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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 687 |
| Acc36I | ACCTGC | 1 cut(s) | 964 |
| AccII | CGCG | 1 cut(s) | 445 |
| AciI | CCGC | 6 cut(s) | 5, 9, 42, 56, 353, 359 |
| AcoI | YGGCCR | 2 cut(s) | 6, 325 |
| AcsI | RAATTY | 2 cut(s) | 541, 872 |
| AcuI | CTGAAG | 1 cut(s) | 440 |
| AcyI | GRCGYC | 1 cut(s) | 572 |
| AfaI | GTAC | 1 cut(s) | 340 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 352, 979 |
| AgsI | TTSAA | 3 cut(s) | 586, 762, 887 |
| AjiI | CACGTC | 1 cut(s) | 771 |
| AjnI | CCWGG | 2 cut(s) | 718, 753 |
| AluBI | AGCT | 6 cut(s) | 235, 611, 629, 647, 765, 838 |
| AluI | AGCT | 6 cut(s) | 235, 611, 629, 647, 765, 838 |
| Alw26I | GTCTC | 1 cut(s) | 590 |
| AoxI | GGCC | 4 cut(s) | 6, 249, 325, 961 |
| ApeKI | GCWGC | 7 cut(s) | 306, 356, 608, 644, 674, 688, 791 |
| ApoI | RAATTY | 2 cut(s) | 541, 872 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 817, 849 |
| AspLEI | GCGC | 3 cut(s) | 393, 447, 688 |
| AspS9I | GGNCC | 1 cut(s) | 249 |
| AsuHPI | GGTGA | 2 cut(s) | 269, 881 |
| AsuNHI | GCTAGC | 1 cut(s) | 986 |
| BaeGI | GKGCMC | 1 cut(s) | 970 |
| BalI | TGGCCA | 1 cut(s) | 327 |
| BbvI | GCAGC | 7 cut(s) | 318, 343, 620, 656, 661, 700, 803 |
| BccI | CCATC | 3 cut(s) | 86, 104, 653 |
| BceAI | ACGGC | 3 cut(s) | 330, 531, 948 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 780, 814, 889, 923 |
| BciT130I | CCWGG | 2 cut(s) | 720, 755 |
| BcoDI | GTCTC | 1 cut(s) | 590 |
| BfaI | CTAG | 1 cut(s) | 987 |
| BfmI | CTRYAG | 2 cut(s) | 304, 957 |
| BfuAI | ACCTGC | 1 cut(s) | 964 |
| Bme1390I | CCNGG | 2 cut(s) | 720, 755 |
| BmgBI | CACGTC | 1 cut(s) | 771 |
| BmgT120I | GGNCC | 1 cut(s) | 249 |
| BmiI | GGNNCC | 2 cut(s) | 141, 738 |
| BmrFI | CCNGG | 2 cut(s) | 720, 755 |
| BmsI | GCATC | 3 cut(s) | 138, 155, 669 |
| BmtI | GCTAGC | 1 cut(s) | 990 |
| BpmI | CTGGAG | 2 cut(s) | 615, 737 |
| Bsa29I | ATCGAT | 1 cut(s) | 439 |
| BsaBI | GATNNNNATC | 1 cut(s) | 819 |
| BsaHI | GRCGYC | 1 cut(s) | 572 |
| BsaJI | CCNNGG | 3 cut(s) | 718, 728, 973 |
| BsaWI | WCCGGW | 2 cut(s) | 739, 778 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 595, 613, 625, 643, 760, 790 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 352, 979 |
| Bse1I | ACTGG | 2 cut(s) | 632, 881 |
| Bse8I | GATNNNNATC | 1 cut(s) | 819 |
| BseBI | CCWGG | 2 cut(s) | 720, 755 |
| BseCI | ATCGAT | 1 cut(s) | 439 |
| BseDI | CCNNGG | 3 cut(s) | 718, 728, 973 |
| BseGI | GGATG | 1 cut(s) | 664 |
| BseJI | GATNNNNATC | 1 cut(s) | 819 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 352, 979 |
| BseMII | CTCAG | 3 cut(s) | 126, 250, 843 |
| BseNI | ACTGG | 2 cut(s) | 632, 881 |
| BseRI | GAGGAG | 1 cut(s) | 152 |
| BseSI | GKGCMC | 1 cut(s) | 970 |
| BseX3I | CGGCCG | 1 cut(s) | 6 |
| BseXI | GCAGC | 7 cut(s) | 318, 343, 620, 656, 661, 700, 803 |
