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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 418 |
| AciI | CCGC | 2 cut(s) | 5, 588 |
| AclWI | GGATC | 2 cut(s) | 402, 403 |
| AcsI | RAATTY | 3 cut(s) | 138, 641, 767 |
| AfaI | GTAC | 2 cut(s) | 474, 526 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 159, 418, 710 |
| AgeI | ACCGGT | 1 cut(s) | 100 |
| AgsI | TTSAA | 4 cut(s) | 112, 366, 522, 626 |
| AjnI | CCWGG | 2 cut(s) | 402, 478 |
| AluBI | AGCT | 3 cut(s) | 554, 710, 734 |
| AluI | AGCT | 3 cut(s) | 554, 710, 734 |
| Alw26I | GTCTC | 1 cut(s) | 133 |
| AlwI | GGATC | 2 cut(s) | 402, 403 |
| AoxI | GGCC | 1 cut(s) | 351 |
| ApeKI | GCWGC | 2 cut(s) | 422, 689 |
| ApoI | RAATTY | 3 cut(s) | 138, 641, 767 |
| AsiGI | ACCGGT | 1 cut(s) | 100 |
| AspS9I | GGNCC | 3 cut(s) | 335, 352, 584 |
| AsuC2I | CCSGG | 1 cut(s) | 161 |
| AsuHPI | GGTGA | 3 cut(s) | 418, 442, 637 |
| AvaII | GGWCC | 2 cut(s) | 335, 584 |
| BanII | GRGCYC | 2 cut(s) | 153, 742 |
| BbsI | GAAGAC | 1 cut(s) | 297 |
| BbvCI | CCTCAGC | 1 cut(s) | 51 |
| BbvI | GCAGC | 2 cut(s) | 434, 676 |
| BciT130I | CCWGG | 2 cut(s) | 404, 480 |
| BclI | TGATCA | 1 cut(s) | 607 |
| BcnI | CCSGG | 1 cut(s) | 161 |
| BcoDI | GTCTC | 1 cut(s) | 133 |
| BfaI | CTAG | 4 cut(s) | 167, 216, 371, 735 |
| BglII | AGATCT | 1 cut(s) | 94 |
| BisI | GCNGC | 2 cut(s) | 423, 690 |
| BlsI | GCNGC | 2 cut(s) | 424, 691 |
| Bme1390I | CCNGG | 3 cut(s) | 161, 404, 480 |
| Bme18I | GGWCC | 2 cut(s) | 335, 584 |
| BmgT120I | GGNCC | 3 cut(s) | 335, 352, 584 |
| BmiI | GGNNCC | 6 cut(s) | 105, 150, 336, 354, 585, 586 |
| BmrFI | CCNGG | 3 cut(s) | 161, 404, 480 |
| BmrI | ACTGGG | 1 cut(s) | 644 |
| BmsI | GCATC | 2 cut(s) | 164, 308 |
| BmuI | ACTGGG | 1 cut(s) | 644 |
| BpiI | GAAGAC | 1 cut(s) | 297 |
| BpmI | CTGGAG | 1 cut(s) | 732 |
| Bpu10I | CCTNAGC | 2 cut(s) | 51, 267 |
| BpuMI | CCSGG | 1 cut(s) | 161 |
| BsaBI | GATNNNNATC | 1 cut(s) | 209 |
| BsaI | GGTCTC | 1 cut(s) | 133 |
| BsaJI | CCNNGG | 2 cut(s) | 160, 309 |
| BsaWI | WCCGGW | 1 cut(s) | 100 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 13, 43, 287, 317 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 159, 418, 710 |
| Bse118I | RCCGGY | 1 cut(s) | 100 |
| Bse1I | ACTGG | 2 cut(s) | 338, 650 |
| Bse3DI | GCAATG | 1 cut(s) | 260 |
| Bse8I | GATNNNNATC | 1 cut(s) | 209 |
| BseBI | CCWGG | 2 cut(s) | 404, 480 |
| BseDI | CCNNGG | 2 cut(s) | 160, 309 |
| BseGI | GGATG | 1 cut(s) | 722 |
