Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 72 - 119 | 4.5e-08 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 387, 539 |
| AccI | GTMKAC | 1 cut(s) | 216 |
| AccII | CGCG | 1 cut(s) | 445 |
| AclWI | GGATC | 2 cut(s) | 93, 155 |
| AcoI | YGGCCR | 1 cut(s) | 435 |
| AcsI | RAATTY | 1 cut(s) | 309 |
| AfaI | GTAC | 1 cut(s) | 591 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 544 |
| AgsI | TTSAA | 3 cut(s) | 125, 465, 509 |
| AjnI | CCWGG | 2 cut(s) | 254, 594 |
| AluBI | AGCT | 2 cut(s) | 157, 189 |
| AluI | AGCT | 2 cut(s) | 157, 189 |
| Alw21I | GWGCWC | 2 cut(s) | 369, 484 |
| Alw26I | GTCTC | 1 cut(s) | 70 |
| Alw44I | GTGCAC | 1 cut(s) | 480 |
| AlwI | GGATC | 2 cut(s) | 93, 155 |
| AoxI | GGCC | 1 cut(s) | 435 |
| ApaLI | GTGCAC | 1 cut(s) | 480 |
| ApeKI | GCWGC | 3 cut(s) | 131, 315, 344 |
| ApoI | RAATTY | 1 cut(s) | 309 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 458, 490 |
| AspS9I | GGNCC | 1 cut(s) | 551 |
| AsuHPI | GGTGA | 3 cut(s) | 15, 85, 289 |
| AvaII | GGWCC | 1 cut(s) | 551 |
| BaeGI | GKGCMC | 1 cut(s) | 484 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 501, 533 |
| Bbv12I | GWGCWC | 2 cut(s) | 369, 484 |
| BbvI | GCAGC | 3 cut(s) | 143, 327, 331 |
| BccI | CCATC | 1 cut(s) | 577 |
| BceAI | ACGGC | 1 cut(s) | 339 |
| BciT130I | CCWGG | 2 cut(s) | 256, 596 |
| BcoDI | GTCTC | 1 cut(s) | 70 |
| BfaI | CTAG | 3 cut(s) | 89, 579, 607 |
| BfmI | CTRYAG | 1 cut(s) | 360 |
| BfuAI | ACCTGC | 2 cut(s) | 387, 539 |
| BisI | GCNGC | 3 cut(s) | 132, 316, 345 |
| BlsI | GCNGC | 3 cut(s) | 133, 317, 346 |
| Bme1390I | CCNGG | 2 cut(s) | 256, 596 |
| Bme18I | GGWCC | 1 cut(s) | 551 |
| BmgT120I | GGNCC | 1 cut(s) | 551 |
| BmrFI | CCNGG | 2 cut(s) | 256, 596 |
| BmrI | ACTGGG | 1 cut(s) | 112 |
| BmsI | GCATC | 1 cut(s) | 336 |
| BmuI | ACTGGG | 1 cut(s) | 112 |
| BpuEI | CTTGAG | 1 cut(s) | 137 |
| BsaJI | CCNNGG | 3 cut(s) | 164, 255, 594 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 258, 288 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 544 |
| Bse1I | ACTGG | 1 cut(s) | 107 |
| BseBI | CCWGG | 2 cut(s) | 256, 596 |
| BseDI | CCNNGG | 3 cut(s) | 164, 255, 594 |
| BseGI | GGATG | 1 cut(s) | 564 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 544 |
| BseMII | CTCAG | 2 cut(s) | 18, 259 |
| BseNI | ACTGG | 1 cut(s) | 107 |
| BseSI | GKGCMC | 1 cut(s) | 484 |
| BseXI | GCAGC | 3 cut(s) | 143, 327, 331 |
| Bsh1236I | CGCG | 1 cut(s) | 445 |
| BshFI | GGCC | 1 cut(s) | 437 |
| BsiHKAI | GWGCWC | 2 cut(s) | 369, 484 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 544 |
| BsmAI | GTCTC | 1 cut(s) | 70 |
| BsnI | GGCC | 1 cut(s) | 437 |
| Bsp1286I | GDGCHC | 2 cut(s) | 369, 484 |
| Bsp143I | GATC | 4 cut(s) | 85, 160, 279, 410 |
| BspANI | GGCC | 1 cut(s) | 437 |
| BspCNI | CTCAG | 2 cut(s) | 19, 258 |
| BspFNI | CGCG | 1 cut(s) | 445 |
| BspMI | ACCTGC | 2 cut(s) | 387, 539 |
| BspPI | GGATC | 2 cut(s) | 93, 155 |