| BseYI | CCCAGC | 1 cut(s) | 838 |
| Bsh1236I | CGCG | 1 cut(s) | 445 |
| Bsh1285I | CGRYCG | 2 cut(s) | 9, 443 |
| BshFI | GGCC | 4 cut(s) | 8, 251, 327, 963 |
| BshVI | ATCGAT | 1 cut(s) | 439 |
| BsiEI | CGRYCG | 2 cut(s) | 9, 443 |
| BsiSI | CCGG | 2 cut(s) | 740, 779 |
| BslFI | GGGAC | 2 cut(s) | 365, 698 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 352, 979 |
| BsmAI | GTCTC | 1 cut(s) | 590 |
| BsmFI | GGGAC | 2 cut(s) | 365, 698 |
| BsnI | GGCC | 4 cut(s) | 8, 251, 327, 963 |
| Bsp1286I | GDGCHC | 1 cut(s) | 970 |
| Bsp143I | GATC | 2 cut(s) | 85, 440 |
| BspACI | CCGC | 6 cut(s) | 5, 9, 42, 56, 353, 359 |
| BspANI | GGCC | 4 cut(s) | 8, 251, 327, 963 |
| BspCNI | CTCAG | 3 cut(s) | 127, 249, 844 |
| BspDI | ATCGAT | 1 cut(s) | 439 |
| BspFNI | CGCG | 1 cut(s) | 445 |
| BspLI | GGNNCC | 2 cut(s) | 141, 738 |
| BspMAI | CTGCAG | 2 cut(s) | 308, 961 |
| BspMI | ACCTGC | 1 cut(s) | 964 |
| BspOI | GCTAGC | 1 cut(s) | 990 |
| BsrI | ACTGG | 2 cut(s) | 632, 881 |
| BssECI | CCNNGG | 3 cut(s) | 718, 728, 973 |
| BssMI | GATC | 2 cut(s) | 85, 440 |
| BssNI | GRCGYC | 1 cut(s) | 572 |
| BssT1I | CCWWGG | 1 cut(s) | 973 |
| Bst2UI | CCWGG | 2 cut(s) | 720, 755 |
| Bst4CI | ACNGT | 2 cut(s) | 732, 869 |
| BstACI | GRCGYC | 1 cut(s) | 572 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 965 |
| BstC8I | GCNNGC | 4 cut(s) | 13, 684, 961, 988 |
| BstDEI | CTNAG | 4 cut(s) | 135, 236, 852, 891 |
| BstDSI | CCRYGG | 1 cut(s) | 728 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 977 |
| BstF5I | GGATG | 1 cut(s) | 664 |
| BstFNI | CGCG | 1 cut(s) | 445 |
| BstHHI | GCGC | 3 cut(s) | 393, 447, 688 |
| BstKTI | GATC | 2 cut(s) | 88, 443 |
| BstMAI | GTCTC | 1 cut(s) | 590 |
| BstMBI | GATC | 2 cut(s) | 85, 440 |
| BstMCI | CGRYCG | 2 cut(s) | 9, 443 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 683, 688, 965 |
| BstNI | CCWGG | 2 cut(s) | 720, 755 |
| BstSCI | CCNGG | 2 cut(s) | 718, 753 |
| BstSFI | CTRYAG | 2 cut(s) | 304, 957 |
| BstSLI | GKGCMC | 1 cut(s) | 970 |
| BstUI | CGCG | 1 cut(s) | 445 |
| BstV1I | GCAGC | 7 cut(s) | 318, 343, 620, 656, 661, 700, 803 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 335 |
| BstZI | CGGCCG | 1 cut(s) | 6 |
| Bsu15I | ATCGAT | 1 cut(s) | 439 |
| BsuRI | GGCC | 4 cut(s) | 8, 251, 327, 963 |
| BsuTUI | ATCGAT | 1 cut(s) | 439 |
| BtgI | CCRYGG | 1 cut(s) | 728 |
| BtgZI | GCGATG | 2 cut(s) | 64, 692 |
| BtrI | CACGTC | 1 cut(s) | 771 |
| BtsCI | GGATG | 1 cut(s) | 664 |
| BtsI | GCAGTG | 1 cut(s) | 518 |
| BtsIMutI | CAGTG | 1 cut(s) | 518 |
| BveI | ACCTGC | 1 cut(s) | 964 |
| Cac8I | GCNNGC | 4 cut(s) | 13, 684, 961, 988 |
| CciNI | GCGGCCGC | 1 cut(s) | 6 |
| CfoI | GCGC | 3 cut(s) | 393, 447, 688 |
| Cfr13I | GGNCC | 1 cut(s) | 249 |
| ClaI | ATCGAT | 1 cut(s) | 439 |
