ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| S-AdoMet_synt_C | PF02773 | 69 - 149 | 2.2e-28 | S-adenosylmethionine synthetase, C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 167 |
| Acc36I | ACCTGC | 2 cut(s) | 167, 218 |
| AccB1I | GGYRCC | 3 cut(s) | 155, 290, 332 |
| AccBSI | CCGCTC | 1 cut(s) | 791 |
| AccI | GTMKAC | 1 cut(s) | 321 |
| AciI | CCGC | 3 cut(s) | 452, 791, 1055 |
| AclWI | GGATC | 2 cut(s) | 302, 315 |
| AcoI | YGGCCR | 2 cut(s) | 238, 813 |
| AcsI | RAATTY | 2 cut(s) | 76, 983 |
| AcuI | CTGAAG | 1 cut(s) | 159 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 165, 853 |
| AflIII | ACRYGT | 1 cut(s) | 101 |
| AgsI | TTSAA | 2 cut(s) | 733, 827 |
| AjiI | CACGTC | 1 cut(s) | 131 |
| AjnI | CCWGG | 1 cut(s) | 92 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 794, 826 |
| AluBI | AGCT | 9 cut(s) | 51, 121, 371, 513, 563, 709, 715, 866, 963 |
| AluI | AGCT | 9 cut(s) | 51, 121, 371, 513, 563, 709, 715, 866, 963 |
| Alw21I | GWGCWC | 3 cut(s) | 130, 565, 996 |
| Alw26I | GTCTC | 2 cut(s) | 83, 137 |
| Alw44I | GTGCAC | 1 cut(s) | 126 |
| AlwI | GGATC | 2 cut(s) | 302, 315 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 397 |
| Ama87I | CYCGRG | 1 cut(s) | 594 |
| AoxI | GGCC | 4 cut(s) | 67, 238, 476, 813 |
| ApaLI | GTGCAC | 1 cut(s) | 126 |
| ApeKI | GCWGC | 2 cut(s) | 353, 586 |
| ApoI | RAATTY | 2 cut(s) | 76, 983 |
| AseI | ATTAAT | 1 cut(s) | 504 |
| AspLEI | GCGC | 2 cut(s) | 280, 844 |
| AspS9I | GGNCC | 1 cut(s) | 521 |
| AsuHPI | GGTGA | 3 cut(s) | 165, 233, 551 |
| AvaI | CYCGRG | 1 cut(s) | 594 |
| AvaII | GGWCC | 1 cut(s) | 521 |
| AxyI | CCTNAGG | 1 cut(s) | 71 |
| BaeGI | GKGCMC | 1 cut(s) | 130 |
| BalI | TGGCCA | 1 cut(s) | 815 |
| BamHI | GGATCC | 1 cut(s) | 307 |
| BanI | GGYRCC | 3 cut(s) | 155, 290, 332 |
| BanII | GRGCYC | 2 cut(s) | 38, 565 |
| BbsI | GAAGAC | 1 cut(s) | 745 |
| Bbv12I | GWGCWC | 3 cut(s) | 130, 565, 996 |
| BbvI | GCAGC | 2 cut(s) | 340, 573 |
| BccI | CCATC | 2 cut(s) | 173, 927 |
| BceAI | ACGGC | 1 cut(s) | 230 |
| BciT130I | CCWGG | 1 cut(s) | 94 |
| BcoDI | GTCTC | 2 cut(s) | 83, 137 |
| BfaI | CTAG | 2 cut(s) | 533, 924 |
| BfuAI | ACCTGC | 2 cut(s) | 167, 218 |
| BisI | GCNGC | 3 cut(s) | 354, 453, 587 |