| BseJI | GATNNNNATC | 1 cut(s) | 209 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 159, 418, 710 |
| BseMI | GCAATG | 1 cut(s) | 260 |
| BseMII | CTCAG | 3 cut(s) | 42, 258, 362 |
| BseNI | ACTGG | 2 cut(s) | 338, 650 |
| BseRI | GAGGAG | 3 cut(s) | 18, 161, 398 |
| BseXI | GCAGC | 2 cut(s) | 434, 676 |
| BshFI | GGCC | 1 cut(s) | 353 |
| BshTI | ACCGGT | 1 cut(s) | 100 |
| BsiSI | CCGG | 2 cut(s) | 101, 160 |
| BslFI | GGGAC | 2 cut(s) | 177, 570 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 159, 418, 710 |
| BsmAI | GTCTC | 1 cut(s) | 133 |
| BsmFI | GGGAC | 2 cut(s) | 177, 570 |
| BsnI | GGCC | 1 cut(s) | 353 |
| Bso31I | GGTCTC | 1 cut(s) | 133 |
| Bsp1286I | GDGCHC | 2 cut(s) | 153, 742 |
| Bsp143I | GATC | 4 cut(s) | 94, 394, 408, 607 |
| BspACI | CCGC | 2 cut(s) | 5, 588 |
| BspANI | GGCC | 1 cut(s) | 353 |
| BspCNI | CTCAG | 3 cut(s) | 43, 259, 361 |
| BspLI | GGNNCC | 6 cut(s) | 105, 150, 336, 354, 585, 586 |
| BspPI | GGATC | 2 cut(s) | 402, 403 |
| BspTNI | GGTCTC | 1 cut(s) | 133 |
| BsrDI | GCAATG | 1 cut(s) | 260 |
| BsrFI | RCCGGY | 1 cut(s) | 100 |
| BsrI | ACTGG | 2 cut(s) | 338, 650 |
| BssAI | RCCGGY | 1 cut(s) | 100 |
| BssECI | CCNNGG | 2 cut(s) | 160, 309 |
| BssMI | GATC | 4 cut(s) | 94, 394, 408, 607 |
| BssT1I | CCWWGG | 1 cut(s) | 309 |
| Bst2UI | CCWGG | 2 cut(s) | 404, 480 |
| Bst4CI | ACNGT | 2 cut(s) | 11, 292 |
| Bst6I | CTCTTC | 2 cut(s) | 111, 463 |
| BstC8I | GCNNGC | 1 cut(s) | 687 |
| BstDEI | CTNAG | 4 cut(s) | 51, 267, 348, 467 |
| BstF5I | GGATG | 1 cut(s) | 722 |
| BstKTI | GATC | 4 cut(s) | 97, 397, 411, 610 |
| BstMAI | GTCTC | 1 cut(s) | 133 |
| BstMBI | GATC | 4 cut(s) | 94, 394, 408, 607 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 62, 350 |
| BstNI | CCWGG | 2 cut(s) | 404, 480 |
| BstSCI | CCNGG | 3 cut(s) | 159, 402, 478 |
| BstV1I | GCAGC | 2 cut(s) | 434, 676 |
| BstV2I | GAAGAC | 1 cut(s) | 297 |
| BstX2I | RGATCY | 1 cut(s) | 94 |
| BstYI | RGATCY | 1 cut(s) | 94 |
| BsuRI | GGCC | 1 cut(s) | 353 |
| BtsCI | GGATG | 1 cut(s) | 722 |
| BtsIMutI | CAGTG | 1 cut(s) | 297 |
| Cac8I | GCNNGC | 1 cut(s) | 687 |
| Cfr10I | RCCGGY | 1 cut(s) | 100 |
| Cfr13I | GGNCC | 3 cut(s) | 335, 352, 584 |
| CsiI | ACCWGGT | 2 cut(s) | 402, 478 |
| Csp6I | GTAC | 2 cut(s) | 473, 525 |
| CspAI | ACCGGT | 1 cut(s) | 100 |
| CviAII | CATG | 2 cut(s) | 599, 614 |
| CviJI | RGCY | 9 cut(s) | 151, 221, 328, 353, 554, 689, 710, 734, 740 |
| CviKI_1 | RGCY | 9 cut(s) | 151, 221, 328, 353, 554, 689, 710, 734, 740 |
