586 |
| BseXI | GCAGC | 3 cut(s) | 316, 490, 557 |
| BshFI | GGCC | 2 cut(s) | 30, 184 |
| BsiHKAI | GWGCWC | 2 cut(s) | 119, 607 |
| BsiHKCI | CYCGRG | 1 cut(s) | 210 |
| BsiSI | CCGG | 1 cut(s) | 211 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 514 |
| BsmAI | GTCTC | 1 cut(s) | 50 |
| BsmBI | CGTCTC | 1 cut(s) | 50 |
| BsmI | GAATGC | 1 cut(s) | 343 |
| BsnI | GGCC | 2 cut(s) | 30, 184 |
| BsoBI | CYCGRG | 1 cut(s) | 210 |
| Bsp1286I | GDGCHC | 2 cut(s) | 119, 607 |
| Bsp143I | GATC | 3 cut(s) | 223, 397, 520 |
| Bsp19I | CCATGG | 1 cut(s) | 508 |
| BspACI | CCGC | 1 cut(s) | 246 |
| BspANI | GGCC | 2 cut(s) | 30, 184 |
| BspCNI | CTCAG | 1 cut(s) | 585 |
| BspPI | GGATC | 1 cut(s) | 405 |
| BspQI | GCTCTTC | 1 cut(s) | 210 |
| BsrDI | GCAATG | 1 cut(s) | 198 |
| BssECI | CCNNGG | 3 cut(s) | 209, 210, 508 |
| BssMI | GATC | 3 cut(s) | 223, 397, 520 |
| BssSI | CACGAG | 1 cut(s) | 120 |
| BssT1I | CCWWGG | 1 cut(s) | 508 |
| Bst2BI | CACGAG | 1 cut(s) | 120 |
| Bst6I | CTCTTC | 1 cut(s) | 210 |
| BstC8I | GCNNGC | 1 cut(s) | 341 |
| BstDEI | CTNAG | 3 cut(s) | 273, 572, 606 |
| BstDSI | CCRYGG | 1 cut(s) | 508 |
| BstF5I | GGATG | 3 cut(s) | 307, 541, 582 |
| BstKTI | GATC | 3 cut(s) | 226, 400, 523 |
| BstMAI | GTCTC | 1 cut(s) | 50 |
| BstMBI | GATC | 3 cut(s) | 223, 397, 520 |
| BstNSI | RCATGY | 1 cut(s) | 131 |
| BstSCI | CCNGG | 2 cut(s) | 209, 210 |
| BstV1I | GCAGC | 3 cut(s) | 316, 490, 557 |
| BstV2I | GAAGAC | 2 cut(s) | 427, 546 |
| BstX2I | RGATCY | 1 cut(s) | 397 |
| BstYI | RGATCY | 1 cut(s) | 397 |
| BsuRI | GGCC | 2 cut(s) | 30, 184 |
| BtgI | CCRYGG | 1 cut(s) | 508 |
| BtsCI | GGATG | 3 cut(s) | 307, 541, 582 |
| Cac8I | GCNNGC | 1 cut(s) | 341 |
| Cfr13I | GGNCC | 1 cut(s) | 29 |
| Cfr9I | CCCGGG | 1 cut(s) | 210 |
| CviAII | CATG | 3 cut(s) | 128, 509, 514 |
| DdeI | CTNAG | 3 cut(s) | 273, 572, 606 |
| DpnI | GATC | 3 cut(s) | 225, 399, 522 |
| DpnII | GATC | 3 cut(s) | 223, 397, 520 |
| Eam1104I | CTCTTC | 1 cut(s) | 210 |
| EarI | CTCTTC | 1 cut(s) | 210 |
| Ecl136II | GAGCTC | 1 cut(s) | 605 |
| Eco130I | CCWWGG | 1 cut(s) | 508 |
| Eco24I | GRGCYC | 1 cut(s) | 607 |
| Eco53kI | GAGCTC | 1 cut(s) | 605 |
| Eco57I | CTGAAG | 2 cut(s) | 66, 265 |
| Eco88I | CYCGRG | 1 cut(s) | 210 |
| EcoICRI | GAGCTC | 1 cut(s) | 605 |
| EcoT14I | CCWWGG | 1 cut(s) | 508 |
| EcoT38I | GRGCYC | 1 cut(s) | 607 |
| ErhI | CCWWGG | 1 cut(s) | 508 |
| Esp3I | CGTCTC | 1 cut(s) | 50 |
| FaeI | CATG | 3 cut(s) | 131, 512, 517 |
| FaiI | YATR | 8 cut(s) | 15, 71, 129, 159, 222, 296, 510, 515 |
| FatI | CATG | 3 cut(s) | 127, 508, 513 |
| FbaI | TGATCA | 2 cut(s) | 223, 520 |
| Fnu4HI | GCNGC | 3 cut(s) | 305, 504, 546 |
| FokI | GGATG | 3 cut(s) | 294, 548, 589 |
| FriOI | GRGCYC | 1 cut(s) | 607 |
| Fsp4HI | GCNGC | 3 cut(s) | 305, 504, 546 |
| GluI | GCNGC | 3 cut(s) | 305, 504, 546 |
| HaeIII | GGCC | 2 cut(s) | 30, 184 |
| HapII | CCGG | 1 cut(s) | 211 |
| Hin1II | CATG | 3 cut(s) | 131, 512, 517 |
| HinfI | GANTC | 1 cut(s) | 461 |
| HpaII | CCGG | 1 cut(s) | 211 |
| Hpy166II | GTNNAC | 1 cut(s) | 125 |
| Hpy188I | TCNGA | 2 cut(s) | 76, 402 |
| Hpy188III | TCNNGA | 2 cut(s) | 24, 574 |
