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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 440 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 244 |
| AccII | CGCG | 5 cut(s) | 493, 501, 528, 547, 555 |
| AciI | CCGC | 4 cut(s) | 493, 501, 528, 555 |
| AclWI | GGATC | 1 cut(s) | 255 |
| AcsI | RAATTY | 1 cut(s) | 203 |
| AcuI | CTGAAG | 2 cut(s) | 390, 618 |
| AcyI | GRCGYC | 1 cut(s) | 91 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 16, 244 |
| AgsI | TTSAA | 2 cut(s) | 25, 275 |
| AjnI | CCWGG | 3 cut(s) | 107, 237, 612 |
| AluBI | AGCT | 2 cut(s) | 30, 626 |
| AluI | AGCT | 2 cut(s) | 30, 626 |
| Alw21I | GWGCWC | 1 cut(s) | 32 |
| Alw26I | GTCTC | 1 cut(s) | 490 |
| AlwI | GGATC | 1 cut(s) | 255 |
| AoxI | GGCC | 2 cut(s) | 18, 228 |
| ApeKI | GCWGC | 1 cut(s) | 643 |
| ApoI | RAATTY | 1 cut(s) | 203 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 216 |
| AspLEI | GCGC | 1 cut(s) | 549 |
| AspS9I | GGNCC | 4 cut(s) | 18, 416, 433, 442 |
| AsuII | TTCGAA | 1 cut(s) | 607 |
| AvaII | GGWCC | 3 cut(s) | 416, 433, 442 |
| AxyI | CCTNAGG | 1 cut(s) | 156 |
| BanII | GRGCYC | 1 cut(s) | 32 |
| Bbv12I | GWGCWC | 1 cut(s) | 32 |
| BceAI | ACGGC | 1 cut(s) | 129 |
| BciT130I | CCWGG | 3 cut(s) | 109, 239, 614 |
| BcoDI | GTCTC | 1 cut(s) | 490 |
| BisI | GCNGC | 1 cut(s) | 644 |
| BlsI | GCNGC | 1 cut(s) | 645 |
| Bme1390I | CCNGG | 3 cut(s) | 109, 239, 614 |
| Bme18I | GGWCC | 3 cut(s) | 416, 433, 442 |
| BmgT120I | GGNCC | 4 cut(s) | 18, 416, 433, 442 |
| BmiI | GGNNCC | 1 cut(s) | 435 |
| BmrFI | CCNGG | 3 cut(s) | 109, 239, 614 |
| Bpu14I | TTCGAA | 1 cut(s) | 607 |
| BpuEI | CTTGAG | 1 cut(s) | 36 |
| BsaHI | GRCGYC | 1 cut(s) | 91 |
| BsaJI | CCNNGG | 2 cut(s) | 107, 613 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 16, 244 |
| Bse21I | CCTNAGG | 1 cut(s) | 156 |
| BseBI | CCWGG | 3 cut(s) | 109, 239, 614 |
| BseDI | CCNNGG | 2 cut(s) | 107, 613 |
| BseGI | GGATG | 3 cut(s) | 305, 348, 466 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 16, 244 |
| BseMII | CTCAG | 5 cut(s) | 123, 170, 216, 501, 528 |
| BseRI | GAGGAG | 2 cut(s) | 144, 312 |
| Bsh1236I | CGCG | 5 cut(s) | 493, 501, 528, 547, 555 |
| BshFI | GGCC | 2 cut(s) | 20, 230 |
| BsiHKAI | GWGCWC | 1 cut(s) | 32 |
| BslFI | GGGAC | 1 cut(s) | 90 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 16, 244 |
| BsmAI | GTCTC | 1 cut(s) | 490 |
| BsmBI | CGTCTC | 1 cut(s) | 490 |
| BsmFI | GGGAC | 1 cut(s) | 90 |
| BsnI | GGCC | 2 cut(s) | 20, 230 |
| Bsp119I | TTCGAA | 1 cut(s) | 607 |
| Bsp1286I | GDGCHC | 1 cut(s) | 32 |
| Bsp143I | GATC | 2 cut(s) | 247, 580 |
| BspACI | CCGC | 4 cut(s) | 493, 501, 528, 555 |
| BspANI | GGCC | 2 cut(s) | 20, 230 |
| BspCNI | CTCAG | 5 cut(s) | 124, 169, 217, 502, 529 |
| BspFNI | CGCG | 5 cut(s) | 493, 501, 528, 547, 555 |
