Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 29 - 64 | 1.2e-08 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 261 |
| Acc36I | ACCTGC | 2 cut(s) | 234, 268 |
| AccI | GTMKAC | 2 cut(s) | 253, 333 |
| AciI | CCGC | 1 cut(s) | 479 |
| AclWI | GGATC | 2 cut(s) | 59, 318 |
| AcsI | RAATTY | 1 cut(s) | 17 |
| AcuI | CTGAAG | 1 cut(s) | 416 |
| AfaI | GTAC | 1 cut(s) | 198 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 400, 454 |
| AhlI | ACTAGT | 1 cut(s) | 79 |
| AluBI | AGCT | 1 cut(s) | 185 |
| AluI | AGCT | 1 cut(s) | 185 |
| Alw26I | GTCTC | 4 cut(s) | 140, 206, 224, 252 |
| AlwI | GGATC | 2 cut(s) | 59, 318 |
| Ama87I | CYCGRG | 1 cut(s) | 33 |
| ApoI | RAATTY | 1 cut(s) | 17 |
| AspS9I | GGNCC | 1 cut(s) | 371 |
| AsuII | TTCGAA | 1 cut(s) | 88 |
| AvaI | CYCGRG | 1 cut(s) | 33 |
| AvaII | GGWCC | 1 cut(s) | 371 |
| BbsI | GAAGAC | 1 cut(s) | 97 |
| BccI | CCATC | 1 cut(s) | 382 |
| BcoDI | GTCTC | 4 cut(s) | 140, 206, 224, 252 |
| BcuI | ACTAGT | 1 cut(s) | 79 |
| BfaI | CTAG | 2 cut(s) | 80, 345 |
| BfmI | CTRYAG | 1 cut(s) | 291 |
| BfuAI | ACCTGC | 2 cut(s) | 234, 268 |
| Bme18I | GGWCC | 1 cut(s) | 371 |
| BmeT110I | CYCGRG | 1 cut(s) | 33 |
| BmgT120I | GGNCC | 1 cut(s) | 371 |
| BmiI | GGNNCC | 1 cut(s) | 372 |
| BpiI | GAAGAC | 1 cut(s) | 97 |
| Bpu14I | TTCGAA | 1 cut(s) | 88 |
| BsaBI | GATNNNNATC | 1 cut(s) | 51 |
| BsaI | GGTCTC | 1 cut(s) | 252 |
| BsaWI | WCCGGW | 1 cut(s) | 400 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 400, 454 |
| Bse8I | GATNNNNATC | 1 cut(s) | 51 |
| BseJI | GATNNNNATC | 1 cut(s) | 51 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 400, 454 |
| BseRI | GAGGAG | 2 cut(s) | 242, 387 |
| BsiHKCI | CYCGRG | 1 cut(s) | 33 |
| BsiSI | CCGG | 1 cut(s) | 401 |
| BslFI | GGGAC | 1 cut(s) | 183 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 400, 454 |
| BsmAI | GTCTC | 4 cut(s) | 140, 206, 224, 252 |
| BsmBI | CGTCTC | 1 cut(s) | 140 |
| BsmFI | GGGAC | 1 cut(s) | 183 |
| Bso31I | GGTCTC | 1 cut(s) | 252 |
| BsoBI | CYCGRG | 1 cut(s) | 33 |
| Bsp119I | TTCGAA | 1 cut(s) | 88 |
| Bsp143I | GATC | 3 cut(s) | 52, 64, 310 |
| BspACI | CCGC | 1 cut(s) | 479 |
| BspLI | GGNNCC | 1 cut(s) | 372 |
| BspMI | ACCTGC | 2 cut(s) | 234, 268 |
| BspPI | GGATC | 2 cut(s) | 59, 318 |
| BspT104I | TTCGAA | 1 cut(s) | 88 |
| BspTNI | GGTCTC | 1 cut(s) | 252 |
| BssMI | GATC | 3 cut(s) | 52, 64, 310 |
| Bst6I | CTCTTC | 1 cut(s) | 435 |
| BstBI | TTCGAA | 1 cut(s) | 88 |
| BstC8I | GCNNGC | 2 cut(s) | 187, 385 |
| BstDEI | CTNAG | 2 cut(s) | 7, 351 |
| BstKTI | GATC | 3 cut(s) | 55, 67, 313 |
| BstMAI | GTCTC | 4 cut(s) | 140, 206, 224, 252 |
| BstMBI | GATC | 3 cut(s) | 52, 64, 310 |
| BstSFI | CTRYAG | 1 cut(s) | 291 |
| BstV2I | GAAGAC | 1 cut(s) | 97 |
| BtsIMutI | CAGTG | 1 cut(s) | 312 |
| BveI | ACCTGC | 2 cut(s) | 234, 268 |
| Cac8I | GCNNGC | 2 cut(s) | 187, 385 |
| Cfr13I | GGNCC | 1 cut(s) | 371 |
| Csp6I | GTAC | 1 cut(s) | 197 |
| CviAII | CATG | 3 cut(s) | 60, 176, 314 |
| CviJI | RGCY | 3 cut(s) | 126, 185, 436 |
| CviKI_1 | RGCY | 3 cut(s) | 126, 185, 436 |
| CviQI | GTAC | 1 cut(s) | 197 |
| DdeI | CTNAG | 2 cut(s) | 7, 351 |
| DpnI | GATC | 3 cut(s) | 54, 66, 312 |
| DpnII | GATC | 3 cut(s) | 52, 64, 310 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 261 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 261 |
