Rmu_sc0001001.1_g000001

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001001.1
OG0000044
Physical Location & Seq
Forward (+)
6519 .. 9304
2786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001001.1_g000001.1.cds

Sequence Viewer

Length: 2052 bp
atgagctcgatctgtccatggtcattcttggatactgggacgccaagggctcctcgctcctatgcatctgtggttgtgaaaccggcagtctccatagcaagtcttctgcctcctgagatccatgatggcaaaatgactgtcacgatttctgaagaagggtatcaagccggtctggaaaagtgtaagcacatgctcttggctcgtctccacttagcttctggggaaaagtactctcttgccgacctgcgcaagaagttgtccattgtttggggtgagattggtaattgcagcatcattccaatggggaagggggttttggttgacctggatctgtcctcggatctcccttgtgatttgactgttcgtagaaaaaacggggaggaggttgttgtggtcgaagttgaatatgaatggctccctgactattgtctccattgtggcaacataggtcatagggtttcagcttgtaagcttgtccaaaagcctacaggttctattccaccagagaaggccgatgggggtcgtggacgctcacgcaagcctcgccgccgccagcataaatctaaacagaagtatgttccaaaacaatcagtgaaagagactggaaagcaggttatagtggatagtactcctccagtagcggaagatcatggagagggtcctcccttttctaagaagactctttctcaggttccatgtcaagttcctacgttggagcctacattggggaatggctctacggacgccactaacactgtggttcaggaagttgtgaggccaattggtttggctaccgacaccgttatagtggccatggctgcgaacccacttgatgcacaacagaacgttgtaggtgatggtggccctcgatgtgtgaatgatgctaatggtggaaacgggagtagtttttccactagtggttccgagatgaatgaggaatctgatcatgatgttaatattacttctttggttcgtttacatccaaagagttggtatgaggaggctgaacgtgaagtgacttgtgttatttctacggtttatgctcatactaccgctgcggaacgtcgccggttatgggttgatcttgctaatgttaagggtagctttgtcacaggcccttggctagttttcggagattttaacgcggtgctaggagctcatgaaaagaaaggaggcgccccgccttgtcaacgatcttgtgcggaatttcaagctatgtcggacatttgtgaacttggccacgttgatattaaaggggccgagttcacctgggttcgtcggcgtggagtccaaggtaatgttcaggtgcgtttggataggagtcttgcaaatttagcttggttggatgcttgggaccattatgattgttgtactctacctaagttctgttcagatcaccatccacttcttatggccttctctaagacctcaggagctcgccaatgccttttccggtttcgaaaaatgtggttggagcacaaagaatttcatggttttgttaagcattgttggtcttccattcctttattcggttgtccctcgtcaattcttcagcataagctgcaggttttgcgaaaggctcttcgcagctggaactgggaggtctttggggatatccatgctcgggtcaattctgatcttaatgcattggaagttctacaacaagaaattgcttcatcggggggctctgatgatgattttgctaaagagaatgagcttcaagccaatttgaatgaatctataaggttgcaggagttattctggcgtgagaagtctaggttaagatggttatcagaaggtgatcggaatacttctttttttcatgctcaatgtagagcccggaggatgcggtctacaatttctttactgcgcgacggtagtgaagtttatgaggatcctaactcaattcaaaatcacattgttgattactattcagatcttttgactaataatgcagtttctactgatcatggtcttgttgatagggttattccctcattagtcactgatgaagagaactcgatcttctcttacctcaattcctacggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