| BspLI | GGNNCC | 1 cut(s) | 435 |
| BspPI | GGATC | 1 cut(s) | 255 |
| BspQI | GCTCTTC | 1 cut(s) | 20 |
| BspT104I | TTCGAA | 1 cut(s) | 607 |
| BssECI | CCNNGG | 2 cut(s) | 107, 613 |
| BssMI | GATC | 2 cut(s) | 247, 580 |
| BssNI | GRCGYC | 1 cut(s) | 91 |
| Bst2UI | CCWGG | 3 cut(s) | 109, 239, 614 |
| Bst6I | CTCTTC | 1 cut(s) | 20 |
| BstACI | GRCGYC | 1 cut(s) | 91 |
| BstBI | TTCGAA | 1 cut(s) | 607 |
| BstC8I | GCNNGC | 1 cut(s) | 641 |
| BstDEI | CTNAG | 5 cut(s) | 132, 156, 225, 510, 537 |
| BstF5I | GGATG | 3 cut(s) | 305, 348, 466 |
| BstFNI | CGCG | 5 cut(s) | 493, 501, 528, 547, 555 |
| BstHHI | GCGC | 1 cut(s) | 549 |
| BstKTI | GATC | 2 cut(s) | 250, 583 |
| BstMAI | GTCTC | 1 cut(s) | 490 |
| BstMBI | GATC | 2 cut(s) | 247, 580 |
| BstNI | CCWGG | 3 cut(s) | 109, 239, 614 |
| BstSCI | CCNGG | 3 cut(s) | 107, 237, 612 |
| BstUI | CGCG | 5 cut(s) | 493, 501, 528, 547, 555 |
| Bsu36I | CCTNAGG | 1 cut(s) | 156 |
| BsuRI | GGCC | 2 cut(s) | 20, 230 |
| BtsCI | GGATG | 3 cut(s) | 305, 348, 466 |
| BtsIMutI | CAGTG | 1 cut(s) | 222 |
| Cac8I | GCNNGC | 1 cut(s) | 641 |
| CfoI | GCGC | 1 cut(s) | 549 |
| Cfr13I | GGNCC | 4 cut(s) | 18, 416, 433, 442 |
| CseI | GACGC | 5 cut(s) | 80, 392, 507, 534, 561 |
| CviAII | CATG | 2 cut(s) | 188, 647 |
| DdeI | CTNAG | 5 cut(s) | 132, 156, 225, 510, 537 |
| DpnI | GATC | 2 cut(s) | 249, 582 |
| DpnII | GATC | 2 cut(s) | 247, 580 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 440 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 440 |
| Eam1104I | CTCTTC | 1 cut(s) | 20 |
| EarI | CTCTTC | 1 cut(s) | 20 |
| Ecl136II | GAGCTC | 1 cut(s) | 30 |
| Eco24I | GRGCYC | 1 cut(s) | 32 |
| Eco47I | GGWCC | 3 cut(s) | 416, 433, 442 |
| Eco53kI | GAGCTC | 1 cut(s) | 30 |
| Eco57I | CTGAAG | 2 cut(s) | 390, 618 |
| Eco81I | CCTNAGG | 1 cut(s) | 156 |
| EcoICRI | GAGCTC | 1 cut(s) | 30 |
| EcoO109I | RGGNCCY | 2 cut(s) | 18, 433 |
| EcoRII | CCWGG | 3 cut(s) | 107, 237, 612 |
| EcoT38I | GRGCYC | 1 cut(s) | 32 |
| Esp3I | CGTCTC | 1 cut(s) | 490 |
| FaeI | CATG | 2 cut(s) | 191, 650 |
| FaiI | YATR | 7 cut(s) | 189, 281, 317, 335, 447, 597, 648 |
| FaqI | GGGAC | 1 cut(s) | 90 |
| FatI | CATG | 2 cut(s) | 187, 646 |
| FauI | CCCGC | 2 cut(s) | 494, 521 |
| Fnu4HI | GCNGC | 1 cut(s) | 644 |
| FokI | GGATG | 3 cut(s) | 312, 335, 473 |
| FriOI | GRGCYC | 1 cut(s) | 32 |
| Fsp4HI | GCNGC | 1 cut(s) | 644 |
| GlaI | GCGC | 1 cut(s) | 548 |
| GluI | GCNGC | 1 cut(s) | 644 |
| HaeIII | GGCC | 2 cut(s) | 20, 230 |
| HgaI | GACGC | 5 cut(s) | 80, 392, 507, 534, 561 |
| HhaI | GCGC | 1 cut(s) | 549 |
| Hin1I | GRCGYC | 1 cut(s) | 91 |
| Hin1II | CATG | 2 cut(s) | 191, 650 |
| Hin6I | GCGC | 1 cut(s) | 547 |
| HinP1I | GCGC | 1 cut(s) | 547 |
| HincII | GTYRAC | 1 cut(s) | 382 |
| HindII | GTYRAC | 1 cut(s) | 382 |
| Hpy166II | GTNNAC | 2 cut(s) | 121, 382 |
