Reverse transcriptase (RNA-dependent DNA polymerase)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 168 |
| AccB1I | GGYRCC | 2 cut(s) | 168, 1598 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 806 |
| AccII | CGCG | 3 cut(s) | 74, 89, 1992 |
| AccIII | TCCGGA | 1 cut(s) | 1331 |
| AciI | CCGC | 9 cut(s) | 80, 87, 766, 817, 835, 965, 1884, 1992, 2089 |
| AclWI | GGATC | 6 cut(s) | 388, 495, 626, 1342, 2070, 2109 |
| AcoI | YGGCCR | 1 cut(s) | 14 |
| AcsI | RAATTY | 4 cut(s) | 584, 1444, 1515, 2132 |
| AcuI | CTGAAG | 2 cut(s) | 558, 1302 |
| AcyI | GRCGYC | 2 cut(s) | 425, 829 |
| AfaI | GTAC | 5 cut(s) | 49, 71, 170, 326, 1983 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 268, 806 |
| AflII | CTTAAG | 1 cut(s) | 392 |
| AflIII | ACRYGT | 2 cut(s) | 72, 1150 |
| AgsI | TTSAA | 5 cut(s) | 337, 363, 527, 1486, 1919 |
| AjnI | CCWGG | 4 cut(s) | 397, 1578, 2019, 2057 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 188, 220 |
| AleI | CACNNNNGTG | 1 cut(s) | 981 |
| Alw21I | GWGCWC | 1 cut(s) | 1189 |
| Alw26I | GTCTC | 3 cut(s) | 665, 773, 2036 |
| AlwI | GGATC | 6 cut(s) | 388, 495, 626, 1342, 2070, 2109 |
| Aor13HI | TCCGGA | 1 cut(s) | 1331 |
| AoxI | GGCC | 3 cut(s) | 14, 1248, 2140 |
| ApeKI | GCWGC | 3 cut(s) | 1049, 1223, 1343 |
| ApoI | RAATTY | 4 cut(s) | 584, 1444, 1515, 2132 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 702 |
| Asp718I | GGTACC | 1 cut(s) | 168 |
| AspLEI | GCGC | 4 cut(s) | 58, 91, 1992, 2019 |
| AspS9I | GGNCC | 4 cut(s) | 932, 1126, 1823, 1886 |
| AsuC2I | CCSGG | 2 cut(s) | 440, 775 |
| AsuII | TTCGAA | 1 cut(s) | 2166 |
| AsuNHI | GCTAGC | 1 cut(s) | 2036 |
| AvaII | GGWCC | 4 cut(s) | 932, 1126, 1823, 1886 |
| BanI | GGYRCC | 2 cut(s) | 168, 1598 |
| BanII | GRGCYC | 1 cut(s) | 1189 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 317, 349 |
| BauI | CACGAG | 1 cut(s) | 639 |
| BbsI | GAAGAC | 2 cut(s) | 146, 776 |
| Bbv12I | GWGCWC | 1 cut(s) | 1189 |
| BbvI | GCAGC | 3 cut(s) | 1036, 1210, 1355 |
| BccI | CCATC | 8 cut(s) | 35, 128, 225, 256, 307, 917, 943, 1175 |
| BceAI | ACGGC | 1 cut(s) | 29 |
| BciT130I | CCWGG | 4 cut(s) | 399, 1580, 2021, 2059 |
| BciVI | GTATCC | 1 cut(s) | 1708 |
| BclI | TGATCA | 3 cut(s) | 562, 997, 1687 |
| BcnI | CCSGG | 2 cut(s) | 440, 775 |
| BcoDI | GTCTC | 3 cut(s) | 665, 773, 2036 |
| BfaI | CTAG | 6 cut(s) | 63, 221, 491, 608, 1338, 2037 |
| BfrI | CTTAAG | 1 cut(s) | 392 |
| BfuI | GTATCC | 1 cut(s) | 1708 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 350 |
| BglII | AGATCT | 1 cut(s) | 1431 |
| BisI | GCNGC | 5 cut(s) | 87, 836, 1050, 1224, 1344 |