| BlsI | GCNGC | 3 cut(s) | 355, 454, 588 |
| Bme1390I | CCNGG | 1 cut(s) | 94 |
| Bme18I | GGWCC | 1 cut(s) | 521 |
| BmeT110I | CYCGRG | 1 cut(s) | 594 |
| BmgBI | CACGTC | 1 cut(s) | 131 |
| BmgT120I | GGNCC | 1 cut(s) | 521 |
| BmiI | GGNNCC | 6 cut(s) | 157, 292, 309, 334, 522, 1059 |
| BmrFI | CCNGG | 1 cut(s) | 94 |
| BmsI | GCATC | 3 cut(s) | 214, 403, 862 |
| BoxI | GACNNNNGTC | 1 cut(s) | 95 |
| BpiI | GAAGAC | 1 cut(s) | 745 |
| Bpu10I | CCTNAGC | 1 cut(s) | 52 |
| BpuEI | CTTGAG | 3 cut(s) | 630, 695, 818 |
| Bsa29I | ATCGAT | 1 cut(s) | 43 |
| BsaBI | GATNNNNATC | 1 cut(s) | 251 |
| BsaI | GGTCTC | 1 cut(s) | 83 |
| BsaJI | CCNNGG | 3 cut(s) | 93, 164, 315 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 165, 853 |
| Bse118I | RCCGGY | 1 cut(s) | 474 |
| Bse1I | ACTGG | 1 cut(s) | 241 |
| Bse21I | CCTNAGG | 1 cut(s) | 71 |
| Bse8I | GATNNNNATC | 1 cut(s) | 251 |
| BseBI | CCWGG | 1 cut(s) | 94 |
| BseCI | ATCGAT | 1 cut(s) | 43 |
| BseDI | CCNNGG | 3 cut(s) | 93, 164, 315 |
| BseGI | GGATG | 3 cut(s) | 634, 686, 1044 |
| BseJI | GATNNNNATC | 1 cut(s) | 251 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 165, 853 |
| BseMII | CTCAG | 3 cut(s) | 66, 85, 131 |
| BseNI | ACTGG | 1 cut(s) | 241 |
| BseSI | GKGCMC | 1 cut(s) | 130 |
| BseXI | GCAGC | 2 cut(s) | 340, 573 |
| BseYI | CCCAGC | 1 cut(s) | 909 |
| BsgI | GTGCAG | 2 cut(s) | 104, 425 |
| BshFI | GGCC | 4 cut(s) | 69, 240, 478, 815 |
| BshNI | GGYRCC | 3 cut(s) | 155, 290, 332 |
| BshVI | ATCGAT | 1 cut(s) | 43 |
| BsiHKAI | GWGCWC | 3 cut(s) | 130, 565, 996 |
| BsiHKCI | CYCGRG | 1 cut(s) | 594 |
| BsiSI | CCGG | 2 cut(s) | 300, 475 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 165, 853 |
| BsmAI | GTCTC | 2 cut(s) | 83, 137 |
| BsmBI | CGTCTC | 1 cut(s) | 137 |
| BsnI | GGCC | 4 cut(s) | 69, 240, 478, 815 |
| Bso31I | GGTCTC | 1 cut(s) | 83 |
| BsoBI | CYCGRG | 1 cut(s) | 594 |
| Bsp1286I | GDGCHC | 4 cut(s) | 38, 130, 565, 996 |
| Bsp143I | GATC | 3 cut(s) | 40, 246, 307 |
| BspACI | CCGC | 3 cut(s) | 452, 791, 1055 |
| BspANI | GGCC | 4 cut(s) | 69, 240, 478, 815 |
| BspCNI | CTCAG | 3 cut(s) | 65, 84, 130 |
| BspDI | ATCGAT | 1 cut(s) | 43 |
| BspHI | TCATGA | 2 cut(s) | 565, 868 |
| BspLI | GGNNCC | 6 cut(s) | 157, 292, 309, 334, 522, 1059 |
