Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 607 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 208 |
| AccBSI | CCGCTC | 2 cut(s) | 186, 229 |
| AccI | GTMKAC | 1 cut(s) | 45 |
| AciI | CCGC | 4 cut(s) | 184, 229, 362, 557 |
| AcsI | RAATTY | 2 cut(s) | 30, 682 |
| AcuI | CTGAAG | 1 cut(s) | 278 |
| AdeI | CACNNNGTG | 2 cut(s) | 150, 208 |
| AfaI | GTAC | 2 cut(s) | 132, 178 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 190, 208, 672 |
| AflII | CTTAAG | 1 cut(s) | 385 |
| AgsI | TTSAA | 2 cut(s) | 427, 543 |
| AjnI | CCWGG | 2 cut(s) | 204, 559 |
| AluBI | AGCT | 3 cut(s) | 73, 476, 606 |
| AluI | AGCT | 3 cut(s) | 73, 476, 606 |
| Alw26I | GTCTC | 1 cut(s) | 319 |
| AoxI | GGCC | 1 cut(s) | 87 |
| ApeKI | GCWGC | 2 cut(s) | 55, 212 |
| ApoI | RAATTY | 2 cut(s) | 30, 682 |
| AspS9I | GGNCC | 1 cut(s) | 87 |
| AsuHPI | GGTGA | 5 cut(s) | 107, 118, 408, 520, 691 |
| AsuNHI | GCTAGC | 1 cut(s) | 602 |
| BbvI | GCAGC | 2 cut(s) | 67, 199 |
| BccI | CCATC | 4 cut(s) | 403, 463, 568, 642 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 699 |
| BciT130I | CCWGG | 2 cut(s) | 206, 561 |
| BcoDI | GTCTC | 1 cut(s) | 319 |
| BfaI | CTAG | 4 cut(s) | 84, 147, 473, 603 |
| BfrI | CTTAAG | 1 cut(s) | 385 |
| BfuAI | ACCTGC | 1 cut(s) | 607 |
| BisI | GCNGC | 3 cut(s) | 56, 184, 213 |
| BlsI | GCNGC | 3 cut(s) | 57, 185, 214 |
| Bme1390I | CCNGG | 2 cut(s) | 206, 561 |
| BmgT120I | GGNCC | 1 cut(s) | 87 |
| BmrFI | CCNGG | 2 cut(s) | 206, 561 |
| BmsI | GCATC | 1 cut(s) | 501 |
| BmtI | GCTAGC | 1 cut(s) | 606 |
| BpmI | CTGGAG | 2 cut(s) | 474, 674 |
| BsaI | GGTCTC | 1 cut(s) | 319 |
| BsaJI | CCNNGG | 1 cut(s) | 12 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 472, 502, 601, 631 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 190, 208, 672 |
| Bse118I | RCCGGY | 3 cut(s) | 364, 505, 523 |
| Bse1I | ACTGG | 3 cut(s) | 329, 491, 691 |
| BseBI | CCWGG | 2 cut(s) | 206, 561 |
| BseDI | CCNNGG | 1 cut(s) | 12 |
| BseGI | GGATG | 3 cut(s) | 46, 505, 579 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 190, 208, 672 |
| BseMII | CTCAG | 1 cut(s) | 88 |
| BseNI | ACTGG | 3 cut(s) | 329, 491, 691 |
| BseRI | GAGGAG | 1 cut(s) | 51 |
| BseXI | GCAGC | 2 cut(s) | 67, 199 |
| BseYI | CCCAGC | 1 cut(s) | 445 |
| BsgI | GTGCAG | 1 cut(s) | 127 |
| BshFI | GGCC | 1 cut(s) | 89 |
| BsiSI | CCGG | 3 cut(s) | 365, 506, 524 |
| BslFI | GGGAC | 2 cut(s) | 169, 539 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 190, 208, 672 |