683

Amino Acids

75.98

Weight (kDa)

6.46

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 248
Acc36I ACCTGC 3 cut(s) 252, 601, 1555
AccB1I GGYRCC 1 cut(s) 1175
AccB7I CCANNNNNTGG 1 cut(s) 267
AccI GTMKAC 1 cut(s) 1853
AccII CGCG 2 cut(s) 1145, 1872
AciI CCGC 9 cut(s) 547, 550, 641, 1053, 1058, 1145, 1181, 1202, 1849
AclI AACGTT 1 cut(s) 846
AclWI GGATC 5 cut(s) 112, 336, 348, 1889, 1902
AcoI YGGCCR 2 cut(s) 810, 1237
AcsI RAATTY 3 cut(s) 1205, 1330, 1484
AcuI CTGAAG 2 cut(s) 171, 1535
AcyI GRCGYC 3 cut(s) 41, 744, 1176
AfaI GTAC 3 cut(s) 230, 628, 1372
AfiI CCNNNNNNNGG 5 cut(s) 267, 725, 1075, 1529, 1624
AgsI TTSAA 5 cut(s) 404, 1211, 1721, 1732, 1910
AhlI ACTAGT 1 cut(s) 914
AjnI CCWGG 2 cut(s) 324, 1268
AjuI GAANNNNNNNTTGG 4 cut(s) 299, 331, 1284, 1316
Alw21I GWGCWC 4 cut(s) 8, 1159, 1438, 1479
Alw26I GTCTC 4 cut(s) 94, 209, 434, 593
AlwI GGATC 5 cut(s) 112, 336, 348, 1889, 1902
Ama87I CYCGRG 1 cut(s) 1623
AoxI GGCC 8 cut(s) 510, 776, 810, 862, 1114, 1237, 1257, 1413
ApeKI GCWGC 5 cut(s) 288, 818, 1055, 1561, 1587
ApoI RAATTY 3 cut(s) 1205, 1330, 1484
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
AspLEI GCGC 3 cut(s) 249, 1178, 1872
AspS9I GGNCC 5 cut(s) 659, 863, 1115, 1257, 1354
AsuC2I CCSGG 1 cut(s) 1840
AsuHPI GGTGA 5 cut(s) 284, 866, 1258, 1388, 1811
AsuII TTCGAA 1 cut(s) 1459
AvaI CYCGRG 1 cut(s) 1623
AvaII GGWCC 2 cut(s) 659, 1354
AxyI CCTNAGG 1 cut(s) 1429
BalI TGGCCA 2 cut(s) 812, 1239
BamHI GGATCC 1 cut(s) 1894
BanI GGYRCC 1 cut(s) 1175
BanII GRGCYC 6 cut(s) 8, 52, 1159, 1438, 1688, 1840
BbsI GAAGAC 3 cut(s) 95, 683, 1506
Bbv12I GWGCWC 4 cut(s) 8, 1159, 1438, 1479
BbvI GCAGC 5 cut(s) 300, 805, 1042, 1548, 1599
BccI CCATC 5 cut(s) 119, 509, 851, 1407, 1779
BciT130I CCWGG 2 cut(s) 326, 1270
BciVI GTATCC 1 cut(s) 25
BclI TGATCA 2 cut(s) 943, 1966
BcnI CCSGG 1 cut(s) 1840
BcoDI GTCTC 4 cut(s) 94, 209, 434, 593
BcuI ACTAGT 1 cut(s) 914
BfaI CTAG 4 cut(s) 915, 1124, 1151, 1776
BfmI CTRYAG 2 cut(s) 486, 1562
BfoI RGCGCY 1 cut(s) 1179
BfuAI ACCTGC 3 cut(s) 252, 601, 1555
BfuI GTATCC 1 cut(s) 25