| BspMI | ACCTGC | 2 cut(s) | 167, 218 |
| BspPI | GGATC | 2 cut(s) | 302, 315 |
| BspT107I | GGYRCC | 3 cut(s) | 155, 290, 332 |
| BspTNI | GGTCTC | 1 cut(s) | 83 |
| BsrBI | CCGCTC | 1 cut(s) | 791 |
| BsrFI | RCCGGY | 1 cut(s) | 474 |
| BsrI | ACTGG | 1 cut(s) | 241 |
| BssAI | RCCGGY | 1 cut(s) | 474 |
| BssECI | CCNNGG | 3 cut(s) | 93, 164, 315 |
| BssMI | GATC | 3 cut(s) | 40, 246, 307 |
| BssT1I | CCWWGG | 2 cut(s) | 164, 315 |
| Bst2UI | CCWGG | 1 cut(s) | 94 |
| Bst4CI | ACNGT | 1 cut(s) | 221 |
| Bst6I | CTCTTC | 1 cut(s) | 1019 |
| BstC8I | GCNNGC | 5 cut(s) | 60, 111, 351, 472, 476 |
| BstDEI | CTNAG | 4 cut(s) | 52, 71, 117, 357 |
| BstF5I | GGATG | 3 cut(s) | 634, 686, 1044 |
| BstHHI | GCGC | 2 cut(s) | 280, 844 |
| BstKTI | GATC | 3 cut(s) | 43, 249, 310 |
| BstMAI | GTCTC | 2 cut(s) | 83, 137 |
| BstMBI | GATC | 3 cut(s) | 40, 246, 307 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 706, 872, 920 |
| BstNI | CCWGG | 1 cut(s) | 94 |
| BstNSI | RCATGY | 1 cut(s) | 105 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 95 |
| BstSCI | CCNGG | 1 cut(s) | 92 |
| BstSLI | GKGCMC | 1 cut(s) | 130 |
| BstV1I | GCAGC | 2 cut(s) | 340, 573 |
| BstV2I | GAAGAC | 1 cut(s) | 745 |
| BstX2I | RGATCY | 1 cut(s) | 307 |
| BstYI | RGATCY | 1 cut(s) | 307 |
| Bsu15I | ATCGAT | 1 cut(s) | 43 |
| Bsu36I | CCTNAGG | 1 cut(s) | 71 |
| BsuRI | GGCC | 4 cut(s) | 69, 240, 478, 815 |
| BsuTUI | ATCGAT | 1 cut(s) | 43 |
| BtrI | CACGTC | 1 cut(s) | 131 |
| BtsCI | GGATG | 3 cut(s) | 634, 686, 1044 |
| BtsIMutI | CAGTG | 1 cut(s) | 135 |
| BveI | ACCTGC | 2 cut(s) | 167, 218 |
| Cac8I | GCNNGC | 5 cut(s) | 60, 111, 351, 472, 476 |
| CaiI | CAGNNNCTG | 1 cut(s) | 397 |
| CciI | TCATGA | 2 cut(s) | 565, 868 |
| CfoI | GCGC | 2 cut(s) | 280, 844 |
| Cfr10I | RCCGGY | 1 cut(s) | 474 |
| Cfr13I | GGNCC | 1 cut(s) | 521 |
| ClaI | ATCGAT | 1 cut(s) | 43 |
| CviAII | CATG | 8 cut(s) | 102, 281, 431, 566, 657, 848, 869, 1062 |
| DdeI | CTNAG | 4 cut(s) | 52, 71, 117, 357 |
| DpnI | GATC | 3 cut(s) | 42, 248, 309 |
| DpnII | GATC | 3 cut(s) | 40, 246, 307 |
| DraI | TTTAAA | 1 cut(s) | 720 |
| EaeI | YGGCCR | 2 cut(s) | 238, 813 |
| Eam1104I | CTCTTC | 1 cut(s) | 1019 |
| EarI | CTCTTC | 1 cut(s) | 1019 |
| Ecl136II | GAGCTC | 1 cut(s) | 563 |
