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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 438 |
| AfaI | GTAC | 1 cut(s) | 534 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 189, 428, 446 |
| AgsI | TTSAA | 1 cut(s) | 73 |
| AhlI | ACTAGT | 1 cut(s) | 410 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AluBI | AGCT | 3 cut(s) | 122, 167, 239 |
| AluI | AGCT | 3 cut(s) | 122, 167, 239 |
| Alw21I | GWGCWC | 1 cut(s) | 418 |
| AoxI | GGCC | 1 cut(s) | 448 |
| ApeKI | GCWGC | 2 cut(s) | 239, 467 |
| AspA2I | CCTAGG | 1 cut(s) | 440 |
| AspS9I | GGNCC | 2 cut(s) | 431, 449 |
| AsuHPI | GGTGA | 2 cut(s) | 54, 81 |
| AvaII | GGWCC | 1 cut(s) | 431 |
| AvrII | CCTAGG | 1 cut(s) | 440 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 328, 360 |
| BbsI | GAAGAC | 1 cut(s) | 291 |
| Bbv12I | GWGCWC | 1 cut(s) | 418 |
| BbvI | GCAGC | 2 cut(s) | 226, 454 |
| BccI | CCATC | 2 cut(s) | 377, 512 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BclI | TGATCA | 1 cut(s) | 154 |
| BcuI | ACTAGT | 1 cut(s) | 410 |
| BfaI | CTAG | 6 cut(s) | 207, 248, 411, 423, 441, 473 |
| BfmI | CTRYAG | 1 cut(s) | 240 |
| BisI | GCNGC | 2 cut(s) | 240, 468 |
| BlnI | CCTAGG | 1 cut(s) | 440 |
| BlsI | GCNGC | 2 cut(s) | 241, 469 |
| BmcAI | AGTACT | 1 cut(s) | 534 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| Bme18I | GGWCC | 1 cut(s) | 431 |
| BmgT120I | GGNCC | 2 cut(s) | 431, 449 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 1 cut(s) | 472 |
| BpiI | GAAGAC | 1 cut(s) | 291 |
| BpuEI | CTTGAG | 1 cut(s) | 169 |
| BsaJI | CCNNGG | 1 cut(s) | 440 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 400, 430 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 189, 428, 446 |
| Bse1I | ACTGG | 2 cut(s) | 114, 530 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseDI | CCNNGG | 1 cut(s) | 440 |
| BseGI | GGATG | 1 cut(s) | 487 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 189, 428, 446 |
| BseNI | ACTGG | 2 cut(s) | 114, 530 |
| BseRI | GAGGAG | 4 cut(s) | 172, 301, 386, 389 |
| BseXI | GCAGC | 2 cut(s) | 226, 454 |
| BseYI | CCCAGC | 1 cut(s) | 546 |
| BshFI | GGCC | 1 cut(s) | 450 |
| BsiHKAI | GWGCWC | 1 cut(s) | 418 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 189, 428, 446 |
| BsnI | GGCC | 1 cut(s) | 450 |
| Bsp1286I | GDGCHC | 1 cut(s) | 418 |
| Bsp143I | GATC | 1 cut(s) | 154 |
| BspANI | GGCC | 1 cut(s) | 450 |
| BspHI | TCATGA | 1 cut(s) | 304 |
| BspMAI | CTGCAG | 1 cut(s) | 244 |
| BspQI | GCTCTTC | 1 cut(s) | 24 |
| BsrI | ACTGG | 2 cut(s) | 114, 530 |
| BssECI | CCNNGG | 1 cut(s) | 440 |
| BssMI | GATC | 1 cut(s) | 154 |