BglII AGATCT 1 cut(s) 1936
BisI GCNGC 7 cut(s) 289, 547, 550, 819, 1056, 1562, 1588
BlsI GCNGC 7 cut(s) 290, 548, 551, 820, 1057, 1563, 1589
BmcAI AGTACT 2 cut(s) 230, 628
Bme1390I CCNGG 3 cut(s) 326, 1270, 1840
Bme18I GGWCC 2 cut(s) 659, 1354
BmeT110I CYCGRG 1 cut(s) 1623
BmgT120I GGNCC 5 cut(s) 659, 863, 1115, 1257, 1354
BmrFI CCNGG 3 cut(s) 326, 1270, 1840
BmrI ACTGGG 2 cut(s) 45, 1606
BmsI GCATC 6 cut(s) 74, 300, 823, 871, 1336, 1836
BmuI ACTGGG 2 cut(s) 45, 1606
BoxI GACNNNNGTC 1 cut(s) 426
BpiI GAAGAC 3 cut(s) 95, 683, 1506
BpmI CTGGAG 1 cut(s) 618
Bpu14I TTCGAA 1 cut(s) 1459
BpuMI CCSGG 1 cut(s) 1840
BsaBI GATNNNNATC 2 cut(s) 1398, 1789
BsaHI GRCGYC 3 cut(s) 41, 744, 1176
BsaJI CCNNGG 7 cut(s) 17, 44, 336, 813, 1118, 1269, 1291
BsaWI WCCGGW 1 cut(s) 1452
Bsc4I CCNNNNNNNGG 5 cut(s) 267, 725, 1075, 1529, 1624
Bse118I RCCGGY 3 cut(s) 82, 167, 1068
Bse1I ACTGG 4 cut(s) 40, 607, 635, 1601
Bse21I CCTNAGG 1 cut(s) 1429
Bse8I GATNNNNATC 2 cut(s) 1398, 1789
BseBI CCWGG 2 cut(s) 326, 1270
BseDI CCNNGG 7 cut(s) 17, 44, 336, 813, 1118, 1269, 1291
BseGI GGATG 4 cut(s) 979, 1351, 1399, 1851
BseJI GATNNNNATC 2 cut(s) 1398, 1789
BseLI CCNNNNNNNGG 5 cut(s) 267, 725, 1075, 1529, 1624
BseMII CTCAG 3 cut(s) 105, 701, 1443
BseNI ACTGG 4 cut(s) 40, 607, 635, 1601
BseRI GAGGAG 4 cut(s) 42, 395, 621, 1013
BseXI GCAGC 5 cut(s) 300, 805, 1042, 1548, 1599
Bsh1236I CGCG 2 cut(s) 1145, 1872
BshFI GGCC 8 cut(s) 512, 778, 812, 864, 1116, 1239, 1259, 1415
BshNI GGYRCC 1 cut(s) 1175
BsiHKAI GWGCWC 4 cut(s) 8, 1159, 1438, 1479
BsiHKCI CYCGRG 1 cut(s) 1623
BsiSI CCGG 5 cut(s) 83, 168, 1069, 1453, 1840
BslFI GGGAC 3 cut(s) 52, 1367, 1521
BslI CCNNNNNNNGG 5 cut(s) 267, 725, 1075, 1529, 1624
BsmAI GTCTC 4 cut(s) 94, 209, 434, 593
BsmBI CGTCTC 1 cut(s) 209
BsmFI GGGAC 3 cut(s) 52, 1367, 1521
BsnI GGCC 8 cut(s) 512, 778, 812, 864, 1116, 1239, 1259, 1415
BsoBI CYCGRG 1 cut(s) 1623
Bsp119I TTCGAA 1 cut(s) 1459
Bsp1286I GDGCHC 7 cut(s) 8, 52, 1159, 1438, 1479, 1688, 1840
Bsp19I CCATGG 2 cut(s) 17, 813
BspACI CCGC 9 cut(s) 547, 550, 641, 1053, 1058, 1145, 1181, 1202, 1849
BspANI GGCC 8 cut(s) 512, 778, 812, 864, 1116, 1239, 1259, 1415
BspCNI CTCAG 3 cut(s) 106, 700, 1442
BspFNI CGCG 2 cut(s) 1145, 1872
