Rh4CG040600

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
8234062 .. 8245241
11180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG040600.1

Sequence Viewer

Length: 1710 bp
ATGGAAGCTAGAGGATTCCATTGGTATTGGTTCTACCTCTTATCCTCTTCTCACCTTGTTCAAATTGCTGAAAGTCAAACCATATCAGAAGATTCTAGCAGAGATGCAATGGGACTGGGGAAGACTCTTATGACAGTTGCTCTAATACTTGCAAGACCAAGGAGAGGAAGCTCTGATAGTATTGAAATTACAAAGAACAAGTTAGATCCAGACACAATGACAACATTAAAGCCAAAGGGAGGCACTCTTGTTGTCTGTCCAAAGTTAAGCAAGTGGAAGGGTGCGCTTAAAACCCATTCAGAGTCTAATAGTATTTCCACTTTTGTCCATGTTGGGATGAGAAGCATCAGCCGCGTGGTGATTTCAGAAAAAGATGTGGTCTTGACTGACTATGATTTTCTGATTGACGATTATTATACGTATGGCGAGAACAGTGTTTTACACCAGGTTGACTGGTATAGGGTGGTGCTCGATGAAGCTCATACTCTTGGATCTTCAAGGGCAAAAGAAGGAGAGGGTCCTTCTTTCTCTAAAGGTCCCCAAGTGGTATTGGGGAATGGCACTGAAGGAGTTTTTGGTCCTGTTGATCATGGAATCATTGAGGAAAATGGAGTGATTATTGGGGCTGACCACCAACCGGGTCAGGTGAACAATGTGGTGCAACAAATTGTGGGGAGGAGTGTGCATGACAGTGAGCAACAACTTATTATTGTACCTCAGGAAGCAAACGAAGATGTTGCGCAAACAAATGGGGTTGAACAATTGGAAGAAGATGGGATTCACAGTGGCAACGATGATGCTGGTGGCTGTGACAGAAATGTCAATGAGGGTTCTACTCAAGAGGGTGTTCCTCAGCCTCGGGCTGAAGTGACCACAATATCCATGGAAAATTGGCCCATACTCATTCTTCCTCCTGACATTGAAACCATTGAGTGTCATCAGTCTGAAGCTGAACAAGAGTTCTATAATGCCCTTCTTAAGAGATCAAAAGTTCCGTTTGACCAGTTTGTGGCACAAGGAAAGGTTCTTCACAACTATGCACATGCCCTTGGGCTACTGCTTTGTTTAAGGCAGTGTTGCAACCACCCATTTTTTGTTTCGAGTCAGCATGATTCACAAAACTTTGCAGACTTGGACAAGCCTGCCAGAAGATTCCTTGAAACCCTTCATGATTCTCCAAGTTCAGATCAGATTCTCCCCACCCAAGCACATGTCGGAGAGGTTGTTGAGGATATCGATCGGGTTGGAAACACAGAGTGTCCCATATGCTTGGATTGCACATATGATCCTGTACTTACACCATGTGGACATAAGATGTGCAGGGAGTGTCTGATCTCAAGGTGGGAGAGACAAAGATGGCCCTATCTTGGTAGTTTTGGTCAATGCCTAGTATGTCGGAAATGTATGGACAAAACTGACCTCAAAACTTGCACAATAGAAAACTGTTTCCAGGTTGGAGTCGAGGAAAACTGGAAGGAGTACTCTTCTAAGGTTTCAAAGCTCTTGGACATCTTGGAACAAATTCTTCAGTCAGGTCCTGATGAAAAGTGCATCATTTTCAGTCAGTGGACTTCATATTTGGATCTCTTGGAGGGTGTTTTTAACGTCTTCAGCCTTTACCGCACCAAAGATAAACAGTTTGCAGTACTCTTTTTGCAAGTTAATTTCCCTTATTGCATTTCAGGTCTTGTTGATGTGTTTAAGAACTGA

Protein Analysis

569

Amino Acids

63.76

Weight (kDa)

5.01

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 35 - 169 8.1e-17 SNF2-related domain
zf-C3HC4_2 PF13923 419 - 446 5.3e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 420 - 451 7.8e-08 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 818
Acc16I TGCGCA 1 cut(s) 741