| BlsI | GCNGC | 5 cut(s) | 88, 837, 1051, 1225, 1345 |
| Bme1390I | CCNGG | 6 cut(s) | 399, 440, 775, 1580, 2021, 2059 |
| Bme18I | GGWCC | 4 cut(s) | 932, 1126, 1823, 1886 |
| BmgT120I | GGNCC | 4 cut(s) | 932, 1126, 1823, 1886 |
| BmiI | GGNNCC | 5 cut(s) | 170, 510, 549, 798, 1600 |
| BmrFI | CCNGG | 6 cut(s) | 399, 440, 775, 1580, 2021, 2059 |
| BmsI | GCATC | 3 cut(s) | 1000, 1087, 2044 |
| BmtI | GCTAGC | 1 cut(s) | 2040 |
| BoxI | GACNNNNGTC | 1 cut(s) | 146 |
| BpiI | GAAGAC | 2 cut(s) | 146, 776 |
| BpmI | CTGGAG | 1 cut(s) | 91 |
| Bpu10I | CCTNAGC | 1 cut(s) | 465 |
| Bpu14I | TTCGAA | 1 cut(s) | 2166 |
| BpuEI | CTTGAG | 2 cut(s) | 518, 900 |
| BpuMI | CCSGG | 2 cut(s) | 440, 775 |
| BsaAI | YACGTR | 1 cut(s) | 1985 |
| BsaBI | GATNNNNATC | 1 cut(s) | 101 |
| BsaHI | GRCGYC | 2 cut(s) | 425, 829 |
| BsaWI | WCCGGW | 3 cut(s) | 550, 1331, 2159 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 43, 73, 677, 707, 1313, 1343 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 268, 806 |
| Bse1I | ACTGG | 5 cut(s) | 92, 108, 800, 863, 1889 |
| Bse3DI | GCAATG | 1 cut(s) | 425 |
| Bse8I | GATNNNNATC | 1 cut(s) | 101 |
| BseAI | TCCGGA | 1 cut(s) | 1331 |
| BseBI | CCWGG | 4 cut(s) | 399, 1580, 2021, 2059 |
| BseGI | GGATG | 3 cut(s) | 1015, 1078, 2059 |
| BseJI | GATNNNNATC | 1 cut(s) | 101 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 268, 806 |
| BseMI | GCAATG | 1 cut(s) | 425 |
| BseMII | CTCAG | 3 cut(s) | 171, 360, 479 |
| BseNI | ACTGG | 5 cut(s) | 92, 108, 800, 863, 1889 |
| BseRI | GAGGAG | 4 cut(s) | 627, 1284, 1342, 1925 |
| BseX3I | CGGCCG | 1 cut(s) | 14 |
| BseXI | GCAGC | 3 cut(s) | 1036, 1210, 1355 |
| BsgI | GTGCAG | 4 cut(s) | 211, 1035, 1399, 1986 |
| Bsh1236I | CGCG | 3 cut(s) | 74, 89, 1992 |
| Bsh1285I | CGRYCG | 2 cut(s) | 17, 84 |
| BshFI | GGCC | 3 cut(s) | 16, 1250, 2142 |
| BshNI | GGYRCC | 2 cut(s) | 168, 1598 |
| BsiEI | CGRYCG | 2 cut(s) | 17, 84 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1189 |
| BsiSI | CCGG | 6 cut(s) | 440, 551, 774, 794, 1332, 2160 |
| BsiWI | CGTACG | 1 cut(s) | 69 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 268, 806 |
| BsmAI | GTCTC | 3 cut(s) | 665, 773, 2036 |
| BsnI | GGCC | 3 cut(s) | 16, 1250, 2142 |
| Bsp119I | TTCGAA | 1 cut(s) | 2166 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1189 |
| Bsp13I | TCCGGA | 1 cut(s) | 1331 |
| Bsp1407I | TGTACA | 1 cut(s) | 47 |
| Bsp19I | CCATGG | 2 cut(s) | 26, 1826 |
| BspACI | CCGC | 9 cut(s) | 80, 87, 766, 817, 835, 965, 1884, 1992, 2089 |
| BspANI | GGCC | 3 cut(s) | 16, 1250, 2142 |
| BspCNI | CTCAG | 3 cut(s) | 170, 359, 478 |