| CseI | GACGC | 3 cut(s) | 446, 561, 700 |
| Csp6I | GTAC | 1 cut(s) | 339 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 762, 797 |
| CviAII | CATG | 3 cut(s) | 329, 473, 640 |
| CviQI | GTAC | 1 cut(s) | 339 |
| DdeI | CTNAG | 4 cut(s) | 135, 236, 852, 891 |
| DpnI | GATC | 2 cut(s) | 87, 442 |
| DpnII | GATC | 2 cut(s) | 85, 440 |
| EaeI | YGGCCR | 2 cut(s) | 6, 325 |
| EagI | CGGCCG | 1 cut(s) | 6 |
| EclXI | CGGCCG | 1 cut(s) | 6 |
| Eco130I | CCWWGG | 1 cut(s) | 973 |
| Eco32I | GATATC | 1 cut(s) | 301 |
| Eco52I | CGGCCG | 1 cut(s) | 6 |
| Eco57I | CTGAAG | 1 cut(s) | 440 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 977 |
| EcoRI | GAATTC | 1 cut(s) | 872 |
| EcoRII | CCWGG | 2 cut(s) | 718, 753 |
| EcoRV | GATATC | 1 cut(s) | 301 |
| EcoT14I | CCWWGG | 1 cut(s) | 973 |
| ErhI | CCWWGG | 1 cut(s) | 973 |
| FaeI | CATG | 3 cut(s) | 332, 476, 643 |
| FaiI | YATR | 8 cut(s) | 228, 285, 330, 474, 566, 641, 656, 951 |
| FaqI | GGGAC | 2 cut(s) | 365, 698 |
| FatI | CATG | 3 cut(s) | 328, 472, 639 |
| FokI | GGATG | 1 cut(s) | 671 |
| FspBI | CTAG | 1 cut(s) | 987 |
| FspI | TGCGCA | 1 cut(s) | 687 |
| GlaI | GCGC | 3 cut(s) | 392, 446, 687 |
| GsaI | CCCAGC | 1 cut(s) | 842 |
| GsuI | CTGGAG | 2 cut(s) | 615, 737 |
| HaeIII | GGCC | 4 cut(s) | 8, 251, 327, 963 |
| HapII | CCGG | 2 cut(s) | 740, 779 |
| HgaI | GACGC | 3 cut(s) | 446, 561, 700 |
| HhaI | GCGC | 3 cut(s) | 393, 447, 688 |
| Hin1I | GRCGYC | 1 cut(s) | 572 |
| Hin1II | CATG | 3 cut(s) | 332, 476, 643 |
| Hin6I | GCGC | 3 cut(s) | 391, 445, 686 |
| HinP1I | GCGC | 3 cut(s) | 391, 445, 686 |
| HincII | GTYRAC | 1 cut(s) | 774 |
| HindII | GTYRAC | 1 cut(s) | 774 |
| HinfI | GANTC | 5 cut(s) | 240, 276, 287, 598, 698 |
| HpaII | CCGG | 2 cut(s) | 740, 779 |
| HphI | GGTGA | 2 cut(s) | 269, 881 |
| Hpy166II | GTNNAC | 1 cut(s) | 774 |
| Hpy188I | TCNGA | 5 cut(s) | 136, 239, 292, 415, 497 |
| Hpy188III | TCNNGA | 2 cut(s) | 205, 595 |
| Hpy8I | GTNNAC | 1 cut(s) | 774 |
| Hpy99I | CGWCG | 2 cut(s) | 429, 577 |
| HpyAV | CCTTC | 3 cut(s) | 227, 390, 807 |
| HpyCH4III | ACNGT | 2 cut(s) | 732, 869 |
| HpyCH4IV | ACGT | 1 cut(s) | 770 |
| HpyCH4V | TGCA | 4 cut(s) | 168, 306, 910, 959 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 683, 688, 965 |
| HpyF3I | CTNAG | 4 cut(s) | 135, 236, 852, 891 |
| HpySE526I | ACGT | 1 cut(s) | 770 |
| Hsp92I | GRCGYC | 1 cut(s) | 572 |
| Hsp92II | CATG | 3 cut(s) | 332, 476, 643 |
| HspAI | GCGC | 3 cut(s) | 391, 445, 686 |
| Kzo9I | GATC | 2 cut(s) | 85, 440 |
| LmnI | GCTCC | 6 cut(s) | 139, 406, 616, 634, 652, 770 |
| Lsp1109I | GCAGC | 7 cut(s) | 318, 343, 620, 656, 661, 700, 803 |
| LweI | GCATC | 3 cut(s) | 138, 155, 669 |
| MaeI | CTAG | 1 cut(s) | 987 |
| MaeII | ACGT | 1 cut(s) | 770 |
| MaeIII | GTNAC | 2 cut(s) | 450, 511 |
| MalI | GATC | 2 cut(s) | 87, 442 |