| BsmAI | GTCTC | 1 cut(s) | 319 |
| BsmFI | GGGAC | 2 cut(s) | 169, 539 |
| BsnI | GGCC | 1 cut(s) | 89 |
| Bso31I | GGTCTC | 1 cut(s) | 319 |
| Bsp143I | GATC | 1 cut(s) | 589 |
| BspACI | CCGC | 4 cut(s) | 184, 229, 362, 557 |
| BspANI | GGCC | 1 cut(s) | 89 |
| BspCNI | CTCAG | 1 cut(s) | 87 |
| BspHI | TCATGA | 1 cut(s) | 64 |
| BspMI | ACCTGC | 1 cut(s) | 607 |
| BspOI | GCTAGC | 1 cut(s) | 606 |
| BspTI | CTTAAG | 1 cut(s) | 385 |
| BspTNI | GGTCTC | 1 cut(s) | 319 |
| BsrBI | CCGCTC | 2 cut(s) | 186, 229 |
| BsrFI | RCCGGY | 3 cut(s) | 364, 505, 523 |
| BsrI | ACTGG | 3 cut(s) | 329, 491, 691 |
| BssAI | RCCGGY | 3 cut(s) | 364, 505, 523 |
| BssECI | CCNNGG | 1 cut(s) | 12 |
| BssMI | GATC | 1 cut(s) | 589 |
| Bst2UI | CCWGG | 2 cut(s) | 206, 561 |
| Bst4CI | ACNGT | 2 cut(s) | 13, 160 |
| Bst6I | CTCTTC | 1 cut(s) | 254 |
| BstAFI | CTTAAG | 1 cut(s) | 385 |
| BstC8I | GCNNGC | 2 cut(s) | 366, 604 |
| BstDEI | CTNAG | 1 cut(s) | 74 |
| BstDSI | CCRYGG | 1 cut(s) | 12 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 670 |
| BstF5I | GGATG | 3 cut(s) | 46, 505, 579 |
| BstKTI | GATC | 1 cut(s) | 592 |
| BstMAI | GTCTC | 1 cut(s) | 319 |
| BstMBI | GATC | 1 cut(s) | 589 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 15, 473, 482, 511, 520 |
| BstNI | CCWGG | 2 cut(s) | 206, 561 |
| BstSCI | CCNGG | 2 cut(s) | 204, 559 |
| BstV1I | GCAGC | 2 cut(s) | 67, 199 |
| BsuRI | GGCC | 1 cut(s) | 89 |
| BtgI | CCRYGG | 1 cut(s) | 12 |
| BtsCI | GGATG | 3 cut(s) | 46, 505, 579 |
| BtsI | GCAGTG | 2 cut(s) | 462, 480 |
| BtsIMutI | CAGTG | 2 cut(s) | 462, 480 |
| BveI | ACCTGC | 1 cut(s) | 607 |
| Cac8I | GCNNGC | 2 cut(s) | 366, 604 |
| CciI | TCATGA | 1 cut(s) | 64 |
| Cfr10I | RCCGGY | 3 cut(s) | 364, 505, 523 |
| Cfr13I | GGNCC | 1 cut(s) | 87 |
| CseI | GACGC | 1 cut(s) | 541 |
| CsiI | ACCWGGT | 1 cut(s) | 204 |
| Csp6I | GTAC | 2 cut(s) | 131, 177 |
| CviAII | CATG | 4 cut(s) | 65, 167, 308, 622 |
| CviQI | GTAC | 2 cut(s) | 131, 177 |
| DdeI | CTNAG | 1 cut(s) | 74 |
| DpnI | GATC | 1 cut(s) | 591 |
| DpnII | GATC | 1 cut(s) | 589 |
| DraIII | CACNNNGTG | 2 cut(s) | 150, 208 |
| Eam1104I | CTCTTC | 1 cut(s) | 254 |
| EarI | CTCTTC | 1 cut(s) | 254 |
| Eco31I | GGTCTC | 1 cut(s) | 319 |
| Eco57I | CTGAAG | 1 cut(s) | 278 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 670 |
| EcoRI | GAATTC | 2 cut(s) | 30, 682 |
| EcoRII | CCWGG | 2 cut(s) | 204, 559 |