| Hpy188I | TCNGA | 2 cut(s) | 133, 454 |
| Hpy188III | TCNNGA | 3 cut(s) | 53, 95, 578 |
| Hpy8I | GTNNAC | 2 cut(s) | 121, 382 |
| HpyAV | CCTTC | 3 cut(s) | 87, 286, 447 |
| HpyCH4V | TGCA | 7 cut(s) | 15, 163, 182, 209, 257, 356, 643 |
| HpyF3I | CTNAG | 5 cut(s) | 132, 156, 225, 510, 537 |
| Hsp92I | GRCGYC | 1 cut(s) | 91 |
| Hsp92II | CATG | 2 cut(s) | 191, 650 |
| HspAI | GCGC | 1 cut(s) | 547 |
| Kzo9I | GATC | 2 cut(s) | 247, 580 |
| LguI | GCTCTTC | 1 cut(s) | 20 |
| MalI | GATC | 2 cut(s) | 249, 582 |
| MboI | GATC | 2 cut(s) | 247, 580 |
| MboII | GAAGA | 3 cut(s) | 37, 224, 624 |
| MhlI | GDGCHC | 1 cut(s) | 32 |
| MluCI | AATT | 4 cut(s) | 203, 242, 340, 603 |
| MmeI | TCCRAC | 1 cut(s) | 443 |
| MnlI | CCTC | 9 cut(s) | 165, 220, 302, 333, 424, 451, 499, 553, 559 |
| MroXI | GAANNNNTTC | 1 cut(s) | 216 |
| MseI | TTAA | 1 cut(s) | 69 |
| MspR9I | CCNGG | 3 cut(s) | 109, 239, 614 |
| MvaI | CCWGG | 3 cut(s) | 109, 239, 614 |
| MvnI | CGCG | 5 cut(s) | 493, 501, 528, 547, 555 |
| NdeII | GATC | 2 cut(s) | 247, 580 |
| NlaIII | CATG | 2 cut(s) | 191, 650 |
| NlaIV | GGNNCC | 1 cut(s) | 435 |
| NspV | TTCGAA | 1 cut(s) | 607 |
| PciSI | GCTCTTC | 1 cut(s) | 20 |
| PdmI | GAANNNNTTC | 1 cut(s) | 216 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 244 |
| PkrI | GCNGC | 1 cut(s) | 645 |
| PpuMI | RGGWCCY | 1 cut(s) | 433 |
| Psp124BI | GAGCTC | 1 cut(s) | 32 |
| Psp5II | RGGWCCY | 1 cut(s) | 433 |
| Psp6I | CCWGG | 3 cut(s) | 107, 237, 612 |
| PspGI | CCWGG | 3 cut(s) | 107, 237, 612 |
| PspN4I | GGNNCC | 1 cut(s) | 435 |
| PspPI | GGNCC | 4 cut(s) | 18, 416, 433, 442 |
| PspPPI | RGGWCCY | 1 cut(s) | 433 |
| SacI | GAGCTC | 1 cut(s) | 32 |
| SapI | GCTCTTC | 1 cut(s) | 20 |
| SaqAI | TTAA | 1 cut(s) | 69 |
| SatI | GCNGC | 1 cut(s) | 644 |
| Sau3AI | GATC | 2 cut(s) | 247, 580 |
| Sau96I | GGNCC | 4 cut(s) | 18, 416, 433, 442 |
| ScrFI | CCNGG | 3 cut(s) | 109, 239, 614 |
| SduI | GDGCHC | 1 cut(s) | 32 |
| SetI | ASST | 3 cut(s) | 32, 162, 628 |
| SfuI | TTCGAA | 1 cut(s) | 607 |
| SinI | GGWCC | 3 cut(s) | 416, 433, 442 |
| SmlI | CTYRAG | 1 cut(s) | 51 |
| SmoI | CTYRAG | 1 cut(s) | 51 |
| Sse9I | AATT | 4 cut(s) | 203, 242, 340, 603 |
| SsiI | CCGC | 4 cut(s) | 493, 501, 528, 555 |
| SstI | GAGCTC | 1 cut(s) | 32 |
| StyD4I | CCNGG | 3 cut(s) | 107, 237, 612 |
| TaqI | TCGA | 2 cut(s) | 571, 607 |
| TaqII | GACCGA | 1 cut(s) | 430 |
| TasI | AATT | 4 cut(s) | 203, 242, 340, 603 |
| Tru1I | TTAA | 1 cut(s) | 69 |
| Tru9I | TTAA | 1 cut(s) | 69 |
| TscAI | CASTG | 1 cut(s) | 229 |
| TseI | GCWGC | 1 cut(s) | 643 |
| TspDTI | ATGAA | 3 cut(s) | 204, 350, 480 |
| TspRI | CASTG | 1 cut(s) | 229 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 244 |
| VpaK11BI | GGWCC | 3 cut(s) | 416, 433, 442 |
| XapI | RAATTY | 1 cut(s) | 203 |
| XmnI | GAANNNNTTC | 1 cut(s) | 216 |