Rmu_sc0001648.1_g000039

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001648.1
OG0000044
Physical Location & Seq
Reverse (-)
234187 .. 235737
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001648.1_g000039.1.cds

Sequence Viewer

Length: 1551 bp
atgcagaatcctttcggcggtcccagggcaaacgcttgcccatggggtttgtcccaaagcgtcagagaggcctctgctcctaagcctcctctcgaagttagaacgtttgcctccatcgtttcagactccgtcgagtcttctatcaacctcaatcaactgacagccccagttgtgcgtggggacaagatctatgtcaagatcaatgagggaatttatcaagagcaactgaagtcttttcgcacaaaccttatcgggagactacttttgaaaaagggttctgttcctttgaaaacaattgaactcaaagcagctctcgacagtttatggaagccctcagggtcctggcgtctggtacctttggggaagggttattttgatattcactttagcactgaagaggacatgcgtcgtatctggggagggggtacttgcactcttgccagtggtatctttcgtctctctgaatggaagcctgacttcaagccaggggatgtcatgccccaaactcatgcacaggtttggattcaaattttgggtttgagccaagactattggcatcctcacctccttatggagattgcccggggtgtgggtactcctctacaacttgaccgggcgacaaaggaacgtcaatttggttactatgctcgtgtcttagttgatgtggatctggctactgatctcccttcttcgattatggttgaacgtgagaacttttgttttccagtggatatttggtatgaaaatctgccagataagtgttcaaattgcggggtcattggtcactccgtgggccgctgcagacatttgcaaaagcaggagcctaagactcgctcccagcatgacaagaataatcaaaaagttgtgcgtcaagagtatagagcggtttcgcgttcttccaataaagaagtaaagcgtaatgtggtcacttctgatattaggcatgatctgcagatggtctatgcttctccatcaaacatgactaatgaaattgttacaaaggatcaacatgccgctccaactctgacagttcatgacgactctcctagggtccaatcttctgaaagagaattggtagaaattgctcagtttgcacaaaccgttattgaagaggcggctttggatgaaatggagactattgcccagcgagtaatagaggagccattggaagcaaatattgacgttgctactgtaaagaaggatgacatgagctcctcggaaacgactaaacaagttcttgaggagcatttttctctggaaaatgcagcaggtgagttgacaaaagggaaaactagtagccatgacttaactgaggaagaccaatgcacaacaagtattgatggaacccctcctagggggcaatttgaaatgcaagcagtgaattctatgatggggggtgatacaggccttaagaatatgacccttgttctttctaaagggcagaaaaagagactccgcaaacagcaaagagaggaaaagcagccaggaaagagcactgtggatcgttaccctgcaagaaataggggtcctcctcataagcttaatttatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

516

Amino Acids

58.02

Weight (kDa)

7.21

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1259
Acc36I ACCTGC 1 cut(s) 1259
Acc65I GGTACC 1 cut(s) 352
AccB1I GGYRCC 1 cut(s) 352
AccBSI CCGCTC 2 cut(s) 884, 1016
AccII CGCG 1 cut(s) 892
AciI CCGC 7 cut(s) 18, 771, 796, 884, 1014, 1115, 1456
AclI AACGTT 1 cut(s) 104
AclWI GGATC 3 cut(s) 675, 1011, 1509
AcsI RAATTY 3 cut(s) 210, 528, 1381
AcuI CTGAAG 2 cut(s) 248, 414
AcyI GRCGYC 1 cut(s) 346