| BssT1I | CCWWGG | 1 cut(s) | 440 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst6I | CTCTTC | 2 cut(s) | 24, 78 |
| BstDEI | CTNAG | 2 cut(s) | 18, 265 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 187 |
| BstF5I | GGATG | 1 cut(s) | 487 |
| BstKTI | GATC | 1 cut(s) | 157 |
| BstMBI | GATC | 1 cut(s) | 154 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSFI | CTRYAG | 1 cut(s) | 240 |
| BstV1I | GCAGC | 2 cut(s) | 226, 454 |
| BstV2I | GAAGAC | 1 cut(s) | 291 |
| BsuRI | GGCC | 1 cut(s) | 450 |
| BtsCI | GGATG | 1 cut(s) | 487 |
| BtsI | GCAGTG | 1 cut(s) | 249 |
| BtsIMutI | CAGTG | 2 cut(s) | 121, 249 |
| CciI | TCATGA | 1 cut(s) | 304 |
| Cfr13I | GGNCC | 2 cut(s) | 431, 449 |
| Csp6I | GTAC | 1 cut(s) | 533 |
| CviAII | CATG | 2 cut(s) | 305, 380 |
| CviJI | RGCY | 6 cut(s) | 34, 122, 167, 239, 278, 450 |
| CviKI_1 | RGCY | 6 cut(s) | 34, 122, 167, 239, 278, 450 |
| CviQI | GTAC | 1 cut(s) | 533 |
| DdeI | CTNAG | 2 cut(s) | 18, 265 |
| DpnI | GATC | 1 cut(s) | 156 |
| DpnII | GATC | 1 cut(s) | 154 |
| Eam1104I | CTCTTC | 2 cut(s) | 24, 78 |
| EarI | CTCTTC | 2 cut(s) | 24, 78 |
| Eco130I | CCWWGG | 1 cut(s) | 440 |
| Eco47I | GGWCC | 1 cut(s) | 431 |
| Eco57I | CTGAAG | 1 cut(s) | 438 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 187 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoT14I | CCWWGG | 1 cut(s) | 440 |
| ErhI | CCWWGG | 1 cut(s) | 440 |
| FaeI | CATG | 2 cut(s) | 308, 383 |
| FaiI | YATR | 7 cut(s) | 9, 14, 195, 212, 306, 330, 381 |
| FatI | CATG | 2 cut(s) | 304, 379 |
| FbaI | TGATCA | 1 cut(s) | 154 |
| Fnu4HI | GCNGC | 2 cut(s) | 240, 468 |
| FokI | GGATG | 1 cut(s) | 494 |
| Fsp4HI | GCNGC | 2 cut(s) | 240, 468 |
| FspBI | CTAG | 6 cut(s) | 207, 248, 411, 423, 441, 473 |
| GluI | GCNGC | 2 cut(s) | 240, 468 |
| GsaI | CCCAGC | 1 cut(s) | 550 |
| HaeIII | GGCC | 1 cut(s) | 450 |
| Hin1II | CATG | 2 cut(s) | 308, 383 |
| HinfI | GANTC | 5 cut(s) | 86, 202, 287, 308, 458 |
| HphI | GGTGA | 2 cut(s) | 54, 81 |
| Hpy166II | GTNNAC | 2 cut(s) | 46, 434 |
| Hpy188I | TCNGA | 3 cut(s) | 150, 316, 457 |
| Hpy188III | TCNNGA | 2 cut(s) | 305, 473 |
| Hpy8I | GTNNAC | 2 cut(s) | 46, 434 |
| HpyAV | CCTTC | 2 cut(s) | 354, 462 |
| HpyCH4V | TGCA | 1 cut(s) | 242 |
| HpyF3I | CTNAG | 2 cut(s) | 18, 265 |
| Hsp92II | CATG | 2 cut(s) | 308, 383 |
| Ksp22I | TGATCA | 1 cut(s) | 154 |
| Kzo9I | GATC | 1 cut(s) | 154 |
| LguI | GCTCTTC | 1 cut(s) | 24 |
| LmnI | GCTCC | 3 cut(s) | 100, 376, 421 |
| LpnPI | CCDG | 8 cut(s) | 34, 61, 116, 125, 127, 143, 543, 560 |
| Lsp1109I | GCAGC | 2 cut(s) | 226, 454 |
| LweI | GCATC | 1 cut(s) | 472 |