BspHI TCATGA 2 cut(s) 946, 1159
BspMAI CTGCAG 1 cut(s) 1566
BspMI ACCTGC 3 cut(s) 252, 601, 1555
BspPI GGATC 5 cut(s) 112, 336, 348, 1889, 1902
BspQI GCTCTTC 1 cut(s) 1587
BspT104I TTCGAA 1 cut(s) 1459
BspT107I GGYRCC 1 cut(s) 1175
BsrFI RCCGGY 3 cut(s) 82, 167, 1068
BsrI ACTGG 4 cut(s) 40, 607, 635, 1601
BssAI RCCGGY 3 cut(s) 82, 167, 1068
BssECI CCNNGG 7 cut(s) 17, 44, 336, 813, 1118, 1269, 1291
BssNI GRCGYC 3 cut(s) 41, 744, 1176
BssT1I CCWWGG 5 cut(s) 17, 44, 813, 1118, 1291
Bst2UI CCWGG 2 cut(s) 326, 1270
Bst4CI ACNGT 6 cut(s) 139, 361, 757, 802, 1036, 1877
Bst6I CTCTTC 2 cut(s) 1587, 2007
BstACI GRCGYC 3 cut(s) 41, 744, 1176
BstAPI GCANNNNNTGC 2 cut(s) 1561, 1570
BstBI TTCGAA 1 cut(s) 1459
BstC8I GCNNGC 3 cut(s) 539, 554, 1438
BstDEI CTNAG 7 cut(s) 114, 211, 672, 687, 1380, 1422, 1429
BstDSI CCRYGG 2 cut(s) 17, 813
BstF5I GGATG 4 cut(s) 979, 1351, 1399, 1851
BstFNI CGCG 2 cut(s) 1145, 1872
BstH2I RGCGCY 1 cut(s) 1179
BstHHI GCGC 3 cut(s) 249, 1178, 1872
BstMAI GTCTC 4 cut(s) 94, 209, 434, 593
BstMWI GCNNNNNNNGC 5 cut(s) 543, 818, 1334, 1561, 1570
BstNI CCWGG 2 cut(s) 326, 1270
BstNSI RCATGY 1 cut(s) 193
BstPAI GACNNNNGTC 1 cut(s) 426
BstSCI CCNGG 3 cut(s) 324, 1268, 1838
BstSFI CTRYAG 2 cut(s) 486, 1562
BstUI CGCG 2 cut(s) 1145, 1872
BstV1I GCAGC 5 cut(s) 300, 805, 1042, 1548, 1599
BstV2I GAAGAC 3 cut(s) 95, 683, 1506
BstX2I RGATCY 5 cut(s) 117, 328, 340, 1894, 1936
BstXI CCANNNNNNTGG 1 cut(s) 990
BstYI RGATCY 5 cut(s) 117, 328, 340, 1894, 1936
Bsu36I CCTNAGG 1 cut(s) 1429
BsuI GTATCC 1 cut(s) 25
BsuRI GGCC 8 cut(s) 512, 778, 812, 864, 1116, 1239, 1259, 1415
BtgI CCRYGG 2 cut(s) 17, 813
BtsCI GGATG 4 cut(s) 979, 1351, 1399, 1851
BtsIMutI CAGTG 3 cut(s) 597, 753, 2004
BveI ACCTGC 3 cut(s) 252, 601, 1555
Cac8I GCNNGC 3 cut(s) 539, 554, 1438
CciI TCATGA 2 cut(s) 946, 1159
CfoI GCGC 3 cut(s) 249, 1178, 1872
Cfr10I RCCGGY 3 cut(s) 82, 167, 1068
Cfr13I GGNCC 5 cut(s) 659, 863, 1115, 1257, 1354
CseI GACGC 3 cut(s) 49, 537, 752
Csp6I GTAC 3 cut(s) 229, 627, 1371
CviQI GTAC 3 cut(s) 229, 627, 1371
DdeI CTNAG 7 cut(s) 114, 211, 672, 687, 1380, 1422, 1429
DinI GGCGCC 1 cut(s) 1177
EaeI YGGCCR 2 cut(s) 810, 1237
Eam1104I CTCTTC 2 cut(s) 1587, 2007
EarI CTCTTC 2 cut(s) 1587, 2007