AdeI CACNNNGTG 1 cut(s) 790
AfaI GTAC 3 cut(s) 354, 427, 595
AfiI CCNNNNNNNGG 6 cut(s) 17, 571, 589, 1353, 1354, 1355
AflII CTTAAG 1 cut(s) 1409
AgsI TTSAA 9 cut(s) 268, 289, 299, 481, 527, 704, 765, 1109, 1367
AhlI ACTAGT 1 cut(s) 1292
AjnI CCWGG 4 cut(s) 23, 341, 484, 1483
AjuI GAANNNNNNNTTGG 2 cut(s) 618, 650
AluBI AGCT 3 cut(s) 311, 1212, 1540
AluI AGCT 3 cut(s) 311, 1212, 1540
Alw21I GWGCWC 2 cut(s) 1214, 1496
Alw26I GTCTC 4 cut(s) 250, 461, 1127, 1444
AlwI GGATC 3 cut(s) 675, 1011, 1509
Ama87I CYCGRG 1 cut(s) 582
AoxI GGCC 3 cut(s) 69, 793, 1405
ApeKI GCWGC 4 cut(s) 308, 798, 1265, 1480
ApoI RAATTY 3 cut(s) 210, 528, 1381
Asp700I GAANNNNTTC 1 cut(s) 11
Asp718I GGTACC 1 cut(s) 352
AspA2I CCTAGG 2 cut(s) 1046, 1352
AspS9I GGNCC 5 cut(s) 20, 339, 793, 1051, 1526
AsuC2I CCSGG 3 cut(s) 583, 584, 614
AsuHPI GGTGA 3 cut(s) 554, 1283, 1409
AvaI CYCGRG 1 cut(s) 582
AvaII GGWCC 4 cut(s) 20, 339, 1051, 1526
AvrII CCTAGG 2 cut(s) 1046, 1352
AxyI CCTNAGG 1 cut(s) 334
BanI GGYRCC 1 cut(s) 352
BanII GRGCYC 1 cut(s) 1214
BauI CACGAG 1 cut(s) 648
BbsI GAAGAC 2 cut(s) 129, 1323
Bbv12I GWGCWC 2 cut(s) 1214, 1496
BbvI GCAGC 4 cut(s) 320, 785, 1277, 1492
BccI CCATC 5 cut(s) 122, 949, 979, 1334, 1384
BciT130I CCWGG 4 cut(s) 25, 343, 486, 1485
BcnI CCSGG 3 cut(s) 583, 584, 614
BcoDI GTCTC 4 cut(s) 250, 461, 1127, 1444
BcuI ACTAGT 1 cut(s) 1292
BfaI CTAG 3 cut(s) 1047, 1293, 1353
BfmI CTRYAG 2 cut(s) 799, 950
BfrI CTTAAG 1 cut(s) 1409
BfuAI ACCTGC 1 cut(s) 1259
BglII AGATCT 1 cut(s) 186
BisI GCNGC 7 cut(s) 309, 796, 799, 1014, 1116, 1266, 1481
BlnI CCTAGG 2 cut(s) 1046, 1352
BlsI GCNGC 7 cut(s) 310, 797, 800, 1015, 1117, 1267, 1482
Bme1390I CCNGG 7 cut(s) 25, 343, 486, 583, 584, 614, 1485
Bme18I GGWCC 4 cut(s) 20, 339, 1051, 1526
BmeT110I CYCGRG 1 cut(s) 582
BmgT120I GGNCC 5 cut(s) 20, 339, 793, 1051, 1526
BmiI GGNNCC 8 cut(s) 22, 340, 354, 822, 1052, 1161, 1345, 1527
BmrFI CCNGG 7 cut(s) 25, 343, 486, 583, 584, 614, 1485
BmrI ACTGGG 1 cut(s) 161
BmsI GCATC 1 cut(s) 565
BmuI ACTGGG 1 cut(s) 161
BoxI GACNNNNGTC 1 cut(s) 405
BpiI GAAGAC 2 cut(s) 129, 1323
Bpu10I CCTNAGC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 1259
BpuMI CCSGG 3 cut(s) 583, 584, 614
BsaBI GATNNNNATC 1 cut(s) 666
BsaHI GRCGYC 1 cut(s) 346
BsaXI ACNNNNNCTCC 2 cut(s) 1196, 1226