AccB7I CCANNNNNTGG 1 cut(s) 1009
AccII CGCG 1 cut(s) 354
AciI CCGC 2 cut(s) 352, 1621
AclWI GGATC 4 cut(s) 200, 499, 1280, 1590
AcsI RAATTY 1 cut(s) 1521
AcuI CTGAAG 5 cut(s) 585, 885, 966, 1511, 1594
AdeI CACNNNGTG 2 cut(s) 1257, 1304
AfaI GTAC 4 cut(s) 714, 1293, 1481, 1647
AfiI CCNNNNNNNGG 5 cut(s) 164, 239, 637, 1009, 1367
AflII CTTAAG 1 cut(s) 977
AflIII ACRYGT 1 cut(s) 1210
AgsI TTSAA 7 cut(s) 62, 185, 498, 758, 923, 1160, 1497
AjnI CCWGG 2 cut(s) 444, 1449
AjuI GAANNNNNNNTTGG 2 cut(s) 558, 590
AluBI AGCT 5 cut(s) 8, 171, 479, 950, 1501
AluI AGCT 5 cut(s) 8, 171, 479, 950, 1501
Alw21I GWGCWC 1 cut(s) 471
Alw26I GTCTC 1 cut(s) 1342
AlwI GGATC 4 cut(s) 200, 499, 1280, 1590
AlwNI CAGNNNCTG 1 cut(s) 1538
Ama87I CYCGRG 1 cut(s) 858
AoxI GGCC 2 cut(s) 893, 1358
ApoI RAATTY 1 cut(s) 1521
ArsI GACNNNNNNTTYG 2 cut(s) 1561, 1593
Asp700I GAANNNNTTC 2 cut(s) 1164, 1521
AspLEI GCGC 2 cut(s) 286, 742
AspS9I GGNCC 6 cut(s) 518, 536, 578, 894, 1359, 1535
AsuC2I CCSGG 1 cut(s) 639
AsuHPI GGTGA 3 cut(s) 44, 370, 658
AvaI CYCGRG 1 cut(s) 858
AvaII GGWCC 4 cut(s) 518, 536, 578, 1535
AxyI CCTNAGG 1 cut(s) 717
BbsI GAAGAC 2 cut(s) 128, 1600
Bbv12I GWGCWC 1 cut(s) 471
BbvCI CCTCAGC 1 cut(s) 852
BccI CCATC 2 cut(s) 767, 1350
BcgI CGANNNNNNTGC 2 cut(s) 719, 753
BciT130I CCWGG 2 cut(s) 446, 1451
BclI TGATCA 1 cut(s) 586
BcnI CCSGG 1 cut(s) 639
BcoDI GTCTC 1 cut(s) 1342
BfaI CTAG 3 cut(s) 9, 96, 1388
BfrI CTTAAG 1 cut(s) 977
BisI GCNGC 1 cut(s) 352
BlsI GCNGC 1 cut(s) 353
BmcAI AGTACT 2 cut(s) 1481, 1647
Bme1390I CCNGG 3 cut(s) 446, 639, 1451
Bme18I GGWCC 4 cut(s) 518, 536, 578, 1535
BmeT110I CYCGRG 1 cut(s) 858
BmgT120I GGNCC 6 cut(s) 518, 536, 578, 894, 1359, 1535
BmiI GGNNCC 2 cut(s) 519, 538
BmrFI CCNGG 3 cut(s) 446, 639, 1451
BmrI ACTGGG 1 cut(s) 125
BmsI GCATC 4 cut(s) 94, 354, 787, 1560
BmuI ACTGGG 1 cut(s) 125
BpiI GAAGAC 2 cut(s) 128, 1600
Bpu10I CCTNAGC 1 cut(s) 852
BpuEI CTTGAG 2 cut(s) 822, 1321
BpuMI CCSGG 1 cut(s) 639
Bsa29I ATCGAT 1 cut(s) 1236
BsaAI YACGTR 1 cut(s) 420
BsaBI GATNNNNATC 1 cut(s) 1236
BsaJI CCNNGG 4 cut(s) 158, 857, 882, 1048
BsaXI ACNNNNNCTCC 2 cut(s) 1209, 1239
Bsc4I CCNNNNNNNGG 5 cut(s) 164, 239, 637, 1009, 1367
Bse1I ACTGG 4 cut(s) 120, 458, 1003, 1475
Bse21I CCTNAGG 1 cut(s) 717