| BspEI | TCCGGA | 1 cut(s) | 1331 |
| BspFNI | CGCG | 3 cut(s) | 74, 89, 1992 |
| BspHI | TCATGA | 1 cut(s) | 130 |
| BspLI | GGNNCC | 5 cut(s) | 170, 510, 549, 798, 1600 |
| BspOI | GCTAGC | 1 cut(s) | 2040 |
| BspPI | GGATC | 6 cut(s) | 388, 495, 626, 1342, 2070, 2109 |
| BspT104I | TTCGAA | 1 cut(s) | 2166 |
| BspT107I | GGYRCC | 2 cut(s) | 168, 1598 |
| BspTI | CTTAAG | 1 cut(s) | 392 |
| BsrDI | GCAATG | 1 cut(s) | 425 |
| BsrGI | TGTACA | 1 cut(s) | 47 |
| BsrI | ACTGG | 5 cut(s) | 92, 108, 800, 863, 1889 |
| BssNI | GRCGYC | 2 cut(s) | 425, 829 |
| BssSI | CACGAG | 1 cut(s) | 639 |
| BssT1I | CCWWGG | 2 cut(s) | 26, 1826 |
| Bst2BI | CACGAG | 1 cut(s) | 639 |
| Bst2UI | CCWGG | 4 cut(s) | 399, 1580, 2021, 2059 |
| Bst4CI | ACNGT | 6 cut(s) | 148, 676, 983, 1370, 1730, 1762 |
| BstACI | GRCGYC | 2 cut(s) | 425, 829 |
| BstAFI | CTTAAG | 1 cut(s) | 392 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1748 |
| BstAUI | TGTACA | 1 cut(s) | 47 |
| BstBAI | YACGTR | 1 cut(s) | 1985 |
| BstBI | TTCGAA | 1 cut(s) | 2166 |
| BstC8I | GCNNGC | 8 cut(s) | 821, 946, 963, 1134, 1206, 1586, 1753, 2038 |
| BstDEI | CTNAG | 3 cut(s) | 157, 346, 465 |
| BstDSI | CCRYGG | 4 cut(s) | 26, 805, 1661, 1826 |
| BstF5I | GGATG | 3 cut(s) | 1015, 1078, 2059 |
| BstFNI | CGCG | 3 cut(s) | 74, 89, 1992 |
| BstHHI | GCGC | 4 cut(s) | 58, 91, 1992, 2019 |
| BstMAI | GTCTC | 3 cut(s) | 665, 773, 2036 |
| BstMCI | CGRYCG | 2 cut(s) | 17, 84 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 86, 350, 415, 424, 835, 1748, 1864 |
| BstNI | CCWGG | 4 cut(s) | 399, 1580, 2021, 2059 |
| BstNSI | RCATGY | 4 cut(s) | 202, 756, 1154, 1588 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 146 |
| BstSCI | CCNGG | 6 cut(s) | 397, 438, 773, 1578, 2019, 2057 |
| BstSNI | TACGTA | 1 cut(s) | 1985 |
| BstUI | CGCG | 3 cut(s) | 74, 89, 1992 |
| BstV1I | GCAGC | 3 cut(s) | 1036, 1210, 1355 |
| BstV2I | GAAGAC | 2 cut(s) | 146, 776 |
| BstX2I | RGATCY | 3 cut(s) | 487, 1334, 1431 |
| BstYI | RGATCY | 3 cut(s) | 487, 1334, 1431 |
| BstZI | CGGCCG | 1 cut(s) | 14 |
| BsuI | GTATCC | 1 cut(s) | 1708 |
| BsuRI | GGCC | 3 cut(s) | 16, 1250, 2142 |
| BtgI | CCRYGG | 4 cut(s) | 26, 805, 1661, 1826 |
| BtsCI | GGATG | 3 cut(s) | 1015, 1078, 2059 |
| BtsI | GCAGTG | 1 cut(s) | 1860 |
| BtsIMutI | CAGTG | 3 cut(s) | 99, 1794, 1860 |
| Cac8I | GCNNGC | 8 cut(s) | 821, 946, 963, 1134, 1206, 1586, 1753, 2038 |
| CciI | TCATGA | 1 cut(s) | 130 |
| CfoI | GCGC | 4 cut(s) | 58, 91, 1992, 2019 |
| Cfr13I | GGNCC | 4 cut(s) | 932, 1126, 1823, 1886 |
| CseI | GACGC | 4 cut(s) | 63, 213, 433, 818 |
