ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| UCR_14kD | PF02271 | 5 - 109 | 1.4e-25 | Ubiquinol-cytochrome C reductase complex 14kD subunit |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 177 |
| AccII | CGCG | 4 cut(s) | 79, 182, 184, 204 |
| AciI | CCGC | 1 cut(s) | 52 |
| AclWI | GGATC | 2 cut(s) | 23, 113 |
| AfaI | GTAC | 2 cut(s) | 116, 233 |
| AgsI | TTSAA | 2 cut(s) | 199, 284 |
| AjnI | CCWGG | 1 cut(s) | 249 |
| AluBI | AGCT | 2 cut(s) | 276, 338 |
| AluI | AGCT | 2 cut(s) | 276, 338 |
| Alw21I | GWGCWC | 1 cut(s) | 340 |
| AlwI | GGATC | 2 cut(s) | 23, 113 |
| ApeKI | GCWGC | 1 cut(s) | 160 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 44 |
| AspLEI | GCGC | 6 cut(s) | 81, 184, 186, 204, 206, 357 |
| AspS9I | GGNCC | 1 cut(s) | 211 |
| AsuHPI | GGTGA | 1 cut(s) | 313 |
| AvaII | GGWCC | 1 cut(s) | 211 |
| BanII | GRGCYC | 1 cut(s) | 340 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 215, 247 |
| BauI | CACGAG | 1 cut(s) | 227 |
| Bbv12I | GWGCWC | 1 cut(s) | 340 |
| BbvI | GCAGC | 1 cut(s) | 147 |
| BciT130I | CCWGG | 1 cut(s) | 251 |
| BglII | AGATCT | 1 cut(s) | 244 |
| BisI | GCNGC | 1 cut(s) | 161 |
| BlsI | GCNGC | 1 cut(s) | 162 |
| Bme1390I | CCNGG | 1 cut(s) | 251 |
| Bme18I | GGWCC | 1 cut(s) | 211 |
| BmgT120I | GGNCC | 1 cut(s) | 211 |
| BmrFI | CCNGG | 1 cut(s) | 251 |
| BpmI | CTGGAG | 1 cut(s) | 233 |
| BsaJI | CCNNGG | 2 cut(s) | 32, 207 |
| Bse1I | ACTGG | 1 cut(s) | 47 |
| BseBI | CCWGG | 1 cut(s) | 251 |
| BseDI | CCNNGG | 2 cut(s) | 32, 207 |
| BseNI | ACTGG | 1 cut(s) | 47 |
| BsePI | GCGCGC | 2 cut(s) | 182, 202 |
| BseXI | GCAGC | 1 cut(s) | 147 |
| Bsh1236I | CGCG | 4 cut(s) | 79, 182, 184, 204 |
| BsiHKAI | GWGCWC | 1 cut(s) | 340 |
| Bsp1286I | GDGCHC | 1 cut(s) | 340 |
| Bsp143I | GATC | 4 cut(s) | 28, 109, 118, 244 |
| Bsp19I | CCATGG | 1 cut(s) | 207 |
| BspACI | CCGC | 1 cut(s) | 52 |
| BspFNI | CGCG | 4 cut(s) | 79, 182, 184, 204 |
| BspPI | GGATC | 2 cut(s) | 23, 113 |
| BsrI | ACTGG | 1 cut(s) | 47 |
| BssECI | CCNNGG | 2 cut(s) | 32, 207 |
| BssHII | GCGCGC | 2 cut(s) | 182, 202 |
| BssMI | GATC | 4 cut(s) | 28, 109, 118, 244 |
| BssSI | CACGAG | 1 cut(s) | 227 |
| BssT1I | CCWWGG | 2 cut(s) | 32, 207 |
| Bst2BI | CACGAG | 1 cut(s) | 227 |
| Bst2UI | CCWGG | 1 cut(s) | 251 |
| Bst6I | CTCTTC | 1 cut(s) | 299 |
| BstC8I | GCNNGC | 5 cut(s) | 52, 56, 184, 204, 294 |
| BstDSI | CCRYGG | 1 cut(s) | 207 |
| BstFNI | CGCG | 4 cut(s) | 79, 182, 184, 204 |
| BstHHI | GCGC | 6 cut(s) | 81, 184, 186, 204, 206, 357 |