Bse3DI GCAATG 1 cut(s) 114
Bse8I GATNNNNATC 1 cut(s) 1236
BseBI CCWGG 2 cut(s) 446, 1451
BseCI ATCGAT 1 cut(s) 1236
BseDI CCNNGG 4 cut(s) 158, 857, 882, 1048
BseGI GGATG 1 cut(s) 342
BseJI GATNNNNATC 1 cut(s) 1236
BseLI CCNNNNNNNGG 5 cut(s) 164, 239, 637, 1009, 1367
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 2 cut(s) 731, 866
BseNI ACTGG 4 cut(s) 120, 458, 1003, 1475
BseRI GAGGAG 1 cut(s) 691
BsgI GTGCAG 1 cut(s) 1339
Bsh1236I CGCG 1 cut(s) 354
Bsh1285I CGRYCG 1 cut(s) 1240
BshFI GGCC 2 cut(s) 895, 1360
BshVI ATCGAT 1 cut(s) 1236
BsiEI CGRYCG 1 cut(s) 1240
BsiHKAI GWGCWC 1 cut(s) 471
BsiHKCI CYCGRG 1 cut(s) 858
BsiSI CCGG 1 cut(s) 638
BslFI GGGAC 3 cut(s) 126, 522, 1245
BslI CCNNNNNNNGG 5 cut(s) 164, 239, 637, 1009, 1367
BsmAI GTCTC 1 cut(s) 1342
BsmFI GGGAC 3 cut(s) 126, 522, 1245
BsnI GGCC 2 cut(s) 895, 1360
BsoBI CYCGRG 1 cut(s) 858
Bsp1286I GDGCHC 1 cut(s) 471
Bsp143I GATC 9 cut(s) 205, 491, 586, 983, 1186, 1237, 1285, 1332, 1582
Bsp19I CCATGG 1 cut(s) 882
BspACI CCGC 2 cut(s) 352, 1621
BspANI GGCC 2 cut(s) 895, 1360
BspCNI CTCAG 2 cut(s) 730, 865
BspDI ATCGAT 1 cut(s) 1236
BspFNI CGCG 1 cut(s) 354
BspHI TCATGA 1 cut(s) 1168
BspLI GGNNCC 2 cut(s) 519, 538
BspPI GGATC 4 cut(s) 200, 499, 1280, 1590
BspTI CTTAAG 1 cut(s) 977
BsrDI GCAATG 1 cut(s) 114
BsrI ACTGG 4 cut(s) 120, 458, 1003, 1475
BssECI CCNNGG 4 cut(s) 158, 857, 882, 1048
BssMI GATC 9 cut(s) 205, 491, 586, 983, 1186, 1237, 1285, 1332, 1582
BssT1I CCWWGG 3 cut(s) 158, 882, 1048
Bst2UI CCWGG 2 cut(s) 446, 1451
Bst4CI ACNGT 6 cut(s) 136, 434, 692, 785, 1445, 1638
Bst6I CTCTTC 2 cut(s) 52, 1489
BstAFI CTTAAG 1 cut(s) 977
BstBAI YACGTR 1 cut(s) 420
BstC8I GCNNGC 1 cut(s) 1143
BstDEI CTNAG 3 cut(s) 717, 852, 1488
BstDSI CCRYGG 1 cut(s) 882
BstF5I GGATG 1 cut(s) 342
BstFNI CGCG 1 cut(s) 354
BstHHI GCGC 2 cut(s) 286, 742
BstKTI GATC 9 cut(s) 208, 494, 589, 986, 1189, 1240, 1288, 1335, 1585
BstMAI GTCTC 1 cut(s) 1342
BstMBI GATC 9 cut(s) 205, 491, 586, 983, 1186, 1237, 1285, 1332, 1582
BstMCI CGRYCG 1 cut(s) 1240
BstMWI GCNNNNNNNGC 3 cut(s) 351, 1275, 1620
BstNI CCWGG 2 cut(s) 446, 1451
BstNSI RCATGY 2 cut(s) 1046, 1214
BstSCI CCNGG 3 cut(s) 444, 637, 1449
BstSNI TACGTA 1 cut(s) 420
BstUI CGCG 1 cut(s) 354
BstV2I GAAGAC 2 cut(s) 128, 1600