Bsc4I CCNNNNNNNGG 6 cut(s) 17, 571, 589, 1353, 1354, 1355
Bse1I ACTGG 3 cut(s) 167, 441, 725
Bse21I CCTNAGG 1 cut(s) 334
Bse8I GATNNNNATC 1 cut(s) 666
BseBI CCWGG 4 cut(s) 25, 343, 486, 1485
BseGI GGATG 4 cut(s) 496, 556, 1129, 1207
BseJI GATNNNNATC 1 cut(s) 666
BseLI CCNNNNNNNGG 6 cut(s) 17, 571, 589, 1353, 1354, 1355
BseMII CTCAG 3 cut(s) 348, 1100, 1302
BseNI ACTGG 3 cut(s) 167, 441, 725
BseRI GAGGAG 6 cut(s) 78, 588, 1172, 1204, 1256, 1521
BseXI GCAGC 4 cut(s) 320, 785, 1277, 1492
BseYI CCCAGC 2 cut(s) 837, 1143
Bsh1236I CGCG 1 cut(s) 892
BshFI GGCC 3 cut(s) 71, 795, 1407
BshNI GGYRCC 1 cut(s) 352
BsiHKAI GWGCWC 2 cut(s) 1214, 1496
BsiHKCI CYCGRG 1 cut(s) 582
BsiSI CCGG 2 cut(s) 583, 613
BslFI GGGAC 3 cut(s) 6, 37, 194
BslI CCNNNNNNNGG 6 cut(s) 17, 571, 589, 1353, 1354, 1355
BsmAI GTCTC 4 cut(s) 250, 461, 1127, 1444
BsmBI CGTCTC 1 cut(s) 461
BsmFI GGGAC 3 cut(s) 6, 37, 194
BsnI GGCC 3 cut(s) 71, 795, 1407
BsoBI CYCGRG 1 cut(s) 582
Bsp1286I GDGCHC 2 cut(s) 1214, 1496
Bsp143I GATC 7 cut(s) 186, 198, 667, 679, 946, 1003, 1501
Bsp19I CCATGG 1 cut(s) 41
BspACI CCGC 7 cut(s) 18, 771, 796, 884, 1014, 1115, 1456
BspANI GGCC 3 cut(s) 71, 795, 1407
BspCNI CTCAG 3 cut(s) 347, 1099, 1303
BspFNI CGCG 1 cut(s) 892
BspHI TCATGA 1 cut(s) 1033
BspLI GGNNCC 8 cut(s) 22, 340, 354, 822, 1052, 1161, 1345, 1527
BspMAI CTGCAG 2 cut(s) 803, 954
BspMI ACCTGC 1 cut(s) 1259
BspPI GGATC 3 cut(s) 675, 1011, 1509
BspT107I GGYRCC 1 cut(s) 352
BspTI CTTAAG 1 cut(s) 1409
BsrBI CCGCTC 2 cut(s) 884, 1016
BsrI ACTGG 3 cut(s) 167, 441, 725
BssMI GATC 7 cut(s) 186, 198, 667, 679, 946, 1003, 1501
BssNI GRCGYC 1 cut(s) 346
BssSI CACGAG 1 cut(s) 648
BssT1I CCWWGG 3 cut(s) 41, 1046, 1352
Bst2BI CACGAG 1 cut(s) 648
Bst2UI CCWGG 4 cut(s) 25, 343, 486, 1485
Bst4CI ACNGT 5 cut(s) 320, 1030, 1102, 1192, 1498
Bst6I CTCTTC 2 cut(s) 390, 1104
BstACI GRCGYC 1 cut(s) 346
BstAFI CTTAAG 1 cut(s) 1409
BstAPI GCANNNNNTGC 1 cut(s) 949
BstC8I GCNNGC 2 cut(s) 37, 1374
BstDEI CTNAG 6 cut(s) 81, 334, 655, 825, 1086, 1311
BstDSI CCRYGG 2 cut(s) 41, 789
BstF5I GGATG 4 cut(s) 496, 556, 1129, 1207
BstFNI CGCG 1 cut(s) 892
BstKTI GATC 7 cut(s) 189, 201, 670, 682, 949, 1006, 1504
BstMAI GTCTC 4 cut(s) 250, 461, 1127, 1444
BstMBI GATC 7 cut(s) 186, 198, 667, 679, 946, 1003, 1501
BstMWI GCNNNNNNNGC 2 cut(s) 949, 1091
BstNI CCWGG 4 cut(s) 25, 343, 486, 1485