| BstKTI | GATC | 4 cut(s) | 31, 112, 121, 247 |
| BstMBI | GATC | 4 cut(s) | 28, 109, 118, 244 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 190, 199, 335 |
| BstNI | CCWGG | 1 cut(s) | 251 |
| BstSCI | CCNGG | 1 cut(s) | 249 |
| BstUI | CGCG | 4 cut(s) | 79, 182, 184, 204 |
| BstV1I | GCAGC | 1 cut(s) | 147 |
| BstX2I | RGATCY | 2 cut(s) | 28, 244 |
| BstYI | RGATCY | 2 cut(s) | 28, 244 |
| BtgI | CCRYGG | 1 cut(s) | 207 |
| Cac8I | GCNNGC | 5 cut(s) | 52, 56, 184, 204, 294 |
| CfoI | GCGC | 6 cut(s) | 81, 184, 186, 204, 206, 357 |
| Cfr13I | GGNCC | 1 cut(s) | 211 |
| CseI | GACGC | 1 cut(s) | 188 |
| Csp6I | GTAC | 2 cut(s) | 115, 232 |
| CviAII | CATG | 3 cut(s) | 61, 208, 220 |
| CviJI | RGCY | 9 cut(s) | 5, 97, 149, 160, 254, 276, 296, 329, 338 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 97, 149, 160, 254, 276, 296, 329, 338 |
| CviQI | GTAC | 2 cut(s) | 115, 232 |
| DpnI | GATC | 4 cut(s) | 30, 111, 120, 246 |
| DpnII | GATC | 4 cut(s) | 28, 109, 118, 244 |
| Eam1104I | CTCTTC | 1 cut(s) | 299 |
| EarI | CTCTTC | 1 cut(s) | 299 |
| Ecl136II | GAGCTC | 1 cut(s) | 338 |
| Eco130I | CCWWGG | 2 cut(s) | 32, 207 |
| Eco24I | GRGCYC | 1 cut(s) | 340 |
| Eco32I | GATATC | 1 cut(s) | 139 |
| Eco47I | GGWCC | 1 cut(s) | 211 |
| Eco53kI | GAGCTC | 1 cut(s) | 338 |
| EcoICRI | GAGCTC | 1 cut(s) | 338 |
| EcoRII | CCWGG | 1 cut(s) | 249 |
| EcoRV | GATATC | 1 cut(s) | 139 |
| EcoT14I | CCWWGG | 2 cut(s) | 32, 207 |
| EcoT38I | GRGCYC | 1 cut(s) | 340 |
| ErhI | CCWWGG | 2 cut(s) | 32, 207 |
| FaeI | CATG | 3 cut(s) | 64, 211, 223 |
| FaiI | YATR | 6 cut(s) | 26, 62, 209, 221, 257, 367 |
| FatI | CATG | 3 cut(s) | 60, 207, 219 |
| FauI | CCCGC | 1 cut(s) | 59 |
| FblI | GTMKAC | 1 cut(s) | 177 |
| Fnu4HI | GCNGC | 1 cut(s) | 161 |
| FriOI | GRGCYC | 1 cut(s) | 340 |
| Fsp4HI | GCNGC | 1 cut(s) | 161 |
| GlaI | GCGC | 6 cut(s) | 80, 183, 185, 203, 205, 356 |
| GluI | GCNGC | 1 cut(s) | 161 |
| GsuI | CTGGAG | 1 cut(s) | 233 |
| HgaI | GACGC | 1 cut(s) | 188 |
| HhaI | GCGC | 6 cut(s) | 81, 184, 186, 204, 206, 357 |
| Hin1II | CATG | 3 cut(s) | 64, 211, 223 |
| Hin6I | GCGC | 6 cut(s) | 79, 182, 184, 202, 204, 355 |
| HinP1I | GCGC | 6 cut(s) | 79, 182, 184, 202, 204, 355 |
| HincII | GTYRAC | 1 cut(s) | 178 |
| HindII | GTYRAC | 1 cut(s) | 178 |
| HinfI | GANTC | 1 cut(s) | 154 |
| HphI | GGTGA | 1 cut(s) | 313 |
| Hpy166II | GTNNAC | 1 cut(s) | 178 |
| Hpy188I | TCNGA | 2 cut(s) | 153, 272 |
| Hpy188III | TCNNGA | 1 cut(s) | 284 |