BstX2I RGATCY 3 cut(s) 205, 491, 1582
BstXI CCANNNNNNTGG 1 cut(s) 1270
BstYI RGATCY 3 cut(s) 205, 491, 1582
Bsu15I ATCGAT 1 cut(s) 1236
Bsu36I CCTNAGG 1 cut(s) 717
BsuRI GGCC 2 cut(s) 895, 1360
BsuTUI ATCGAT 1 cut(s) 1236
BtgI CCRYGG 1 cut(s) 882
BtsCI GGATG 1 cut(s) 342
BtsI GCAGTG 1 cut(s) 1079
BtsIMutI CAGTG 6 cut(s) 439, 561, 697, 790, 1079, 1571
Cac8I GCNNGC 1 cut(s) 1143
CaiI CAGNNNCTG 1 cut(s) 1538
CciI TCATGA 1 cut(s) 1168
CfoI GCGC 2 cut(s) 286, 742
Cfr13I GGNCC 6 cut(s) 518, 536, 578, 894, 1359, 1535
ClaI ATCGAT 1 cut(s) 1236
CsiI ACCWGGT 1 cut(s) 444
Csp6I GTAC 4 cut(s) 713, 1292, 1480, 1646
CviAII CATG 9 cut(s) 329, 590, 686, 883, 1043, 1109, 1169, 1211, 1302
CviQI GTAC 4 cut(s) 713, 1292, 1480, 1646
DdeI CTNAG 3 cut(s) 717, 852, 1488
DpnI GATC 9 cut(s) 207, 493, 588, 985, 1188, 1239, 1287, 1334, 1584
DpnII GATC 9 cut(s) 205, 491, 586, 983, 1186, 1237, 1285, 1332, 1582
DraIII CACNNNGTG 2 cut(s) 1257, 1304
DrdI GACNNNNNNGTC 1 cut(s) 818
DseDI GACNNNNNNGTC 1 cut(s) 818
Eam1104I CTCTTC 2 cut(s) 52, 1489
EarI CTCTTC 2 cut(s) 52, 1489
Eco105I TACGTA 1 cut(s) 420
Eco130I CCWWGG 3 cut(s) 158, 882, 1048
Eco32I GATATC 1 cut(s) 1234
Eco47I GGWCC 4 cut(s) 518, 536, 578, 1535
Eco57I CTGAAG 5 cut(s) 585, 885, 966, 1511, 1594
Eco81I CCTNAGG 1 cut(s) 717
Eco88I CYCGRG 1 cut(s) 858
EcoO109I RGGNCCY 3 cut(s) 518, 536, 1535
EcoRII CCWGG 2 cut(s) 444, 1449
EcoRV GATATC 1 cut(s) 1234
EcoT14I CCWWGG 3 cut(s) 158, 882, 1048
ErhI CCWWGG 3 cut(s) 158, 882, 1048
FaeI CATG 9 cut(s) 332, 593, 689, 886, 1046, 1112, 1172, 1214, 1305
FaqI GGGAC 3 cut(s) 126, 522, 1245
FatI CATG 9 cut(s) 328, 589, 685, 882, 1042, 1108, 1168, 1210, 1301
FauNDI CATATG 2 cut(s) 1265, 1282
FbaI TGATCA 1 cut(s) 586
Fnu4HI GCNGC 1 cut(s) 352
FokI GGATG 1 cut(s) 349
Fsp4HI GCNGC 1 cut(s) 352
FspBI CTAG 3 cut(s) 9, 96, 1388
FspI TGCGCA 1 cut(s) 741
GlaI GCGC 2 cut(s) 285, 741
GluI GCNGC 1 cut(s) 352
HaeIII GGCC 2 cut(s) 895, 1360
HapII CCGG 1 cut(s) 638
HhaI GCGC 2 cut(s) 286, 742
Hin1II CATG 9 cut(s) 332, 593, 689, 886, 1046, 1112, 1172, 1214, 1305
Hin6I GCGC 2 cut(s) 284, 740
HinP1I GCGC 2 cut(s) 284, 740
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HpaII CCGG 1 cut(s) 638
HphI GGTGA 3 cut(s) 44, 370, 658