| Eco130I | CCWWGG | 2 cut(s) | 164, 315 |
| Eco24I | GRGCYC | 2 cut(s) | 38, 565 |
| Eco31I | GGTCTC | 1 cut(s) | 83 |
| Eco47I | GGWCC | 1 cut(s) | 521 |
| Eco53kI | GAGCTC | 1 cut(s) | 563 |
| Eco57I | CTGAAG | 1 cut(s) | 159 |
| Eco81I | CCTNAGG | 1 cut(s) | 71 |
| Eco88I | CYCGRG | 1 cut(s) | 594 |
| EcoICRI | GAGCTC | 1 cut(s) | 563 |
| EcoO109I | RGGNCCY | 1 cut(s) | 521 |
| EcoRII | CCWGG | 1 cut(s) | 92 |
| EcoT14I | CCWWGG | 2 cut(s) | 164, 315 |
| EcoT38I | GRGCYC | 2 cut(s) | 38, 565 |
| ErhI | CCWWGG | 2 cut(s) | 164, 315 |
| Esp3I | CGTCTC | 1 cut(s) | 137 |
| FaeI | CATG | 8 cut(s) | 105, 284, 434, 569, 660, 851, 872, 1065 |
| FatI | CATG | 8 cut(s) | 101, 280, 430, 565, 656, 847, 868, 1061 |
| FauNDI | CATATG | 1 cut(s) | 64 |
| FblI | GTMKAC | 1 cut(s) | 321 |
| Fnu4HI | GCNGC | 3 cut(s) | 354, 453, 587 |
| FokI | GGATG | 3 cut(s) | 641, 693, 1051 |
| FriOI | GRGCYC | 2 cut(s) | 38, 565 |
| Fsp4HI | GCNGC | 3 cut(s) | 354, 453, 587 |
| FspBI | CTAG | 2 cut(s) | 533, 924 |
| GlaI | GCGC | 2 cut(s) | 279, 843 |
| GluI | GCNGC | 3 cut(s) | 354, 453, 587 |
| GsaI | CCCAGC | 1 cut(s) | 913 |
| HaeIII | GGCC | 4 cut(s) | 69, 240, 478, 815 |
| HapII | CCGG | 2 cut(s) | 300, 475 |
| HhaI | GCGC | 2 cut(s) | 280, 844 |
| Hin1II | CATG | 8 cut(s) | 105, 284, 434, 569, 660, 851, 872, 1065 |
| Hin6I | GCGC | 2 cut(s) | 278, 842 |
| HinP1I | GCGC | 2 cut(s) | 278, 842 |
| HincII | GTYRAC | 1 cut(s) | 1047 |
| HindII | GTYRAC | 1 cut(s) | 1047 |
| HindIII | AAGCTT | 2 cut(s) | 511, 713 |
| HinfI | GANTC | 3 cut(s) | 190, 592, 643 |
| HpaI | GTTAAC | 1 cut(s) | 1047 |
| HpaII | CCGG | 2 cut(s) | 300, 475 |
| HphI | GGTGA | 3 cut(s) | 165, 233, 551 |
| Hpy166II | GTNNAC | 4 cut(s) | 128, 212, 322, 1047 |
| Hpy188I | TCNGA | 1 cut(s) | 147 |
| Hpy188III | TCNNGA | 8 cut(s) | 73, 187, 566, 739, 797, 824, 869, 899 |
| Hpy8I | GTNNAC | 4 cut(s) | 128, 212, 322, 1047 |
| HpyAV | CCTTC | 4 cut(s) | 304, 727, 821, 938 |
| HpyCH4III | ACNGT | 1 cut(s) | 221 |
| HpyCH4IV | ACGT | 2 cut(s) | 130, 996 |
| HpyCH4V | TGCA | 8 cut(s) | 62, 85, 128, 227, 406, 551, 700, 785 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 706, 872, 920 |
| HpyF3I | CTNAG | 4 cut(s) | 52, 71, 117, 357 |
| HpySE526I | ACGT | 2 cut(s) | 130, 996 |