| Hpy8I | GTNNAC | 1 cut(s) | 125 |
| HpyAV | CCTTC | 2 cut(s) | 48, 289 |
| HpyCH4IV | ACGT | 1 cut(s) | 406 |
| HpyCH4V | TGCA | 5 cut(s) | 304, 323, 385, 545, 580 |
| HpyF3I | CTNAG | 3 cut(s) | 273, 572, 606 |
| HpySE526I | ACGT | 1 cut(s) | 406 |
| Hsp92II | CATG | 3 cut(s) | 131, 512, 517 |
| Ksp22I | TGATCA | 2 cut(s) | 223, 520 |
| Kzo9I | GATC | 3 cut(s) | 223, 397, 520 |
| LguI | GCTCTTC | 1 cut(s) | 210 |
| LmnI | GCTCC | 2 cut(s) | 8, 114 |
| LpnPI | CCDG | 6 cut(s) | 69, 224, 268, 325, 559, 593 |
| Lsp1109I | GCAGC | 3 cut(s) | 316, 490, 557 |
| LweI | GCATC | 2 cut(s) | 316, 567 |
| MaeII | ACGT | 1 cut(s) | 406 |
| MalI | GATC | 3 cut(s) | 225, 399, 522 |
| MboI | GATC | 3 cut(s) | 223, 397, 520 |
| MboII | GAAGA | 4 cut(s) | 68, 197, 427, 546 |
| MflI | RGATCY | 1 cut(s) | 397 |
| MhlI | GDGCHC | 2 cut(s) | 119, 607 |
| MluCI | AATT | 5 cut(s) | 313, 334, 353, 389, 475 |
| MmeI | TCCRAC | 1 cut(s) | 92 |
| MnlI | CCTC | 3 cut(s) | 20, 169, 526 |
| MroXI | GAANNNNTTC | 1 cut(s) | 60 |
| MseI | TTAA | 3 cut(s) | 392, 489, 612 |
| MspI | CCGG | 1 cut(s) | 211 |
| MspR9I | CCNGG | 2 cut(s) | 211, 212 |
| Mva1269I | GAATGC | 1 cut(s) | 343 |
| NciI | CCSGG | 2 cut(s) | 211, 212 |
| NcoI | CCATGG | 1 cut(s) | 508 |
| NdeII | GATC | 3 cut(s) | 223, 397, 520 |
| NlaIII | CATG | 3 cut(s) | 131, 512, 517 |
| NspI | RCATGY | 1 cut(s) | 131 |
| PciI | ACATGT | 1 cut(s) | 127 |
| PciSI | GCTCTTC | 1 cut(s) | 210 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 412 |
| PctI | GAATGC | 1 cut(s) | 343 |
| PdmI | GAANNNNTTC | 1 cut(s) | 60 |
| PfeI | GAWTC | 1 cut(s) | 461 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 514 |
| PkrI | GCNGC | 3 cut(s) | 306, 505, 547 |
| PscI | ACATGT | 1 cut(s) | 127 |
| PsiI | TTATAA | 1 cut(s) | 159 |
| Psp124BI | GAGCTC | 1 cut(s) | 607 |
| Psp1406I | AACGTT | 1 cut(s) | 406 |
| PspPI | GGNCC | 1 cut(s) | 29 |
| PsuI | RGATCY | 1 cut(s) | 397 |
| SacI | GAGCTC | 1 cut(s) | 607 |
| SapI | GCTCTTC | 1 cut(s) | 210 |
| SaqAI | TTAA | 3 cut(s) | 392, 489, 612 |
| SatI | GCNGC | 3 cut(s) | 305, 504, 546 |
| Sau3AI | GATC | 3 cut(s) | 223, 397, 520 |
| Sau96I | GGNCC | 1 cut(s) | 29 |
| ScrFI | CCNGG | 2 cut(s) | 211, 212 |
| SduI | GDGCHC | 2 cut(s) | 119, 607 |
| SetI | ASST | 9 cut(s) | 13, 88, 138, 287, 409, 530, 571, 607, 612 |
| SfaNI | GCATC | 2 cut(s) | 316, 567 |
| SmaI | CCCGGG | 1 cut(s) | 212 |
| Sse9I | AATT | 5 cut(s) | 313, 334, 353, 389, 475 |
| SsiI | CCGC | 1 cut(s) | 246 |
| SstI | GAGCTC | 1 cut(s) | 607 |
| StyD4I | CCNGG | 2 cut(s) | 209, 210 |
| StyI | CCWWGG | 1 cut(s) | 508 |
| TaiI | ACGT | 1 cut(s) | 409 |
| TaqI | TCGA | 1 cut(s) | 104 |
| TasI | AATT | 5 cut(s) | 313, 334, 353, 389, 475 |
| TfiI | GAWTC | 1 cut(s) | 461 |
| Tru1I | TTAA | 3 cut(s) | 392, 489, 612 |
| Tru9I | TTAA | 3 cut(s) | 392, 489, 612 |
| TseI | GCWGC | 3 cut(s) | 304, 503, 545 |
| TspGWI | ACGGA | 1 cut(s) | 222 |
| TspMI | CCCGGG | 1 cut(s) | 210 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 514 |
| XapI | RAATTY | 2 cut(s) | 313, 475 |
| XceI | RCATGY | 1 cut(s) | 131 |
| XmaI | CCCGGG | 1 cut(s) | 210 |
| XmnI | GAANNNNTTC | 1 cut(s) | 60 |