Hpy166II GTNNAC 4 cut(s) 451, 649, 1307, 1569
Hpy188III TCNNGA 7 cut(s) 209, 382, 719, 839, 914, 1169, 1538
Hpy8I GTNNAC 4 cut(s) 451, 649, 1307, 1569
HpyAV CCTTC 7 cut(s) 271, 503, 531, 560, 983, 1175, 1468
HpyCH4III ACNGT 6 cut(s) 136, 434, 692, 785, 1445, 1638
HpyCH4IV ACGT 2 cut(s) 419, 1605
HpyF10VI GCNNNNNNNGC 3 cut(s) 351, 1275, 1620
HpyF3I CTNAG 3 cut(s) 717, 852, 1488
HpySE526I ACGT 2 cut(s) 419, 1605
Hsp92II CATG 9 cut(s) 332, 593, 689, 886, 1046, 1112, 1172, 1214, 1305
HspAI GCGC 2 cut(s) 284, 740
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 9 cut(s) 205, 491, 586, 983, 1186, 1237, 1285, 1332, 1582
LweI GCATC 4 cut(s) 94, 354, 787, 1560
MabI ACCWGGT 1 cut(s) 444
MaeI CTAG 3 cut(s) 9, 96, 1388
MaeII ACGT 2 cut(s) 419, 1605
MaeIII GTNAC 2 cut(s) 809, 868
MalI GATC 9 cut(s) 207, 493, 588, 985, 1188, 1239, 1287, 1334, 1584
MboI GATC 9 cut(s) 205, 491, 586, 983, 1186, 1237, 1285, 1332, 1582
MfeI CAATTG 1 cut(s) 761
MflI RGATCY 3 cut(s) 205, 491, 1582
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 7 cut(s) 63, 186, 666, 761, 889, 1521, 1663
MlyI GAGTC 4 cut(s) 118, 311, 1111, 1467
MmeI TCCRAC 4 cut(s) 1195, 1225, 1376, 1435
MroXI GAANNNNTTC 2 cut(s) 1164, 1521
MseI TTAA 8 cut(s) 227, 266, 288, 978, 1067, 1602, 1662, 1701
MslI CAYNNNNRTG 2 cut(s) 690, 1035
MspCI CTTAAG 1 cut(s) 977
MspI CCGG 1 cut(s) 638
MspR9I CCNGG 3 cut(s) 446, 639, 1451
MunI CAATTG 1 cut(s) 761
MvaI CCWGG 2 cut(s) 446, 1451
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 3 cut(s) 351, 1275, 1620
NciI CCSGG 1 cut(s) 639
NcoI CCATGG 1 cut(s) 882
NdeI CATATG 2 cut(s) 1265, 1282
NdeII GATC 9 cut(s) 205, 491, 586, 983, 1186, 1237, 1285, 1332, 1582
NlaIII CATG 9 cut(s) 332, 593, 689, 886, 1046, 1112, 1172, 1214, 1305
NlaIV GGNNCC 2 cut(s) 519, 538
NmuCI GTSAC 2 cut(s) 809, 868
NsbI TGCGCA 1 cut(s) 741
NspI RCATGY 2 cut(s) 1046, 1214
PagI TCATGA 1 cut(s) 1168
PciI ACATGT 1 cut(s) 1210
PdmI GAANNNNTTC 2 cut(s) 1164, 1521
PfeI GAWTC 8 cut(s) 15, 92, 594, 778, 1112, 1152, 1172, 1192
PflMI CCANNNNNTGG 1 cut(s) 1009
PkrI GCNGC 1 cut(s) 353
Ple19I CGATCG 1 cut(s) 1240
PleI GAGTC 4 cut(s) 118, 310, 1110, 1466
PpsI GAGTC 4 cut(s) 118, 310, 1110, 1466
Ppu21I YACGTR 1 cut(s) 420
PpuMI RGGWCCY 3 cut(s) 518, 536, 1535
PscI ACATGT 1 cut(s) 1210