BstNSI RCATGY 2 cut(s) 406, 1013
BstPAI GACNNNNGTC 1 cut(s) 405
BstSCI CCNGG 7 cut(s) 23, 341, 484, 581, 582, 612, 1483
BstSFI CTRYAG 2 cut(s) 799, 950
BstUI CGCG 1 cut(s) 892
BstV1I GCAGC 4 cut(s) 320, 785, 1277, 1492
BstV2I GAAGAC 2 cut(s) 129, 1323
BstX2I RGATCY 2 cut(s) 186, 667
BstYI RGATCY 2 cut(s) 186, 667
Bsu36I CCTNAGG 1 cut(s) 334
BsuRI GGCC 3 cut(s) 71, 795, 1407
BtgI CCRYGG 2 cut(s) 41, 789
BtsCI GGATG 4 cut(s) 496, 556, 1129, 1207
BtsI GCAGTG 1 cut(s) 1383
BtsIMutI CAGTG 5 cut(s) 390, 448, 732, 1383, 1494
BveI ACCTGC 1 cut(s) 1259
Cac8I GCNNGC 2 cut(s) 37, 1374
CciI TCATGA 1 cut(s) 1033
Cfr13I GGNCC 5 cut(s) 20, 339, 793, 1051, 1526
Cfr9I CCCGGG 1 cut(s) 582
CseI GACGC 4 cut(s) 49, 335, 395, 857
Csp6I GTAC 3 cut(s) 353, 426, 594
CviQI GTAC 3 cut(s) 353, 426, 594
DdeI CTNAG 6 cut(s) 81, 334, 655, 825, 1086, 1311
DpnI GATC 7 cut(s) 188, 200, 669, 681, 948, 1005, 1503
DpnII GATC 7 cut(s) 186, 198, 667, 679, 946, 1003, 1501
DraIII CACNNNGTG 1 cut(s) 790
Eam1104I CTCTTC 2 cut(s) 390, 1104
EarI CTCTTC 2 cut(s) 390, 1104
Ecl136II GAGCTC 1 cut(s) 1212
Eco130I CCWWGG 3 cut(s) 41, 1046, 1352
Eco147I AGGCCT 2 cut(s) 71, 1407
Eco24I GRGCYC 1 cut(s) 1214
Eco47I GGWCC 4 cut(s) 20, 339, 1051, 1526
Eco53kI GAGCTC 1 cut(s) 1212
Eco57I CTGAAG 2 cut(s) 248, 414
Eco81I CCTNAGG 1 cut(s) 334
Eco88I CYCGRG 1 cut(s) 582
EcoICRI GAGCTC 1 cut(s) 1212
EcoO109I RGGNCCY 2 cut(s) 339, 1526
EcoRI GAATTC 1 cut(s) 1381
EcoRII CCWGG 4 cut(s) 23, 341, 484, 1483
EcoT14I CCWWGG 3 cut(s) 41, 1046, 1352
EcoT38I GRGCYC 1 cut(s) 1214
ErhI CCWWGG 3 cut(s) 41, 1046, 1352
Esp3I CGTCTC 1 cut(s) 461
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FaqI GGGAC 3 cut(s) 6, 37, 194
FauI CCCGC 1 cut(s) 764
Fnu4HI GCNGC 7 cut(s) 309, 796, 799, 1014, 1116, 1266, 1481
FokI GGATG 4 cut(s) 503, 543, 1136, 1214
FriOI GRGCYC 1 cut(s) 1214
Fsp4HI GCNGC 7 cut(s) 309, 796, 799, 1014, 1116, 1266, 1481
FspBI CTAG 3 cut(s) 1047, 1293, 1353
GluI GCNGC 7 cut(s) 309, 796, 799, 1014, 1116, 1266, 1481
GsaI CCCAGC 2 cut(s) 841, 1147
HaeIII GGCC 3 cut(s) 71, 795, 1407
HapII CCGG 2 cut(s) 583, 613
HgaI GACGC 4 cut(s) 49, 335, 395, 857
Hin1I GRCGYC 1 cut(s) 346
HincII GTYRAC 1 cut(s) 1278
HindII GTYRAC 1 cut(s) 1278
HindIII AAGCTT 1 cut(s) 1538
HinfI GANTC 7 cut(s) 7, 125, 134, 523, 829, 1040, 1452