| Hsp92II | CATG | 8 cut(s) | 105, 284, 434, 569, 660, 851, 872, 1065 |
| HspAI | GCGC | 2 cut(s) | 278, 842 |
| KroI | GCCGGC | 1 cut(s) | 474 |
| KroNI | GCCGGC | 1 cut(s) | 476 |
| KspAI | GTTAAC | 1 cut(s) | 1047 |
| Kzo9I | GATC | 3 cut(s) | 40, 246, 307 |
| LmnI | GCTCC | 2 cut(s) | 560, 1057 |
| Lsp1109I | GCAGC | 2 cut(s) | 340, 573 |
| LweI | GCATC | 3 cut(s) | 214, 403, 862 |
| MaeI | CTAG | 2 cut(s) | 533, 924 |
| MaeII | ACGT | 2 cut(s) | 130, 996 |
| MaeIII | GTNAC | 2 cut(s) | 97, 171 |
| MalI | GATC | 3 cut(s) | 42, 248, 309 |
| MbiI | CCGCTC | 1 cut(s) | 791 |
| MboI | GATC | 3 cut(s) | 40, 246, 307 |
| MboII | GAAGA | 2 cut(s) | 745, 1006 |
| MfeI | CAATTG | 1 cut(s) | 809 |
| MflI | RGATCY | 1 cut(s) | 307 |
| MhlI | GDGCHC | 4 cut(s) | 38, 130, 565, 996 |
| MlsI | TGGCCA | 1 cut(s) | 815 |
| MluCI | AATT | 8 cut(s) | 76, 492, 552, 637, 726, 809, 894, 983 |
| MluNI | TGGCCA | 1 cut(s) | 815 |
| MlyI | GAGTC | 3 cut(s) | 199, 586, 637 |
| MnlI | CCTC | 4 cut(s) | 80, 646, 664, 847 |
| Mox20I | TGGCCA | 1 cut(s) | 815 |
| MroNI | GCCGGC | 1 cut(s) | 474 |
| MscI | TGGCCA | 1 cut(s) | 815 |
| MseI | TTAA | 5 cut(s) | 504, 546, 719, 747, 1046 |
| MslI | CAYNNNNRTG | 3 cut(s) | 222, 285, 771 |
| Msp20I | TGGCCA | 1 cut(s) | 815 |
| MspI | CCGG | 2 cut(s) | 300, 475 |
| MspR9I | CCNGG | 1 cut(s) | 94 |
| MunI | CAATTG | 1 cut(s) | 809 |
| MvaI | CCWGG | 1 cut(s) | 94 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 706, 872, 920 |
| NaeI | GCCGGC | 1 cut(s) | 476 |
| NdeI | CATATG | 1 cut(s) | 64 |
| NdeII | GATC | 3 cut(s) | 40, 246, 307 |
| NgoMIV | GCCGGC | 1 cut(s) | 474 |
| NlaIII | CATG | 8 cut(s) | 105, 284, 434, 569, 660, 851, 872, 1065 |
| NlaIV | GGNNCC | 6 cut(s) | 157, 292, 309, 334, 522, 1059 |
| NmuCI | GTSAC | 2 cut(s) | 97, 171 |
| NspI | RCATGY | 1 cut(s) | 105 |
| PagI | TCATGA | 2 cut(s) | 565, 868 |
| PaqCI | CACCTGC | 1 cut(s) | 167 |
| PciI | ACATGT | 1 cut(s) | 101 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 993 |
| PdiI | GCCGGC | 1 cut(s) | 476 |
| PkrI | GCNGC | 3 cut(s) | 355, 454, 588 |
| PleI | GAGTC | 3 cut(s) | 198, 586, 637 |
| PpsI | GAGTC | 3 cut(s) | 198, 586, 637 |
| PpuMI | RGGWCCY | 1 cut(s) | 521 |
| PscI | ACATGT | 1 cut(s) | 101 |