| Csp6I | GTAC | 5 cut(s) | 48, 70, 169, 325, 1982 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1591, 1626 |
| CviQI | GTAC | 5 cut(s) | 48, 70, 169, 325, 1982 |
| DdeI | CTNAG | 3 cut(s) | 157, 346, 465 |
| EaeI | YGGCCR | 1 cut(s) | 14 |
| EagI | CGGCCG | 1 cut(s) | 14 |
| Ecl136II | GAGCTC | 1 cut(s) | 1187 |
| EclXI | CGGCCG | 1 cut(s) | 14 |
| Eco105I | TACGTA | 1 cut(s) | 1985 |
| Eco130I | CCWWGG | 2 cut(s) | 26, 1826 |
| Eco24I | GRGCYC | 1 cut(s) | 1189 |
| Eco32I | GATATC | 1 cut(s) | 1792 |
| Eco47I | GGWCC | 4 cut(s) | 932, 1126, 1823, 1886 |
| Eco52I | CGGCCG | 1 cut(s) | 14 |
| Eco53kI | GAGCTC | 1 cut(s) | 1187 |
| Eco57I | CTGAAG | 2 cut(s) | 558, 1302 |
| EcoICRI | GAGCTC | 1 cut(s) | 1187 |
| EcoRII | CCWGG | 4 cut(s) | 397, 1578, 2019, 2057 |
| EcoRV | GATATC | 1 cut(s) | 1792 |
| EcoT14I | CCWWGG | 2 cut(s) | 26, 1826 |
| EcoT22I | ATGCAT | 1 cut(s) | 1869 |
| EcoT38I | GRGCYC | 1 cut(s) | 1189 |
| ErhI | CCWWGG | 2 cut(s) | 26, 1826 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1038, 1070, 1796, 1828 |
| FauI | CCCGC | 2 cut(s) | 824, 2096 |
| FauNDI | CATATG | 3 cut(s) | 628, 741, 990 |
| FbaI | TGATCA | 3 cut(s) | 562, 997, 1687 |
| Fnu4HI | GCNGC | 5 cut(s) | 87, 836, 1050, 1224, 1344 |
| FokI | GGATG | 3 cut(s) | 1022, 1065, 2066 |
| FriOI | GRGCYC | 1 cut(s) | 1189 |
| Fsp4HI | GCNGC | 5 cut(s) | 87, 836, 1050, 1224, 1344 |
| FspBI | CTAG | 6 cut(s) | 63, 221, 491, 608, 1338, 2037 |
| GlaI | GCGC | 4 cut(s) | 57, 90, 1991, 2018 |
| GluI | GCNGC | 5 cut(s) | 87, 836, 1050, 1224, 1344 |
| GsuI | CTGGAG | 1 cut(s) | 91 |
| HaeIII | GGCC | 3 cut(s) | 16, 1250, 2142 |
| HapII | CCGG | 6 cut(s) | 440, 551, 774, 794, 1332, 2160 |
| HgaI | GACGC | 4 cut(s) | 63, 213, 433, 818 |
| HhaI | GCGC | 4 cut(s) | 58, 91, 1992, 2019 |
| Hin1I | GRCGYC | 2 cut(s) | 425, 829 |
| Hin6I | GCGC | 4 cut(s) | 56, 89, 1990, 2017 |
| HinP1I | GCGC | 4 cut(s) | 56, 89, 1990, 2017 |
| HinfI | GANTC | 9 cut(s) | 97, 127, 303, 478, 1213, 1322, 1385, 1550, 1718 |
| HpaII | CCGG | 6 cut(s) | 440, 551, 774, 794, 1332, 2160 |
| Hpy166II | GTNNAC | 4 cut(s) | 613, 1043, 1175, 1974 |
| Hpy188III | TCNNGA | 9 cut(s) | 38, 131, 641, 917, 1025, 1332, 1338, 1389, 1511 |
| Hpy8I | GTNNAC | 4 cut(s) | 613, 1043, 1175, 1974 |
| Hpy99I | CGWCG | 4 cut(s) | 229, 660, 834, 1776 |
| HpyAV | CCTTC | 5 cut(s) | 158, 343, 713, 874, 923 |
| HpyCH4III | ACNGT | 6 cut(s) | 148, 676, 983, 1370, 1730, 1762 |
| HpyCH4IV | ACGT | 3 cut(s) | 1122, 1800, 1984 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 86, 350, 415, 424, 835, 1748, 1864 |
| HpyF3I | CTNAG | 3 cut(s) | 157, 346, 465 |