| MboI | GATC | 2 cut(s) | 85, 440 |
| MboII | GAAGA | 2 cut(s) | 119, 913 |
| MhlI | GDGCHC | 1 cut(s) | 970 |
| MlsI | TGGCCA | 1 cut(s) | 327 |
| MluNI | TGGCCA | 1 cut(s) | 327 |
| MlyI | GAGTC | 3 cut(s) | 285, 296, 592 |
| MmeI | TCCRAC | 2 cut(s) | 475, 714 |
| Mox20I | TGGCCA | 1 cut(s) | 327 |
| MscI | TGGCCA | 1 cut(s) | 327 |
| MseI | TTAA | 2 cut(s) | 192, 545 |
| Msp20I | TGGCCA | 1 cut(s) | 327 |
| MspA1I | CMGCKG | 2 cut(s) | 56, 838 |
| MspI | CCGG | 2 cut(s) | 740, 779 |
| MspR9I | CCNGG | 2 cut(s) | 720, 755 |
| MvaI | CCWGG | 2 cut(s) | 720, 755 |
| MvnI | CGCG | 1 cut(s) | 445 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 683, 688, 965 |
| NdeII | GATC | 2 cut(s) | 85, 440 |
| NheI | GCTAGC | 1 cut(s) | 986 |
| NlaIII | CATG | 3 cut(s) | 332, 476, 643 |
| NlaIV | GGNNCC | 2 cut(s) | 141, 738 |
| NmuCI | GTSAC | 1 cut(s) | 450 |
| NotI | GCGGCCGC | 1 cut(s) | 6 |
| NsbI | TGCGCA | 1 cut(s) | 687 |
| PfeI | GAWTC | 2 cut(s) | 240, 698 |
| Ple19I | CGATCG | 1 cut(s) | 443 |
| PleI | GAGTC | 3 cut(s) | 284, 295, 592 |
| PpsI | GAGTC | 3 cut(s) | 284, 295, 592 |
| Psp6I | CCWGG | 2 cut(s) | 718, 753 |
| PspFI | CCCAGC | 1 cut(s) | 838 |
| PspGI | CCWGG | 2 cut(s) | 718, 753 |
| PspN4I | GGNNCC | 2 cut(s) | 141, 738 |
| PspPI | GGNCC | 1 cut(s) | 249 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 331, 363 |
| PstI | CTGCAG | 2 cut(s) | 308, 961 |
| PvuI | CGATCG | 1 cut(s) | 443 |
| PvuII | CAGCTG | 1 cut(s) | 838 |
| RsaI | GTAC | 1 cut(s) | 340 |
| RsaNI | GTAC | 1 cut(s) | 339 |
| SaqAI | TTAA | 2 cut(s) | 192, 545 |
| Sau3AI | GATC | 2 cut(s) | 85, 440 |
| Sau96I | GGNCC | 1 cut(s) | 249 |
| SbfI | CCTGCAGG | 1 cut(s) | 961 |
| SchI | GAGTC | 3 cut(s) | 285, 296, 592 |
| ScrFI | CCNGG | 2 cut(s) | 720, 755 |
| SdaI | CCTGCAGG | 1 cut(s) | 961 |
| SduI | GDGCHC | 1 cut(s) | 970 |
| SfaNI | GCATC | 3 cut(s) | 138, 155, 669 |
| SfcI | CTRYAG | 2 cut(s) | 304, 957 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 961 |
| SsiI | CCGC | 6 cut(s) | 5, 9, 42, 56, 353, 359 |
| SspMI | CTAG | 1 cut(s) | 987 |
| StyD4I | CCNGG | 2 cut(s) | 718, 753 |
| StyI | CCWWGG | 1 cut(s) | 973 |
| TaaI | ACNGT | 2 cut(s) | 732, 869 |
| TaiI | ACGT | 1 cut(s) | 773 |
| TaqI | TCGA | 5 cut(s) | 187, 279, 439, 594, 899 |
| TauI | GCSGC | 4 cut(s) | 8, 11, 44, 356 |
| TfiI | GAWTC | 2 cut(s) | 240, 698 |
| Tru1I | TTAA | 2 cut(s) | 192, 545 |
| Tru9I | TTAA | 2 cut(s) | 192, 545 |
| TscAI | CASTG | 1 cut(s) | 525 |
| TseFI | GTSAC | 1 cut(s) | 450 |
| TseI | GCWGC | 7 cut(s) | 306, 356, 608, 644, 674, 688, 791 |
| Tsp45I | GTSAC | 1 cut(s) | 450 |
| TspDTI | ATGAA | 1 cut(s) | 762 |
| TspGWI | ACGGA | 2 cut(s) | 442, 638 |
| TspRI | CASTG | 1 cut(s) | 525 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 977 |
| XapI | RAATTY | 2 cut(s) | 541, 872 |
| XspI | CTAG | 1 cut(s) | 987 |