Ecl136II GAGCTC 3 cut(s) 6, 1157, 1436
Eco130I CCWWGG 5 cut(s) 17, 44, 813, 1118, 1291
Eco24I GRGCYC 6 cut(s) 8, 52, 1159, 1438, 1688, 1840
Eco32I GATATC 1 cut(s) 1615
Eco47I GGWCC 2 cut(s) 659, 1354
Eco53kI GAGCTC 3 cut(s) 6, 1157, 1436
Eco57I CTGAAG 2 cut(s) 171, 1535
Eco81I CCTNAGG 1 cut(s) 1429
Eco88I CYCGRG 1 cut(s) 1623
EcoICRI GAGCTC 3 cut(s) 6, 1157, 1436
EcoO109I RGGNCCY 2 cut(s) 659, 1115
EcoRII CCWGG 2 cut(s) 324, 1268
EcoRV GATATC 1 cut(s) 1615
EcoT14I CCWWGG 5 cut(s) 17, 44, 813, 1118, 1291
EcoT22I ATGCAT 2 cut(s) 67, 1648
EcoT38I GRGCYC 6 cut(s) 8, 52, 1159, 1438, 1688, 1840
EgeI GGCGCC 1 cut(s) 1177
EheI GGCGCC 1 cut(s) 1177
ErhI CCWWGG 5 cut(s) 17, 44, 813, 1118, 1291
Esp3I CGTCTC 1 cut(s) 209
FalI AAGNNNNNCTT 2 cut(s) 1088, 1120
FaqI GGGAC 3 cut(s) 52, 1367, 1521
FauI CCCGC 1 cut(s) 1188
FbaI TGATCA 2 cut(s) 943, 1966
FblI GTMKAC 1 cut(s) 1853
Fnu4HI GCNGC 7 cut(s) 289, 547, 550, 819, 1056, 1562, 1588
FokI GGATG 4 cut(s) 966, 1358, 1386, 1858
FriOI GRGCYC 6 cut(s) 8, 52, 1159, 1438, 1688, 1840
Fsp4HI GCNGC 7 cut(s) 289, 547, 550, 819, 1056, 1562, 1588
FspBI CTAG 4 cut(s) 915, 1124, 1151, 1776
FspI TGCGCA 1 cut(s) 248
GlaI GCGC 3 cut(s) 248, 1177, 1871
GluI GCNGC 7 cut(s) 289, 547, 550, 819, 1056, 1562, 1588
GsuI CTGGAG 1 cut(s) 618
HaeII RGCGCY 1 cut(s) 1179
HaeIII GGCC 8 cut(s) 512, 778, 812, 864, 1116, 1239, 1259, 1415
HapII CCGG 5 cut(s) 83, 168, 1069, 1453, 1840
HgaI GACGC 3 cut(s) 49, 537, 752
HhaI GCGC 3 cut(s) 249, 1178, 1872
Hin1I GRCGYC 3 cut(s) 41, 744, 1176
Hin6I GCGC 3 cut(s) 247, 1176, 1870
HinP1I GCGC 3 cut(s) 247, 1176, 1870
HincII GTYRAC 2 cut(s) 322, 1190
HindII GTYRAC 2 cut(s) 322, 1190
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 5 cut(s) 679, 938, 1287, 1321, 1736
HpaII CCGG 5 cut(s) 83, 168, 1069, 1453, 1840
HphI GGTGA 5 cut(s) 284, 866, 1258, 1388, 1811
Hpy166II GTNNAC 7 cut(s) 322, 527, 977, 1190, 1232, 1266, 1854
Hpy188III TCNNGA 7 cut(s) 113, 142, 173, 764, 947, 1160, 1431
Hpy8I GTNNAC 7 cut(s) 322, 527, 977, 1190, 1232, 1266, 1854
Hpy99I CGWCG 3 cut(s) 1068, 1281, 1877
HpyAV CCTTC 5 cut(s) 149, 301, 502, 1426, 1790
HpyCH4III ACNGT 6 cut(s) 139, 361, 757, 802, 1036, 1877
HpyCH4IV ACGT 5 cut(s) 710, 846, 1009, 1063, 1242