| FaeI | CATG | 4 cut(s) | 68, 170, 311, 625 |
| FaiI | YATR | 6 cut(s) | 66, 123, 168, 191, 309, 623 |
| FaqI | GGGAC | 2 cut(s) | 169, 539 |
| FatI | CATG | 4 cut(s) | 64, 166, 307, 621 |
| FauI | CCCGC | 2 cut(s) | 222, 564 |
| FblI | GTMKAC | 1 cut(s) | 45 |
| Fnu4HI | GCNGC | 3 cut(s) | 56, 184, 213 |
| FokI | GGATG | 3 cut(s) | 53, 512, 586 |
| Fsp4HI | GCNGC | 3 cut(s) | 56, 184, 213 |
| FspBI | CTAG | 4 cut(s) | 84, 147, 473, 603 |
| GluI | GCNGC | 3 cut(s) | 56, 184, 213 |
| GsaI | CCCAGC | 1 cut(s) | 449 |
| GsuI | CTGGAG | 2 cut(s) | 474, 674 |
| HaeIII | GGCC | 1 cut(s) | 89 |
| HapII | CCGG | 3 cut(s) | 365, 506, 524 |
| HgaI | GACGC | 1 cut(s) | 541 |
| Hin1II | CATG | 4 cut(s) | 68, 170, 311, 625 |
| HincII | GTYRAC | 2 cut(s) | 240, 615 |
| HindII | GTYRAC | 2 cut(s) | 240, 615 |
| HinfI | GANTC | 5 cut(s) | 78, 114, 125, 194, 539 |
| HpaII | CCGG | 3 cut(s) | 365, 506, 524 |
| HphI | GGTGA | 5 cut(s) | 107, 118, 408, 520, 691 |
| Hpy166II | GTNNAC | 4 cut(s) | 46, 202, 240, 615 |
| Hpy188I | TCNGA | 5 cut(s) | 77, 253, 335, 538, 573 |
| Hpy188III | TCNNGA | 2 cut(s) | 65, 436 |
| Hpy8I | GTNNAC | 4 cut(s) | 46, 202, 240, 615 |
| Hpy99I | CGWCG | 1 cut(s) | 398 |
| HpyAV | CCTTC | 4 cut(s) | 228, 258, 670, 706 |
| HpyCH4III | ACNGT | 2 cut(s) | 13, 160 |
| HpyCH4IV | ACGT | 2 cut(s) | 396, 611 |
| HpyCH4V | TGCA | 6 cut(s) | 9, 144, 317, 467, 529, 629 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 15, 473, 482, 511, 520 |
| HpyF3I | CTNAG | 1 cut(s) | 74 |
| HpySE526I | ACGT | 2 cut(s) | 396, 611 |
| Hsp92II | CATG | 4 cut(s) | 68, 170, 311, 625 |
| KroI | GCCGGC | 1 cut(s) | 364 |
| KroNI | GCCGGC | 1 cut(s) | 366 |
| Kzo9I | GATC | 1 cut(s) | 589 |
| Lsp1109I | GCAGC | 2 cut(s) | 67, 199 |
| LweI | GCATC | 1 cut(s) | 501 |
| MabI | ACCWGGT | 1 cut(s) | 204 |
| MaeI | CTAG | 4 cut(s) | 84, 147, 473, 603 |
| MaeII | ACGT | 2 cut(s) | 396, 611 |
| MaeIII | GTNAC | 1 cut(s) | 637 |
| MalI | GATC | 1 cut(s) | 591 |
| MbiI | CCGCTC | 2 cut(s) | 186, 229 |
| MboI | GATC | 1 cut(s) | 589 |
| MboII | GAAGA | 2 cut(s) | 271, 723 |
| MluCI | AATT | 5 cut(s) | 30, 318, 468, 682, 715 |
| MlyI | GAGTC | 2 cut(s) | 123, 134 |
| MmeI | TCCRAC | 1 cut(s) | 619 |
| MnlI | CCTC | 5 cut(s) | 69, 72, 91, 261, 666 |
| MroNI | GCCGGC | 1 cut(s) | 364 |
| MseI | TTAA | 1 cut(s) | 386 |
| MslI | CAYNNNNRTG | 1 cut(s) | 312 |
| MspCI | CTTAAG | 1 cut(s) | 385 |
| MspI | CCGG | 3 cut(s) | 365, 506, 524 |