| HpySE526I | ACGT | 3 cut(s) | 1122, 1800, 1984 |
| Hsp92I | GRCGYC | 2 cut(s) | 425, 829 |
| HspAI | GCGC | 4 cut(s) | 56, 89, 1990, 2017 |
| Kpn2I | TCCGGA | 1 cut(s) | 1331 |
| KpnI | GGTACC | 1 cut(s) | 172 |
| Ksp22I | TGATCA | 3 cut(s) | 562, 997, 1687 |
| LmnI | GCTCC | 7 cut(s) | 508, 796, 818, 1087, 1108, 1184, 1231 |
| Lsp1109I | GCAGC | 3 cut(s) | 1036, 1210, 1355 |
| LweI | GCATC | 3 cut(s) | 1000, 1087, 2044 |
| MaeI | CTAG | 6 cut(s) | 63, 221, 491, 608, 1338, 2037 |
| MaeII | ACGT | 3 cut(s) | 1122, 1800, 1984 |
| MaeIII | GTNAC | 6 cut(s) | 148, 745, 1304, 1574, 1735, 1954 |
| MboII | GAAGA | 4 cut(s) | 151, 781, 889, 1441 |
| MfeI | CAATTG | 1 cut(s) | 384 |
| MflI | RGATCY | 3 cut(s) | 487, 1334, 1431 |
| MhlI | GDGCHC | 1 cut(s) | 1189 |
| MluI | ACGCGT | 1 cut(s) | 72 |
| MlyI | GAGTC | 4 cut(s) | 1316, 1394, 1559, 1712 |
| MmeI | TCCRAC | 2 cut(s) | 278, 2031 |
| Mph1103I | ATGCAT | 1 cut(s) | 1869 |
| MroI | TCCGGA | 1 cut(s) | 1331 |
| MroXI | GAANNNNTTC | 1 cut(s) | 702 |
| MseI | TTAA | 4 cut(s) | 393, 1803, 1818, 1848 |
| MslI | CAYNNNNRTG | 3 cut(s) | 311, 712, 981 |
| MspCI | CTTAAG | 1 cut(s) | 392 |
| MspI | CCGG | 6 cut(s) | 440, 551, 774, 794, 1332, 2160 |
| MspR9I | CCNGG | 6 cut(s) | 399, 440, 775, 1580, 2021, 2059 |
| MunI | CAATTG | 1 cut(s) | 384 |
| MvaI | CCWGG | 4 cut(s) | 399, 1580, 2021, 2059 |
| MvnI | CGCG | 3 cut(s) | 74, 89, 1992 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 86, 350, 415, 424, 835, 1748, 1864 |
| NciI | CCSGG | 2 cut(s) | 440, 775 |
| NcoI | CCATGG | 2 cut(s) | 26, 1826 |
| NdeI | CATATG | 3 cut(s) | 628, 741, 990 |
| NheI | GCTAGC | 1 cut(s) | 2036 |
| NlaIV | GGNNCC | 5 cut(s) | 170, 510, 549, 798, 1600 |
| NmeAIII | GCCGAG | 1 cut(s) | 849 |
| NmuCI | GTSAC | 5 cut(s) | 148, 745, 1304, 1735, 1954 |
| NsiI | ATGCAT | 1 cut(s) | 1869 |
| NspI | RCATGY | 4 cut(s) | 202, 756, 1154, 1588 |
| NspV | TTCGAA | 1 cut(s) | 2166 |
| OliI | CACNNNNGTG | 1 cut(s) | 981 |
| PaeI | GCATGC | 1 cut(s) | 1588 |
| PagI | TCATGA | 1 cut(s) | 130 |
| PciI | ACATGT | 1 cut(s) | 1150 |
| PdmI | GAANNNNTTC | 1 cut(s) | 702 |
| PfeI | GAWTC | 5 cut(s) | 97, 127, 303, 478, 1213 |
| Pfl23II | CGTACG | 1 cut(s) | 69 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 806 |
| PkrI | GCNGC | 5 cut(s) | 88, 837, 1051, 1225, 1345 |
| PleI | GAGTC | 4 cut(s) | 1316, 1393, 1558, 1712 |
| PpsI | GAGTC | 4 cut(s) | 1316, 1393, 1558, 1712 |
| Ppu21I | YACGTR | 1 cut(s) | 1985 |
| PscI | ACATGT | 1 cut(s) | 1150 |
| PshAI | GACNNNNGTC | 1 cut(s) | 146 |
| Psp124BI | GAGCTC | 1 cut(s) | 1189 |
| Psp6I | CCWGG | 4 cut(s) | 397, 1578, 2019, 2057 |