| BsrI | ACTGG | 1 cut(s) | 107 |
| BssECI | CCNNGG | 3 cut(s) | 164, 255, 594 |
| BssMI | GATC | 4 cut(s) | 85, 160, 279, 410 |
| Bst2UI | CCWGG | 2 cut(s) | 256, 596 |
| Bst4CI | ACNGT | 5 cut(s) | 385, 418, 502, 562, 587 |
| Bst6I | CTCTTC | 2 cut(s) | 237, 504 |
| BstDEI | CTNAG | 2 cut(s) | 27, 245 |
| BstEII | GGTNACC | 1 cut(s) | 21 |
| BstF5I | GGATG | 1 cut(s) | 564 |
| BstFNI | CGCG | 1 cut(s) | 445 |
| BstKTI | GATC | 4 cut(s) | 88, 163, 282, 413 |
| BstMAI | GTCTC | 1 cut(s) | 70 |
| BstMBI | GATC | 4 cut(s) | 85, 160, 279, 410 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 154, 186, 324 |
| BstNI | CCWGG | 2 cut(s) | 256, 596 |
| BstPI | GGTNACC | 1 cut(s) | 21 |
| BstSCI | CCNGG | 2 cut(s) | 254, 594 |
| BstSFI | CTRYAG | 1 cut(s) | 360 |
| BstSLI | GKGCMC | 1 cut(s) | 484 |
| BstUI | CGCG | 1 cut(s) | 445 |
| BstV1I | GCAGC | 3 cut(s) | 143, 327, 331 |
| BstX2I | RGATCY | 1 cut(s) | 85 |
| BstYI | RGATCY | 1 cut(s) | 85 |
| BsuRI | GGCC | 1 cut(s) | 437 |
| BtsCI | GGATG | 1 cut(s) | 564 |
| BtsIMutI | CAGTG | 3 cut(s) | 381, 423, 592 |
| BveI | ACCTGC | 2 cut(s) | 387, 539 |
| Cfr13I | GGNCC | 1 cut(s) | 551 |
| Csp6I | GTAC | 1 cut(s) | 590 |
| CviAII | CATG | 1 cut(s) | 351 |
| CviJI | RGCY | 6 cut(s) | 157, 189, 304, 344, 437, 493 |
| CviKI_1 | RGCY | 6 cut(s) | 157, 189, 304, 344, 437, 493 |
| CviQI | GTAC | 1 cut(s) | 590 |
| DdeI | CTNAG | 2 cut(s) | 27, 245 |
| DpnI | GATC | 4 cut(s) | 87, 162, 281, 412 |
| DpnII | GATC | 4 cut(s) | 85, 160, 279, 410 |
| EaeI | YGGCCR | 1 cut(s) | 435 |
| Eam1104I | CTCTTC | 2 cut(s) | 237, 504 |
| EarI | CTCTTC | 2 cut(s) | 237, 504 |
| Eco47I | GGWCC | 1 cut(s) | 551 |
| Eco91I | GGTNACC | 1 cut(s) | 21 |
| EcoO65I | GGTNACC | 1 cut(s) | 21 |
| EcoRII | CCWGG | 2 cut(s) | 254, 594 |
| FaeI | CATG | 1 cut(s) | 354 |
| FaiI | YATR | 7 cut(s) | 195, 294, 352, 372, 518, 540, 542 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 41, 73 |
| FatI | CATG | 1 cut(s) | 350 |
| FauNDI | CATATG | 1 cut(s) | 540 |
| FblI | GTMKAC | 1 cut(s) | 216 |
| Fnu4HI | GCNGC | 3 cut(s) | 132, 316, 345 |
| FokI | GGATG | 1 cut(s) | 551 |
| Fsp4HI | GCNGC | 3 cut(s) | 132, 316, 345 |
| FspBI | CTAG | 3 cut(s) | 89, 579, 607 |
| GluI | GCNGC | 3 cut(s) | 132, 316, 345 |
| HaeIII | GGCC | 1 cut(s) | 437 |
| Hin1II | CATG | 1 cut(s) | 354 |
| HincII | GTYRAC | 1 cut(s) | 217 |
| HindII | GTYRAC | 1 cut(s) | 217 |
| HindIII | AAGCTT | 1 cut(s) | 155 |
| HinfI | GANTC | 4 cut(s) | 78, 388, 457, 575 |
| HphI | GGTGA | 3 cut(s) | 15, 85, 289 |
| Hpy166II | GTNNAC | 4 cut(s) | 217, 482, 554, 590 |
| Hpy188I | TCNGA | 5 cut(s) | 165, 284, 498, 535, 574 |
| Hpy188III | TCNNGA | 2 cut(s) | 236, 247 |
| Hpy8I | GTNNAC | 4 cut(s) | 217, 482, 554, 590 |
| HpyAV | CCTTC | 2 cut(s) | 447, 540 |
| HpyCH4III | ACNGT | 5 cut(s) | 385, 418, 502, 562, 587 |
| HpyCH4V | TGCA | 4 cut(s) | 62, 180, 315, 482 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 154, 186, 324 |