| MspR9I | CCNGG | 2 cut(s) | 206, 561 |
| MvaI | CCWGG | 2 cut(s) | 206, 561 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 15, 473, 482, 511, 520 |
| NaeI | GCCGGC | 1 cut(s) | 366 |
| NdeII | GATC | 1 cut(s) | 589 |
| NgoMIV | GCCGGC | 1 cut(s) | 364 |
| NheI | GCTAGC | 1 cut(s) | 602 |
| NlaIII | CATG | 4 cut(s) | 68, 170, 311, 625 |
| NmuCI | GTSAC | 1 cut(s) | 637 |
| PagI | TCATGA | 1 cut(s) | 64 |
| PdiI | GCCGGC | 1 cut(s) | 366 |
| PfeI | GAWTC | 3 cut(s) | 78, 194, 539 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 208 |
| PkrI | GCNGC | 3 cut(s) | 57, 185, 214 |
| PleI | GAGTC | 2 cut(s) | 122, 133 |
| PpsI | GAGTC | 2 cut(s) | 122, 133 |
| Psp6I | CCWGG | 2 cut(s) | 204, 559 |
| PspFI | CCCAGC | 1 cut(s) | 445 |
| PspGI | CCWGG | 2 cut(s) | 204, 559 |
| PspPI | GGNCC | 1 cut(s) | 87 |
| RsaI | GTAC | 2 cut(s) | 132, 178 |
| RsaNI | GTAC | 2 cut(s) | 131, 177 |
| RseI | CAYNNNNRTG | 1 cut(s) | 312 |
| SaqAI | TTAA | 1 cut(s) | 386 |
| SatI | GCNGC | 3 cut(s) | 56, 184, 213 |
| Sau3AI | GATC | 1 cut(s) | 589 |
| Sau96I | GGNCC | 1 cut(s) | 87 |
| SchI | GAGTC | 2 cut(s) | 123, 134 |
| ScrFI | CCNGG | 2 cut(s) | 206, 561 |
| SexAI | ACCWGGT | 1 cut(s) | 204 |
| SfaNI | GCATC | 1 cut(s) | 501 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 312 |
| SmlI | CTYRAG | 1 cut(s) | 385 |
| SmoI | CTYRAG | 1 cut(s) | 385 |
| Sse9I | AATT | 5 cut(s) | 30, 318, 468, 682, 715 |
| SsiI | CCGC | 4 cut(s) | 184, 229, 362, 557 |
| SspMI | CTAG | 4 cut(s) | 84, 147, 473, 603 |
| StyD4I | CCNGG | 2 cut(s) | 204, 559 |
| TaaI | ACNGT | 2 cut(s) | 13, 160 |
| TaiI | ACGT | 2 cut(s) | 399, 614 |
| TaqI | TCGA | 4 cut(s) | 117, 277, 435, 709 |
| TasI | AATT | 5 cut(s) | 30, 318, 468, 682, 715 |
| TauI | GCSGC | 1 cut(s) | 186 |
| TfiI | GAWTC | 3 cut(s) | 78, 194, 539 |
| Tru1I | TTAA | 1 cut(s) | 386 |
| Tru9I | TTAA | 1 cut(s) | 386 |
| TscAI | CASTG | 2 cut(s) | 469, 487 |
| TseFI | GTSAC | 1 cut(s) | 637 |
| TseI | GCWGC | 2 cut(s) | 55, 212 |
| Tsp45I | GTSAC | 1 cut(s) | 637 |
| TspDTI | ATGAA | 2 cut(s) | 17, 155 |
| TspGWI | ACGGA | 1 cut(s) | 596 |
| TspRI | CASTG | 2 cut(s) | 469, 487 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 208 |
| Vha464I | CTTAAG | 1 cut(s) | 385 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 670 |
| XapI | RAATTY | 2 cut(s) | 30, 682 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 34 |
| XmiI | GTMKAC | 1 cut(s) | 45 |
| XspI | CTAG | 4 cut(s) | 84, 147, 473, 603 |