HpyCH4V TGCA 8 cut(s) 65, 288, 836, 1328, 1564, 1646, 1750, 1955
HpyF10VI GCNNNNNNNGC 5 cut(s) 543, 818, 1334, 1561, 1570
HpyF3I CTNAG 7 cut(s) 114, 211, 672, 687, 1380, 1422, 1429
HpySE526I ACGT 5 cut(s) 710, 846, 1009, 1063, 1242
Hsp92I GRCGYC 3 cut(s) 41, 744, 1176
HspAI GCGC 3 cut(s) 247, 1176, 1870
KasI GGCGCC 1 cut(s) 1175
Ksp22I TGATCA 2 cut(s) 943, 1966
LguI GCTCTTC 1 cut(s) 1587
LmnI GCTCC 7 cut(s) 55, 62, 420, 715, 1154, 1433, 1474
Lsp1109I GCAGC 5 cut(s) 300, 805, 1042, 1548, 1599
LweI GCATC 6 cut(s) 74, 300, 823, 871, 1336, 1836
MaeI CTAG 4 cut(s) 915, 1124, 1151, 1776
MaeII ACGT 5 cut(s) 710, 846, 1009, 1063, 1242
MaeIII GTNAC 4 cut(s) 139, 1015, 1108, 2002
MboII GAAGA 9 cut(s) 95, 164, 656, 688, 1506, 1541, 1574, 2017, 2024
MfeI CAATTG 1 cut(s) 780
MflI RGATCY 5 cut(s) 117, 328, 340, 1894, 1936
MhlI GDGCHC 7 cut(s) 8, 52, 1159, 1438, 1479, 1688, 1840
MlsI TGGCCA 2 cut(s) 812, 1239
MluNI TGGCCA 2 cut(s) 812, 1239
Mly113I GGCGCC 1 cut(s) 1176
MlyI GAGTC 3 cut(s) 673, 1296, 1330
MmeI TCCRAC 4 cut(s) 693, 1200, 1323, 1452
Mox20I TGGCCA 2 cut(s) 812, 1239
Mph1103I ATGCAT 2 cut(s) 67, 1648
MscI TGGCCA 2 cut(s) 812, 1239
MseI TTAA 7 cut(s) 954, 1095, 1140, 1251, 1500, 1641, 1781
MslI CAYNNNNRTG 1 cut(s) 299
Msp20I TGGCCA 2 cut(s) 812, 1239
MspA1I CMGCKG 2 cut(s) 1055, 1590
MspI CCGG 5 cut(s) 83, 168, 1069, 1453, 1840
MspR9I CCNGG 3 cut(s) 326, 1270, 1840
MunI CAATTG 1 cut(s) 780
MvaI CCWGG 2 cut(s) 326, 1270
MvnI CGCG 2 cut(s) 1145, 1872
MwoI GCNNNNNNNGC 5 cut(s) 543, 818, 1334, 1561, 1570
NarI GGCGCC 1 cut(s) 1176
NciI CCSGG 1 cut(s) 1840
NcoI CCATGG 2 cut(s) 17, 813
NmeAIII GCCGAG 1 cut(s) 1285
NmuCI GTSAC 4 cut(s) 139, 1015, 1108, 2002
NsbI TGCGCA 1 cut(s) 248
NsiI ATGCAT 2 cut(s) 67, 1648
NspI RCATGY 1 cut(s) 193
NspV TTCGAA 1 cut(s) 1459
PagI TCATGA 2 cut(s) 946, 1159
PciSI GCTCTTC 1 cut(s) 1587
PfeI GAWTC 2 cut(s) 938, 1736
PflMI CCANNNNNTGG 1 cut(s) 267
PkrI GCNGC 7 cut(s) 290, 548, 551, 820, 1057, 1563, 1589
PleI GAGTC 3 cut(s) 673, 1295, 1329
PluTI GGCGCC 1 cut(s) 1179
PpsI GAGTC 3 cut(s) 673, 1295, 1329
PpuMI RGGWCCY 1 cut(s) 659
PshAI GACNNNNGTC 1 cut(s) 426
Psp124BI GAGCTC 3 cut(s) 8, 1159, 1438
Psp1406I AACGTT 1 cut(s) 846
Psp5II RGGWCCY 1 cut(s) 659
Psp6I CCWGG 2 cut(s) 324, 1268