| CviQI | GTAC | 2 cut(s) | 473, 525 |
| DdeI | CTNAG | 4 cut(s) | 51, 267, 348, 467 |
| DpnI | GATC | 4 cut(s) | 96, 396, 410, 609 |
| DpnII | GATC | 4 cut(s) | 94, 394, 408, 607 |
| Eam1104I | CTCTTC | 2 cut(s) | 111, 463 |
| EarI | CTCTTC | 2 cut(s) | 111, 463 |
| EciI | GGCGGA | 1 cut(s) | 20 |
| Eco130I | CCWWGG | 1 cut(s) | 309 |
| Eco24I | GRGCYC | 2 cut(s) | 153, 742 |
| Eco31I | GGTCTC | 1 cut(s) | 133 |
| Eco47I | GGWCC | 2 cut(s) | 335, 584 |
| EcoO109I | RGGNCCY | 2 cut(s) | 352, 584 |
| EcoRI | GAATTC | 1 cut(s) | 641 |
| EcoRII | CCWGG | 2 cut(s) | 402, 478 |
| EcoT14I | CCWWGG | 1 cut(s) | 309 |
| EcoT38I | GRGCYC | 2 cut(s) | 153, 742 |
| ErhI | CCWWGG | 1 cut(s) | 309 |
| FaeI | CATG | 2 cut(s) | 602, 617 |
| FaiI | YATR | 8 cut(s) | 48, 255, 276, 419, 596, 600, 615, 620 |
| FaqI | GGGAC | 2 cut(s) | 177, 570 |
| FatI | CATG | 2 cut(s) | 598, 613 |
| FauI | CCCGC | 1 cut(s) | 595 |
| FbaI | TGATCA | 1 cut(s) | 607 |
| Fnu4HI | GCNGC | 2 cut(s) | 423, 690 |
| FokI | GGATG | 1 cut(s) | 729 |
| FriOI | GRGCYC | 2 cut(s) | 153, 742 |
| Fsp4HI | GCNGC | 2 cut(s) | 423, 690 |
| FspBI | CTAG | 4 cut(s) | 167, 216, 371, 735 |
| GluI | GCNGC | 2 cut(s) | 423, 690 |
| GsuI | CTGGAG | 1 cut(s) | 732 |
| HaeIII | GGCC | 1 cut(s) | 353 |
| HapII | CCGG | 2 cut(s) | 101, 160 |
| Hin1II | CATG | 2 cut(s) | 602, 617 |
| HinfI | GANTC | 3 cut(s) | 68, 210, 257 |
| HpaII | CCGG | 2 cut(s) | 101, 160 |
| HphI | GGTGA | 3 cut(s) | 418, 442, 637 |
| Hpy166II | GTNNAC | 1 cut(s) | 473 |
| Hpy8I | GTNNAC | 1 cut(s) | 473 |
| Hpy99I | CGWCG | 1 cut(s) | 532 |
| HpyAV | CCTTC | 1 cut(s) | 629 |
| HpyCH4III | ACNGT | 2 cut(s) | 11, 292 |
| HpyCH4IV | ACGT | 2 cut(s) | 527, 695 |
| HpyCH4V | TGCA | 6 cut(s) | 65, 177, 344, 516, 700, 748 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 62, 350 |
| HpyF3I | CTNAG | 4 cut(s) | 51, 267, 348, 467 |
| HpySE526I | ACGT | 2 cut(s) | 527, 695 |
| Hsp92II | CATG | 2 cut(s) | 602, 617 |
| KflI | GGGWCCC | 1 cut(s) | 584 |
| Ksp22I | TGATCA | 1 cut(s) | 607 |
| Kzo9I | GATC | 4 cut(s) | 94, 394, 408, 607 |
| LmnI | GCTCC | 4 cut(s) | 148, 314, 385, 559 |
| Lsp1109I | GCAGC | 2 cut(s) | 434, 676 |
| LweI | GCATC | 2 cut(s) | 164, 308 |
| MabI | ACCWGGT | 2 cut(s) | 402, 478 |
| MaeI | CTAG | 4 cut(s) | 167, 216, 371, 735 |
| MaeII | ACGT | 2 cut(s) | 527, 695 |
| MaeIII | GTNAC | 1 cut(s) | 11 |
| MalI | GATC | 4 cut(s) | 96, 396, 410, 609 |
| MboI | GATC | 4 cut(s) | 94, 394, 408, 607 |
| MboII | GAAGA | 7 cut(s) | 128, 296, 297, 450, 453, 587, 644 |