| Eam1104I | CTCTTC | 1 cut(s) | 435 |
| EarI | CTCTTC | 1 cut(s) | 435 |
| Eco31I | GGTCTC | 1 cut(s) | 252 |
| Eco47I | GGWCC | 1 cut(s) | 371 |
| Eco57I | CTGAAG | 1 cut(s) | 416 |
| Eco88I | CYCGRG | 1 cut(s) | 33 |
| Esp3I | CGTCTC | 1 cut(s) | 140 |
| FaeI | CATG | 3 cut(s) | 63, 179, 317 |
| FaiI | YATR | 6 cut(s) | 61, 129, 177, 293, 315, 363 |
| FaqI | GGGAC | 1 cut(s) | 183 |
| FatI | CATG | 3 cut(s) | 59, 175, 313 |
| FblI | GTMKAC | 2 cut(s) | 253, 333 |
| FspBI | CTAG | 2 cut(s) | 80, 345 |
| HapII | CCGG | 1 cut(s) | 401 |
| Hin1II | CATG | 3 cut(s) | 63, 179, 317 |
| HincII | GTYRAC | 1 cut(s) | 254 |
| HindII | GTYRAC | 1 cut(s) | 254 |
| HinfI | GANTC | 2 cut(s) | 302, 335 |
| HpaII | CCGG | 1 cut(s) | 401 |
| Hpy166II | GTNNAC | 2 cut(s) | 254, 334 |
| Hpy8I | GTNNAC | 2 cut(s) | 254, 334 |
| Hpy99I | CGWCG | 3 cut(s) | 255, 258, 267 |
| HpyCH4IV | ACGT | 2 cut(s) | 133, 256 |
| HpyCH4V | TGCA | 2 cut(s) | 189, 383 |
| HpyF3I | CTNAG | 2 cut(s) | 7, 351 |
| HpySE526I | ACGT | 2 cut(s) | 133, 256 |
| Hsp92II | CATG | 3 cut(s) | 63, 179, 317 |
| Kzo9I | GATC | 3 cut(s) | 52, 64, 310 |
| LmnI | GCTCC | 1 cut(s) | 223 |
| LpnPI | CCDG | 5 cut(s) | 59, 229, 263, 414, 477 |
| MaeI | CTAG | 2 cut(s) | 80, 345 |
| MaeII | ACGT | 2 cut(s) | 133, 256 |
| MaeIII | GTNAC | 2 cut(s) | 178, 459 |
| MalI | GATC | 3 cut(s) | 54, 66, 312 |
| MboI | GATC | 3 cut(s) | 52, 64, 310 |
| MboII | GAAGA | 3 cut(s) | 102, 278, 422 |
| MluCI | AATT | 2 cut(s) | 17, 191 |
| MlyI | GAGTC | 1 cut(s) | 329 |
| MnlI | CCTC | 6 cut(s) | 112, 220, 361, 405, 408, 448 |
| MseI | TTAA | 2 cut(s) | 297, 471 |
| MspI | CCGG | 1 cut(s) | 401 |
| NdeII | GATC | 3 cut(s) | 52, 64, 310 |
| NlaIII | CATG | 3 cut(s) | 63, 179, 317 |
| NlaIV | GGNNCC | 1 cut(s) | 372 |
| NspV | TTCGAA | 1 cut(s) | 88 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 259, 262 |
| PfeI | GAWTC | 1 cut(s) | 302 |
| PflFI | GACNNNGTC | 1 cut(s) | 258 |
| PleI | GAGTC | 1 cut(s) | 329 |
| PpsI | GAGTC | 1 cut(s) | 329 |
| PspN4I | GGNNCC | 1 cut(s) | 372 |
| PspPI | GGNCC | 1 cut(s) | 371 |
| PsyI | GACNNNGTC | 1 cut(s) | 258 |
| RsaI | GTAC | 1 cut(s) | 198 |
| RsaNI | GTAC | 1 cut(s) | 197 |
| SalI | GTCGAC | 1 cut(s) | 252 |
| SaqAI | TTAA | 2 cut(s) | 297, 471 |
| Sau3AI | GATC | 3 cut(s) | 52, 64, 310 |
| Sau96I | GGNCC | 1 cut(s) | 371 |
| SchI | GAGTC | 1 cut(s) | 329 |
| SetI | ASST | 8 cut(s) | 123, 136, 187, 248, 259, 282, 459, 466 |
| SfcI | CTRYAG | 1 cut(s) | 291 |
| SfuI | TTCGAA | 1 cut(s) | 88 |
| SgrDI | CGTCGACG | 1 cut(s) | 252 |
| SinI | GGWCC | 1 cut(s) | 371 |
| SpeI | ACTAGT | 1 cut(s) | 79 |
| Sse9I | AATT | 2 cut(s) | 17, 191 |
| SsiI | CCGC | 1 cut(s) | 479 |
| SspMI | CTAG | 2 cut(s) | 80, 345 |
| TaiI | ACGT | 2 cut(s) | 136, 259 |
| TaqI | TCGA | 2 cut(s) | 88, 253 |
| TaqII | GACCGA | 1 cut(s) | 11 |
| TasI | AATT | 2 cut(s) | 17, 191 |
| TfiI | GAWTC | 1 cut(s) | 302 |
| Tru1I | TTAA | 2 cut(s) | 297, 471 |
| Tru9I | TTAA | 2 cut(s) | 297, 471 |
| TscAI | CASTG | 1 cut(s) | 312 |
| TspDTI | ATGAA | 1 cut(s) | 144 |
| TspRI | CASTG | 1 cut(s) | 312 |
| Tth111I | GACNNNGTC | 1 cut(s) | 258 |
| VpaK11BI | GGWCC | 1 cut(s) | 371 |
| XapI | RAATTY | 1 cut(s) | 17 |
| XmiI | GTMKAC | 2 cut(s) | 253, 333 |
| XspI | CTAG | 2 cut(s) | 80, 345 |