PspGI CCWGG 2 cut(s) 324, 1268
PspPI GGNCC 5 cut(s) 659, 863, 1115, 1257, 1354
PspPPI RGGWCCY 1 cut(s) 659
PstI CTGCAG 1 cut(s) 1566
PsuI RGATCY 5 cut(s) 117, 328, 340, 1894, 1936
PvuII CAGCTG 1 cut(s) 1590
RsaI GTAC 3 cut(s) 230, 628, 1372
RsaNI GTAC 3 cut(s) 229, 627, 1371
RseI CAYNNNNRTG 1 cut(s) 299
SacI GAGCTC 3 cut(s) 8, 1159, 1438
SapI GCTCTTC 1 cut(s) 1587
SaqAI TTAA 7 cut(s) 954, 1095, 1140, 1251, 1500, 1641, 1781
SatI GCNGC 7 cut(s) 289, 547, 550, 819, 1056, 1562, 1588
Sau96I GGNCC 5 cut(s) 659, 863, 1115, 1257, 1354
ScaI AGTACT 2 cut(s) 230, 628
SchI GAGTC 3 cut(s) 673, 1296, 1330
ScrFI CCNGG 3 cut(s) 326, 1270, 1840
SduI GDGCHC 7 cut(s) 8, 52, 1159, 1438, 1479, 1688, 1840
SfaNI GCATC 6 cut(s) 74, 300, 823, 871, 1336, 1836
SfcI CTRYAG 2 cut(s) 486, 1562
SfoI GGCGCC 1 cut(s) 1177
SfuI TTCGAA 1 cut(s) 1459
SinI GGWCC 2 cut(s) 659, 1354
SmiMI CAYNNNNRTG 1 cut(s) 299
SpeI ACTAGT 1 cut(s) 914
SsiI CCGC 9 cut(s) 547, 550, 641, 1053, 1058, 1145, 1181, 1202, 1849
SspDI GGCGCC 1 cut(s) 1175
SspI AATATT 1 cut(s) 958
SspMI CTAG 4 cut(s) 915, 1124, 1151, 1776
SstI GAGCTC 3 cut(s) 8, 1159, 1438
StyD4I CCNGG 3 cut(s) 324, 1268, 1838
StyI CCWWGG 5 cut(s) 17, 44, 813, 1118, 1291
TaaI ACNGT 6 cut(s) 139, 361, 757, 802, 1036, 1877
TaiI ACGT 5 cut(s) 713, 849, 1012, 1066, 1245
TaqI TCGA 5 cut(s) 8, 396, 868, 1459, 2021
TatI WGTACW 3 cut(s) 228, 626, 1370
TauI GCSGC 2 cut(s) 549, 552
TfiI GAWTC 2 cut(s) 938, 1736
Tru1I TTAA 7 cut(s) 954, 1095, 1140, 1251, 1500, 1641, 1781
Tru9I TTAA 7 cut(s) 954, 1095, 1140, 1251, 1500, 1641, 1781
TscAI CASTG 3 cut(s) 597, 760, 2011
TseFI GTSAC 4 cut(s) 139, 1015, 1108, 2002
TseI GCWGC 5 cut(s) 288, 818, 1055, 1561, 1587
Tsp45I GTSAC 4 cut(s) 139, 1015, 1108, 2002
TspDTI ATGAA 8 cut(s) 423, 944, 1176, 1478, 1665, 1749, 1811, 2025
TspGWI ACGGA 1 cut(s) 755
TspRI CASTG 3 cut(s) 597, 760, 2011
Van91I CCANNNNNTGG 1 cut(s) 267
VpaK11BI GGWCC 2 cut(s) 659, 1354
XapI RAATTY 3 cut(s) 1205, 1330, 1484
XceI RCATGY 1 cut(s) 193
XcmI CCANNNNNNNNNTGG 2 cut(s) 215, 754
XmiI GTMKAC 1 cut(s) 1853
XspI CTAG 4 cut(s) 915, 1124, 1151, 1776
ZrmI AGTACT 2 cut(s) 230, 628
Zsp2I ATGCAT 2 cut(s) 67, 1648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.