| MflI | RGATCY | 1 cut(s) | 94 |
| MhlI | GDGCHC | 2 cut(s) | 153, 742 |
| MluCI | AATT | 7 cut(s) | 79, 138, 184, 447, 517, 641, 767 |
| MseI | TTAA | 2 cut(s) | 681, 775 |
| MslI | CAYNNNNRTG | 1 cut(s) | 45 |
| MspI | CCGG | 2 cut(s) | 101, 160 |
| MspR9I | CCNGG | 3 cut(s) | 161, 404, 480 |
| MvaI | CCWGG | 2 cut(s) | 404, 480 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 62, 350 |
| NciI | CCSGG | 1 cut(s) | 161 |
| NdeII | GATC | 4 cut(s) | 94, 394, 408, 607 |
| NlaIII | CATG | 2 cut(s) | 602, 617 |
| NlaIV | GGNNCC | 6 cut(s) | 105, 150, 336, 354, 585, 586 |
| PfeI | GAWTC | 3 cut(s) | 68, 210, 257 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 418 |
| PinAI | ACCGGT | 1 cut(s) | 100 |
| PkrI | GCNGC | 2 cut(s) | 424, 691 |
| PpuMI | RGGWCCY | 1 cut(s) | 584 |
| Psp5II | RGGWCCY | 1 cut(s) | 584 |
| Psp6I | CCWGG | 2 cut(s) | 402, 478 |
| PspGI | CCWGG | 2 cut(s) | 402, 478 |
| PspN4I | GGNNCC | 6 cut(s) | 105, 150, 336, 354, 585, 586 |
| PspPI | GGNCC | 3 cut(s) | 335, 352, 584 |
| PspPPI | RGGWCCY | 1 cut(s) | 584 |
| PsuI | RGATCY | 1 cut(s) | 94 |
| RsaI | GTAC | 2 cut(s) | 474, 526 |
| RsaNI | GTAC | 2 cut(s) | 473, 525 |
| RseI | CAYNNNNRTG | 1 cut(s) | 45 |
| SaqAI | TTAA | 2 cut(s) | 681, 775 |
| SatI | GCNGC | 2 cut(s) | 423, 690 |
| Sau3AI | GATC | 4 cut(s) | 94, 394, 408, 607 |
| Sau96I | GGNCC | 3 cut(s) | 335, 352, 584 |
| ScrFI | CCNGG | 3 cut(s) | 161, 404, 480 |
| SduI | GDGCHC | 2 cut(s) | 153, 742 |
| SexAI | ACCWGGT | 2 cut(s) | 402, 478 |
| SfaNI | GCATC | 2 cut(s) | 164, 308 |
| SinI | GGWCC | 2 cut(s) | 335, 584 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 45 |
| Sse9I | AATT | 7 cut(s) | 79, 138, 184, 447, 517, 641, 767 |
| SsiI | CCGC | 2 cut(s) | 5, 588 |
| SspMI | CTAG | 4 cut(s) | 167, 216, 371, 735 |
| StyD4I | CCNGG | 3 cut(s) | 159, 402, 478 |
| StyI | CCWWGG | 1 cut(s) | 309 |
| TaaI | ACNGT | 2 cut(s) | 11, 292 |
| TaiI | ACGT | 2 cut(s) | 530, 698 |
| TasI | AATT | 7 cut(s) | 79, 138, 184, 447, 517, 641, 767 |
| TfiI | GAWTC | 3 cut(s) | 68, 210, 257 |
| Tru1I | TTAA | 2 cut(s) | 681, 775 |
| Tru9I | TTAA | 2 cut(s) | 681, 775 |
| TscAI | CASTG | 1 cut(s) | 297 |
| TseI | GCWGC | 2 cut(s) | 422, 689 |
| TspDTI | ATGAA | 1 cut(s) | 270 |
| TspRI | CASTG | 1 cut(s) | 297 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 418 |
| VpaK11BI | GGWCC | 2 cut(s) | 335, 584 |
| XapI | RAATTY | 3 cut(s) | 138, 641, 767 |
| XspI | CTAG | 4 cut(s) | 167, 216, 371, 735 |