HpaII CCGG 2 cut(s) 583, 613
HphI GGTGA 3 cut(s) 554, 1283, 1409
Hpy166II GTNNAC 1 cut(s) 1278
Hpy188I TCNGA 7 cut(s) 65, 124, 463, 934, 1026, 1063, 1219
Hpy188III TCNNGA 9 cut(s) 92, 196, 218, 253, 314, 872, 1034, 1238, 1256
Hpy8I GTNNAC 1 cut(s) 1278
Hpy99I CGWCG 2 cut(s) 134, 411
HpyAV CCTTC 3 cut(s) 358, 696, 1192
HpyCH4III ACNGT 5 cut(s) 320, 1030, 1102, 1192, 1498
HpyCH4IV ACGT 4 cut(s) 104, 628, 706, 1182
HpyF10VI GCNNNNNNNGC 2 cut(s) 949, 1091
HpyF3I CTNAG 6 cut(s) 81, 334, 655, 825, 1086, 1311
HpySE526I ACGT 4 cut(s) 104, 628, 706, 1182
Hsp92I GRCGYC 1 cut(s) 346
KpnI GGTACC 1 cut(s) 356
Kzo9I GATC 7 cut(s) 186, 198, 667, 679, 946, 1003, 1501
LmnI GCTCC 7 cut(s) 82, 820, 839, 1021, 1159, 1217, 1243
Lsp1109I GCAGC 4 cut(s) 320, 785, 1277, 1492
LweI GCATC 1 cut(s) 565
MaeI CTAG 3 cut(s) 1047, 1293, 1353
MaeII ACGT 4 cut(s) 104, 628, 706, 1182
MaeIII GTNAC 5 cut(s) 638, 782, 925, 994, 1505
MalI GATC 7 cut(s) 188, 200, 669, 681, 948, 1005, 1503
MbiI CCGCTC 2 cut(s) 884, 1016
MboI GATC 7 cut(s) 186, 198, 667, 679, 946, 1003, 1501
MboII GAAGA 7 cut(s) 129, 407, 681, 888, 1050, 1121, 1328
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 2 cut(s) 186, 667
MhlI GDGCHC 2 cut(s) 1214, 1496
MlyI GAGTC 5 cut(s) 119, 143, 823, 1034, 1446
MmeI TCCRAC 1 cut(s) 1043
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 3 cut(s) 1307, 1410, 1542
MspA1I CMGCKG 1 cut(s) 798
MspCI CTTAAG 1 cut(s) 1409
MspI CCGG 2 cut(s) 583, 613
MspR9I CCNGG 7 cut(s) 25, 343, 486, 583, 584, 614, 1485
MunI CAATTG 1 cut(s) 294
MvaI CCWGG 4 cut(s) 25, 343, 486, 1485
MvnI CGCG 1 cut(s) 892
MwoI GCNNNNNNNGC 2 cut(s) 949, 1091
NciI CCSGG 3 cut(s) 583, 584, 614
NcoI CCATGG 1 cut(s) 41
NdeII GATC 7 cut(s) 186, 198, 667, 679, 946, 1003, 1501
NlaIV GGNNCC 8 cut(s) 22, 340, 354, 822, 1052, 1161, 1345, 1527
NmuCI GTSAC 2 cut(s) 782, 925
NspI RCATGY 2 cut(s) 406, 1013
PagI TCATGA 1 cut(s) 1033
PaqCI CACCTGC 1 cut(s) 1259
PasI CCCWGGG 1 cut(s) 24
PceI AGGCCT 2 cut(s) 71, 1407
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 2 cut(s) 7, 523
PflFI GACNNNGTC 1 cut(s) 128
PkrI GCNGC 7 cut(s) 310, 797, 800, 1015, 1117, 1267, 1482
PleI GAGTC 5 cut(s) 119, 142, 823, 1034, 1446
PpsI GAGTC 5 cut(s) 119, 142, 823, 1034, 1446
PpuMI RGGWCCY 2 cut(s) 339, 1526
PshAI GACNNNNGTC 1 cut(s) 405
Psp124BI GAGCTC 1 cut(s) 1214