| MaeI | CTAG | 6 cut(s) | 207, 248, 411, 423, 441, 473 |
| MaeIII | GTNAC | 7 cut(s) | 60, 87, 109, 260, 268, 335, 487 |
| MalI | GATC | 1 cut(s) | 156 |
| MboI | GATC | 1 cut(s) | 154 |
| MboII | GAAGA | 4 cut(s) | 41, 95, 296, 521 |
| MhlI | GDGCHC | 1 cut(s) | 418 |
| MluCI | AATT | 2 cut(s) | 222, 476 |
| MlyI | GAGTC | 4 cut(s) | 95, 211, 281, 302 |
| MmeI | TCCRAC | 1 cut(s) | 537 |
| MseI | TTAA | 1 cut(s) | 126 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| NdeII | GATC | 1 cut(s) | 154 |
| NlaIII | CATG | 2 cut(s) | 308, 383 |
| NmuCI | GTSAC | 4 cut(s) | 60, 87, 109, 260 |
| PagI | TCATGA | 1 cut(s) | 304 |
| PciSI | GCTCTTC | 1 cut(s) | 24 |
| PfeI | GAWTC | 1 cut(s) | 458 |
| PkrI | GCNGC | 2 cut(s) | 241, 469 |
| PleI | GAGTC | 4 cut(s) | 94, 210, 281, 302 |
| PpsI | GAGTC | 4 cut(s) | 94, 210, 281, 302 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspFI | CCCAGC | 1 cut(s) | 546 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspPI | GGNCC | 2 cut(s) | 431, 449 |
| PstI | CTGCAG | 1 cut(s) | 244 |
| RsaI | GTAC | 1 cut(s) | 534 |
| RsaNI | GTAC | 1 cut(s) | 533 |
| SapI | GCTCTTC | 1 cut(s) | 24 |
| SaqAI | TTAA | 1 cut(s) | 126 |
| SatI | GCNGC | 2 cut(s) | 240, 468 |
| Sau3AI | GATC | 1 cut(s) | 154 |
| Sau96I | GGNCC | 2 cut(s) | 431, 449 |
| ScaI | AGTACT | 1 cut(s) | 534 |
| SchI | GAGTC | 4 cut(s) | 95, 211, 281, 302 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 1 cut(s) | 418 |
| SfaNI | GCATC | 1 cut(s) | 472 |
| SfcI | CTRYAG | 1 cut(s) | 240 |
| SinI | GGWCC | 1 cut(s) | 431 |
| SmlI | CTYRAG | 1 cut(s) | 184 |
| SmoI | CTYRAG | 1 cut(s) | 184 |
| SpeI | ACTAGT | 1 cut(s) | 410 |
| Sse9I | AATT | 2 cut(s) | 222, 476 |
| SspI | AATATT | 1 cut(s) | 175 |
| SspMI | CTAG | 6 cut(s) | 207, 248, 411, 423, 441, 473 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| StyI | CCWWGG | 1 cut(s) | 440 |
| TaqI | TCGA | 1 cut(s) | 290 |
| TasI | AATT | 2 cut(s) | 222, 476 |
| TatI | WGTACW | 1 cut(s) | 532 |
| TfiI | GAWTC | 1 cut(s) | 458 |
| Tru1I | TTAA | 1 cut(s) | 126 |
| Tru9I | TTAA | 1 cut(s) | 126 |
| TscAI | CASTG | 2 cut(s) | 121, 249 |
| TseFI | GTSAC | 4 cut(s) | 60, 87, 109, 260 |
| TseI | GCWGC | 2 cut(s) | 239, 467 |
| Tsp45I | GTSAC | 4 cut(s) | 60, 87, 109, 260 |
| TspDTI | ATGAA | 2 cut(s) | 177, 297 |
| TspRI | CASTG | 2 cut(s) | 121, 249 |
| VpaK11BI | GGWCC | 1 cut(s) | 431 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 187 |
| XbaI | TCTAGA | 1 cut(s) | 472 |
| XmaJI | CCTAGG | 1 cut(s) | 440 |
| XspI | CTAG | 6 cut(s) | 207, 248, 411, 423, 441, 473 |
| ZrmI | AGTACT | 1 cut(s) | 534 |