| HpyF3I | CTNAG | 2 cut(s) | 27, 245 |
| Hsp92II | CATG | 1 cut(s) | 354 |
| Kzo9I | GATC | 4 cut(s) | 85, 160, 279, 410 |
| Lsp1109I | GCAGC | 3 cut(s) | 143, 327, 331 |
| LweI | GCATC | 1 cut(s) | 336 |
| MaeI | CTAG | 3 cut(s) | 89, 579, 607 |
| MaeIII | GTNAC | 2 cut(s) | 21, 581 |
| MalI | GATC | 4 cut(s) | 87, 162, 281, 412 |
| MboI | GATC | 4 cut(s) | 85, 160, 279, 410 |
| MboII | GAAGA | 3 cut(s) | 224, 433, 521 |
| MfeI | CAATTG | 1 cut(s) | 319 |
| MflI | RGATCY | 1 cut(s) | 85 |
| MhlI | GDGCHC | 2 cut(s) | 369, 484 |
| MluCI | AATT | 5 cut(s) | 175, 207, 309, 319, 504 |
| MlyI | GAGTC | 2 cut(s) | 72, 397 |
| MnlI | CCTC | 6 cut(s) | 159, 240, 386, 504, 505, 538 |
| MseI | TTAA | 2 cut(s) | 41, 206 |
| MspR9I | CCNGG | 2 cut(s) | 256, 596 |
| MunI | CAATTG | 1 cut(s) | 319 |
| MvaI | CCWGG | 2 cut(s) | 256, 596 |
| MvnI | CGCG | 1 cut(s) | 445 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 154, 186, 324 |
| NdeI | CATATG | 1 cut(s) | 540 |
| NdeII | GATC | 4 cut(s) | 85, 160, 279, 410 |
| NlaIII | CATG | 1 cut(s) | 354 |
| NmuCI | GTSAC | 2 cut(s) | 21, 581 |
| PfeI | GAWTC | 2 cut(s) | 457, 575 |
| PkrI | GCNGC | 3 cut(s) | 133, 317, 346 |
| PleI | GAGTC | 2 cut(s) | 72, 396 |
| PpsI | GAGTC | 2 cut(s) | 72, 396 |
| Psp6I | CCWGG | 2 cut(s) | 254, 594 |
| PspEI | GGTNACC | 1 cut(s) | 21 |
| PspGI | CCWGG | 2 cut(s) | 254, 594 |
| PspPI | GGNCC | 1 cut(s) | 551 |
| PsuI | RGATCY | 1 cut(s) | 85 |
| RsaI | GTAC | 1 cut(s) | 591 |
| RsaNI | GTAC | 1 cut(s) | 590 |
| SalI | GTCGAC | 1 cut(s) | 215 |
| SaqAI | TTAA | 2 cut(s) | 41, 206 |
| SatI | GCNGC | 3 cut(s) | 132, 316, 345 |
| Sau3AI | GATC | 4 cut(s) | 85, 160, 279, 410 |
| Sau96I | GGNCC | 1 cut(s) | 551 |
| SchI | GAGTC | 2 cut(s) | 72, 397 |
| ScrFI | CCNGG | 2 cut(s) | 256, 596 |
| SduI | GDGCHC | 2 cut(s) | 369, 484 |
| SetI | ASST | 9 cut(s) | 28, 47, 59, 159, 191, 401, 487, 516, 553 |
| SfaNI | GCATC | 1 cut(s) | 336 |
| SfcI | CTRYAG | 1 cut(s) | 360 |
| SinI | GGWCC | 1 cut(s) | 551 |
| SmlI | CTYRAG | 1 cut(s) | 152 |
| SmoI | CTYRAG | 1 cut(s) | 152 |
| Sse9I | AATT | 5 cut(s) | 175, 207, 309, 319, 504 |
| SspMI | CTAG | 3 cut(s) | 89, 579, 607 |
| StyD4I | CCNGG | 2 cut(s) | 254, 594 |
| TaaI | ACNGT | 5 cut(s) | 385, 418, 502, 562, 587 |
| TaqI | TCGA | 2 cut(s) | 216, 391 |
| TasI | AATT | 5 cut(s) | 175, 207, 309, 319, 504 |
| TfiI | GAWTC | 2 cut(s) | 457, 575 |
| Tru1I | TTAA | 2 cut(s) | 41, 206 |
| Tru9I | TTAA | 2 cut(s) | 41, 206 |
| TscAI | CASTG | 3 cut(s) | 388, 423, 592 |
| TseFI | GTSAC | 2 cut(s) | 21, 581 |
| TseI | GCWGC | 3 cut(s) | 131, 315, 344 |
| Tsp45I | GTSAC | 2 cut(s) | 21, 581 |
| TspDTI | ATGAA | 2 cut(s) | 309, 339 |
| TspRI | CASTG | 3 cut(s) | 388, 423, 592 |
| VneI | GTGCAC | 1 cut(s) | 480 |
| VpaK11BI | GGWCC | 1 cut(s) | 551 |
| XapI | RAATTY | 1 cut(s) | 309 |
| XmiI | GTMKAC | 1 cut(s) | 216 |
| XspI | CTAG | 3 cut(s) | 89, 579, 607 |