| Hpy8I | GTNNAC | 1 cut(s) | 178 |
| Hpy99I | CGWCG | 2 cut(s) | 110, 182 |
| HpyAV | CCTTC | 2 cut(s) | 58, 290 |
| HpyCH4V | TGCA | 2 cut(s) | 16, 259 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 190, 199, 335 |
| Hsp92II | CATG | 3 cut(s) | 64, 211, 223 |
| HspAI | GCGC | 6 cut(s) | 79, 182, 184, 202, 204, 355 |
| Kzo9I | GATC | 4 cut(s) | 28, 109, 118, 244 |
| LmnI | GCTCC | 1 cut(s) | 335 |
| LpnPI | CCDG | 8 cut(s) | 28, 68, 178, 203, 236, 263, 278, 284 |
| Lsp1109I | GCAGC | 1 cut(s) | 147 |
| MalI | GATC | 4 cut(s) | 30, 111, 120, 246 |
| MboI | GATC | 4 cut(s) | 28, 109, 118, 244 |
| MboII | GAAGA | 3 cut(s) | 49, 254, 316 |
| MflI | RGATCY | 2 cut(s) | 28, 244 |
| MhlI | GDGCHC | 1 cut(s) | 340 |
| MnlI | CCTC | 6 cut(s) | 92, 139, 224, 245, 300, 319 |
| MroXI | GAANNNNTTC | 1 cut(s) | 44 |
| MspR9I | CCNGG | 1 cut(s) | 251 |
| MvaI | CCWGG | 1 cut(s) | 251 |
| MvnI | CGCG | 4 cut(s) | 79, 182, 184, 204 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 190, 199, 335 |
| NcoI | CCATGG | 1 cut(s) | 207 |
| NdeII | GATC | 4 cut(s) | 28, 109, 118, 244 |
| NlaIII | CATG | 3 cut(s) | 64, 211, 223 |
| PauI | GCGCGC | 2 cut(s) | 182, 202 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 114 |
| PdmI | GAANNNNTTC | 1 cut(s) | 44 |
| PfeI | GAWTC | 1 cut(s) | 154 |
| PkrI | GCNGC | 1 cut(s) | 162 |
| Psp124BI | GAGCTC | 1 cut(s) | 340 |
| Psp6I | CCWGG | 1 cut(s) | 249 |
| PspGI | CCWGG | 1 cut(s) | 249 |
| PspPI | GGNCC | 1 cut(s) | 211 |
| PsuI | RGATCY | 2 cut(s) | 28, 244 |
| PteI | GCGCGC | 2 cut(s) | 182, 202 |
| RsaI | GTAC | 2 cut(s) | 116, 233 |
| RsaNI | GTAC | 2 cut(s) | 115, 232 |
| SacI | GAGCTC | 1 cut(s) | 340 |
| SalI | GTCGAC | 1 cut(s) | 176 |
| SatI | GCNGC | 1 cut(s) | 161 |
| Sau3AI | GATC | 4 cut(s) | 28, 109, 118, 244 |
| Sau96I | GGNCC | 1 cut(s) | 211 |
| ScrFI | CCNGG | 1 cut(s) | 251 |
| SduI | GDGCHC | 1 cut(s) | 340 |
| SetI | ASST | 5 cut(s) | 216, 237, 278, 282, 340 |
| SinI | GGWCC | 1 cut(s) | 211 |
| SsiI | CCGC | 1 cut(s) | 52 |
| SstI | GAGCTC | 1 cut(s) | 340 |
| StyD4I | CCNGG | 1 cut(s) | 249 |
| StyI | CCWWGG | 2 cut(s) | 32, 207 |
| TaqI | TCGA | 2 cut(s) | 100, 177 |
| TfiI | GAWTC | 1 cut(s) | 154 |
| TseI | GCWGC | 1 cut(s) | 160 |
| TspDTI | ATGAA | 3 cut(s) | 13, 77, 236 |
| TspGWI | ACGGA | 1 cut(s) | 74 |
| VpaK11BI | GGWCC | 1 cut(s) | 211 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 39 |
| XmiI | GTMKAC | 1 cut(s) | 177 |
| XmnI | GAANNNNTTC | 1 cut(s) | 44 |