| PshAI | GACNNNNGTC | 1 cut(s) | 95 |
| PshBI | ATTAAT | 1 cut(s) | 504 |
| Psp124BI | GAGCTC | 1 cut(s) | 565 |
| Psp5II | RGGWCCY | 1 cut(s) | 521 |
| Psp6I | CCWGG | 1 cut(s) | 92 |
| PspFI | CCCAGC | 1 cut(s) | 909 |
| PspGI | CCWGG | 1 cut(s) | 92 |
| PspN4I | GGNNCC | 6 cut(s) | 157, 292, 309, 334, 522, 1059 |
| PspPI | GGNCC | 1 cut(s) | 521 |
| PspPPI | RGGWCCY | 1 cut(s) | 521 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 981, 1013 |
| PstNI | CAGNNNCTG | 1 cut(s) | 397 |
| PsuI | RGATCY | 1 cut(s) | 307 |
| RseI | CAYNNNNRTG | 3 cut(s) | 222, 285, 771 |
| SacI | GAGCTC | 1 cut(s) | 565 |
| SaqAI | TTAA | 5 cut(s) | 504, 546, 719, 747, 1046 |
| SatI | GCNGC | 3 cut(s) | 354, 453, 587 |
| Sau3AI | GATC | 3 cut(s) | 40, 246, 307 |
| Sau96I | GGNCC | 1 cut(s) | 521 |
| SchI | GAGTC | 3 cut(s) | 199, 586, 637 |
| ScrFI | CCNGG | 1 cut(s) | 94 |
| SduI | GDGCHC | 4 cut(s) | 38, 130, 565, 996 |
| SfaNI | GCATC | 3 cut(s) | 214, 403, 862 |
| SinI | GGWCC | 1 cut(s) | 521 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 222, 285, 771 |
| SmlI | CTYRAG | 3 cut(s) | 645, 710, 797 |
| SmoI | CTYRAG | 3 cut(s) | 645, 710, 797 |
| Sse9I | AATT | 8 cut(s) | 76, 492, 552, 637, 726, 809, 894, 983 |
| SsiI | CCGC | 3 cut(s) | 452, 791, 1055 |
| SspI | AATATT | 1 cut(s) | 763 |
| SspMI | CTAG | 2 cut(s) | 533, 924 |
| SstI | GAGCTC | 1 cut(s) | 565 |
| StyD4I | CCNGG | 1 cut(s) | 92 |
| StyI | CCWWGG | 2 cut(s) | 164, 315 |
| TaaI | ACNGT | 1 cut(s) | 221 |
| TaiI | ACGT | 2 cut(s) | 133, 999 |
| TaqI | TCGA | 3 cut(s) | 43, 193, 255 |
| TasI | AATT | 8 cut(s) | 76, 492, 552, 637, 726, 809, 894, 983 |
| TauI | GCSGC | 1 cut(s) | 455 |
| Tru1I | TTAA | 5 cut(s) | 504, 546, 719, 747, 1046 |
| Tru9I | TTAA | 5 cut(s) | 504, 546, 719, 747, 1046 |
| TscAI | CASTG | 1 cut(s) | 142 |
| TseFI | GTSAC | 2 cut(s) | 97, 171 |
| TseI | GCWGC | 2 cut(s) | 353, 586 |
| Tsp45I | GTSAC | 2 cut(s) | 97, 171 |
| TspDTI | ATGAA | 5 cut(s) | 582, 605, 755, 959, 989 |
| TspRI | CASTG | 1 cut(s) | 142 |
| VneI | GTGCAC | 1 cut(s) | 126 |
| VpaK11BI | GGWCC | 1 cut(s) | 521 |
| VspI | ATTAAT | 1 cut(s) | 504 |
| XapI | RAATTY | 2 cut(s) | 76, 983 |
| XceI | RCATGY | 1 cut(s) | 105 |
| XmiI | GTMKAC | 1 cut(s) | 321 |
| XspI | CTAG | 2 cut(s) | 533, 924 |