Psp1406I AACGTT 1 cut(s) 104
Psp5II RGGWCCY 2 cut(s) 339, 1526
Psp6I CCWGG 4 cut(s) 23, 341, 484, 1483
PspFI CCCAGC 2 cut(s) 837, 1143
PspGI CCWGG 4 cut(s) 23, 341, 484, 1483
PspN4I GGNNCC 8 cut(s) 22, 340, 354, 822, 1052, 1161, 1345, 1527
PspPI GGNCC 5 cut(s) 20, 339, 793, 1051, 1526
PspPPI RGGWCCY 2 cut(s) 339, 1526
PstI CTGCAG 2 cut(s) 803, 954
PsuI RGATCY 2 cut(s) 186, 667
PsyI GACNNNGTC 1 cut(s) 128
RsaI GTAC 3 cut(s) 354, 427, 595
RsaNI GTAC 3 cut(s) 353, 426, 594
SacI GAGCTC 1 cut(s) 1214
SaqAI TTAA 3 cut(s) 1307, 1410, 1542
SatI GCNGC 7 cut(s) 309, 796, 799, 1014, 1116, 1266, 1481
Sau3AI GATC 7 cut(s) 186, 198, 667, 679, 946, 1003, 1501
Sau96I GGNCC 5 cut(s) 20, 339, 793, 1051, 1526
SchI GAGTC 5 cut(s) 119, 143, 823, 1034, 1446
ScrFI CCNGG 7 cut(s) 25, 343, 486, 583, 584, 614, 1485
SduI GDGCHC 2 cut(s) 1214, 1496
SfaNI GCATC 1 cut(s) 565
SfcI CTRYAG 2 cut(s) 799, 950
SinI GGWCC 4 cut(s) 20, 339, 1051, 1526
SmaI CCCGGG 1 cut(s) 584
SmlI CTYRAG 2 cut(s) 1238, 1409
SmoI CTYRAG 2 cut(s) 1238, 1409
SpeI ACTAGT 1 cut(s) 1292
SseBI AGGCCT 2 cut(s) 71, 1407
SsiI CCGC 7 cut(s) 18, 771, 796, 884, 1014, 1115, 1456
SspI AATATT 1 cut(s) 1177
SspMI CTAG 3 cut(s) 1047, 1293, 1353
SstI GAGCTC 1 cut(s) 1214
StuI AGGCCT 2 cut(s) 71, 1407
StyD4I CCNGG 7 cut(s) 23, 341, 484, 581, 582, 612, 1483
StyI CCWWGG 3 cut(s) 41, 1046, 1352
TaaI ACNGT 5 cut(s) 320, 1030, 1102, 1192, 1498
TaiI ACGT 4 cut(s) 107, 631, 709, 1185
TaqI TCGA 4 cut(s) 93, 132, 315, 692
TauI GCSGC 3 cut(s) 798, 1016, 1118
TfiI GAWTC 2 cut(s) 7, 523
Tru1I TTAA 3 cut(s) 1307, 1410, 1542
Tru9I TTAA 3 cut(s) 1307, 1410, 1542
TscAI CASTG 5 cut(s) 397, 448, 732, 1383, 1501
TseFI GTSAC 2 cut(s) 782, 925
TseI GCWGC 4 cut(s) 308, 798, 1265, 1480
Tsp45I GTSAC 2 cut(s) 782, 925
TspDTI ATGAA 4 cut(s) 756, 1002, 1022, 1140
TspGWI ACGGA 2 cut(s) 118, 778
TspMI CCCGGG 1 cut(s) 582
TspRI CASTG 5 cut(s) 397, 448, 732, 1383, 1501
Tth111I GACNNNGTC 1 cut(s) 128
Vha464I CTTAAG 1 cut(s) 1409
VpaK11BI GGWCC 4 cut(s) 20, 339, 1051, 1526
XapI RAATTY 3 cut(s) 210, 528, 1381
XceI RCATGY 2 cut(s) 406, 1013
XcmI CCANNNNNNNNNTGG 1 cut(s) 732
XmaI CCCGGG 1 cut(s) 582
XmaJI CCTAGG 2 cut(s) 1046, 1352
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 3 cut(s) 1047, 1293, 1353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.