Psp5II RGGWCCY 3 cut(s) 518, 536, 1535
Psp6I CCWGG 2 cut(s) 444, 1449
PspGI CCWGG 2 cut(s) 444, 1449
PspN4I GGNNCC 2 cut(s) 519, 538
PspPI GGNCC 6 cut(s) 518, 536, 578, 894, 1359, 1535
PspPPI RGGWCCY 3 cut(s) 518, 536, 1535
PstNI CAGNNNCTG 1 cut(s) 1538
PsuI RGATCY 3 cut(s) 205, 491, 1582
PvuI CGATCG 1 cut(s) 1240
RsaI GTAC 4 cut(s) 714, 1293, 1481, 1647
RsaNI GTAC 4 cut(s) 713, 1292, 1480, 1646
RseI CAYNNNNRTG 2 cut(s) 690, 1035
SaqAI TTAA 8 cut(s) 227, 266, 288, 978, 1067, 1602, 1662, 1701
SatI GCNGC 1 cut(s) 352
Sau3AI GATC 9 cut(s) 205, 491, 586, 983, 1186, 1237, 1285, 1332, 1582
Sau96I GGNCC 6 cut(s) 518, 536, 578, 894, 1359, 1535
ScaI AGTACT 2 cut(s) 1481, 1647
SchI GAGTC 4 cut(s) 118, 311, 1111, 1467
ScrFI CCNGG 3 cut(s) 446, 639, 1451
SduI GDGCHC 1 cut(s) 471
SexAI ACCWGGT 1 cut(s) 444
SfaNI GCATC 4 cut(s) 94, 354, 787, 1560
SinI GGWCC 4 cut(s) 518, 536, 578, 1535
SmiMI CAYNNNNRTG 2 cut(s) 690, 1035
SmlI CTYRAG 3 cut(s) 837, 977, 1336
SmoI CTYRAG 3 cut(s) 837, 977, 1336
SnaBI TACGTA 1 cut(s) 420
Sse9I AATT 7 cut(s) 63, 186, 666, 761, 889, 1521, 1663
SsiI CCGC 2 cut(s) 352, 1621
SspMI CTAG 3 cut(s) 9, 96, 1388
StyD4I CCNGG 3 cut(s) 444, 637, 1449
StyI CCWWGG 3 cut(s) 158, 882, 1048
TaaI ACNGT 6 cut(s) 136, 434, 692, 785, 1445, 1638
TaiI ACGT 2 cut(s) 422, 1608
TaqI TCGA 4 cut(s) 471, 1100, 1236, 1461
TasI AATT 7 cut(s) 63, 186, 666, 761, 889, 1521, 1663
TatI WGTACW 3 cut(s) 1291, 1479, 1645
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 8 cut(s) 15, 92, 594, 778, 1112, 1152, 1172, 1192
Tru1I TTAA 8 cut(s) 227, 266, 288, 978, 1067, 1602, 1662, 1701
Tru9I TTAA 8 cut(s) 227, 266, 288, 978, 1067, 1602, 1662, 1701
TscAI CASTG 6 cut(s) 439, 568, 697, 790, 1079, 1571
TseFI GTSAC 2 cut(s) 809, 868
Tsp45I GTSAC 2 cut(s) 809, 868
TspDTI ATGAA 4 cut(s) 489, 1157, 1557, 1563
TspGWI ACGGA 1 cut(s) 984
TspRI CASTG 6 cut(s) 439, 568, 697, 790, 1079, 1571
Van91I CCANNNNNTGG 1 cut(s) 1009
Vha464I CTTAAG 1 cut(s) 977
VpaK11BI GGWCC 4 cut(s) 518, 536, 578, 1535
XapI RAATTY 1 cut(s) 1521
XceI RCATGY 2 cut(s) 1046, 1214
XcmI CCANNNNNNNNNTGG 1 cut(s) 880
XmnI GAANNNNTTC 2 cut(s) 1164, 1521
XspI CTAG 3 cut(s) 9, 96, 1388
ZrmI AGTACT 2 cut(s) 1481, 1647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.