| PspGI | CCWGG | 4 cut(s) | 397, 1578, 2019, 2057 |
| PspLI | CGTACG | 1 cut(s) | 69 |
| PspN4I | GGNNCC | 5 cut(s) | 170, 510, 549, 798, 1600 |
| PspPI | GGNCC | 4 cut(s) | 932, 1126, 1823, 1886 |
| PsuI | RGATCY | 3 cut(s) | 487, 1334, 1431 |
| RsaI | GTAC | 5 cut(s) | 49, 71, 170, 326, 1983 |
| RsaNI | GTAC | 5 cut(s) | 48, 70, 169, 325, 1982 |
| RseI | CAYNNNNRTG | 3 cut(s) | 311, 712, 981 |
| SacI | GAGCTC | 1 cut(s) | 1189 |
| SaqAI | TTAA | 4 cut(s) | 393, 1803, 1818, 1848 |
| SatI | GCNGC | 5 cut(s) | 87, 836, 1050, 1224, 1344 |
| Sau96I | GGNCC | 4 cut(s) | 932, 1126, 1823, 1886 |
| SchI | GAGTC | 4 cut(s) | 1316, 1394, 1559, 1712 |
| ScrFI | CCNGG | 6 cut(s) | 399, 440, 775, 1580, 2021, 2059 |
| SduI | GDGCHC | 1 cut(s) | 1189 |
| SfaNI | GCATC | 3 cut(s) | 1000, 1087, 2044 |
| SfuI | TTCGAA | 1 cut(s) | 2166 |
| SinI | GGWCC | 4 cut(s) | 932, 1126, 1823, 1886 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 311, 712, 981 |
| SmlI | CTYRAG | 3 cut(s) | 392, 497, 915 |
| SmoI | CTYRAG | 3 cut(s) | 392, 497, 915 |
| SnaBI | TACGTA | 1 cut(s) | 1985 |
| SphI | GCATGC | 1 cut(s) | 1588 |
| SsiI | CCGC | 9 cut(s) | 80, 87, 766, 817, 835, 965, 1884, 1992, 2089 |
| SspMI | CTAG | 6 cut(s) | 63, 221, 491, 608, 1338, 2037 |
| SstI | GAGCTC | 1 cut(s) | 1189 |
| StyD4I | CCNGG | 6 cut(s) | 397, 438, 773, 1578, 2019, 2057 |
| StyI | CCWWGG | 2 cut(s) | 26, 1826 |
| TaaI | ACNGT | 6 cut(s) | 148, 676, 983, 1370, 1730, 1762 |
| TaiI | ACGT | 3 cut(s) | 1125, 1803, 1987 |
| TaqI | TCGA | 6 cut(s) | 227, 1325, 1388, 1774, 2148, 2166 |
| TatI | WGTACW | 1 cut(s) | 47 |
| TauI | GCSGC | 2 cut(s) | 89, 838 |
| TfiI | GAWTC | 5 cut(s) | 97, 127, 303, 478, 1213 |
| Tru1I | TTAA | 4 cut(s) | 393, 1803, 1818, 1848 |
| Tru9I | TTAA | 4 cut(s) | 393, 1803, 1818, 1848 |
| TscAI | CASTG | 3 cut(s) | 99, 1801, 1860 |
| TseFI | GTSAC | 5 cut(s) | 148, 745, 1304, 1735, 1954 |
| TseI | GCWGC | 3 cut(s) | 1049, 1223, 1343 |
| Tsp45I | GTSAC | 5 cut(s) | 148, 745, 1304, 1735, 1954 |
| TspDTI | ATGAA | 8 cut(s) | 119, 403, 711, 1133, 1226, 1442, 1884, 1937 |
| TspGWI | ACGGA | 3 cut(s) | 644, 794, 1650 |
| TspRI | CASTG | 3 cut(s) | 99, 1801, 1860 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 806 |
| Vha464I | CTTAAG | 1 cut(s) | 392 |
| VpaK11BI | GGWCC | 4 cut(s) | 932, 1126, 1823, 1886 |
| XapI | RAATTY | 4 cut(s) | 584, 1444, 1515, 2132 |
| XbaI | TCTAGA | 1 cut(s) | 1337 |
| XceI | RCATGY | 4 cut(s) | 202, 756, 1154, 1588 |
| XmnI | GAANNNNTTC | 1 cut(s) | 702 |
| XspI | CTAG | 6 cut(s) | 63, 221, 491, 608, 1338, 2037 |
| Zsp2I | ATGCAT | 1 cut(s) | 1869 |