Rh5AG084900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000044
Physical Location & Seq
Reverse (-)
7306171 .. 7308317
2147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG084900.1

Sequence Viewer

Length: 378 bp
ATGACATTAATTCAAGGAGGGGGCGTAAACGAAGTCCATCGGCATCGTGCAAAGAAGAGTAATGTTTTTCAAGTCTACGTTGCTAAGAAAGTGGTGGAGGTGGTTCAACAGATTAGAAACCCCTCCTCTGCTGATCCTAATGCATCATCTGGGATTTCACGGATAGTACATACTGACATGGTCAAGACTTCACAGGTTCCAGAGACACAACTTTCTCCTTTGGCTGCACCTTCTCCAAGAGTGCATTCACCAATTCTAGGACCTCCGTCTGTGGGAGGTTTGGCAGGTGGCGGCAGAGCCAGAGCAGTGGCGTGGAAGCCCCGCCACGAAACCGCTGCTATTGTTGGTGGCAGCGCCGTGGTTGCCCACTTGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.07

Weight (kDa)

10.97

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 275
AccI GTMKAC 1 cut(s) 75
AciI CCGC 3 cut(s) 291, 322, 333
AclWI GGATC 1 cut(s) 128
AfaI GTAC 1 cut(s) 168
AfiI CCNNNNNNNGG 2 cut(s) 257, 272
AgsI TTSAA 3 cut(s) 14, 71, 107
AjuI GAANNNNNNNTTGG 2 cut(s) 229, 261
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 1 cut(s) 128
ApeKI GCWGC 3 cut(s) 224, 335, 351
AseI ATTAAT 1 cut(s) 8
AspLEI GCGC 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 240
AvaII GGWCC 1 cut(s) 260
BbvI GCAGC 3 cut(s) 211, 322, 363
BccI CCATC 1 cut(s) 45
BceAI ACGGC 1 cut(s) 341
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 1 cut(s) 257
BfoI RGCGCY 1 cut(s) 357
BfuAI ACCTGC 1 cut(s) 275
BisI GCNGC 4 cut(s) 225, 292, 336, 352
BlsI GCNGC 4 cut(s) 226, 293, 337, 353
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 198
BmsI GCATC 2 cut(s) 52, 152
BoxI GACNNNNGTC 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 357
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 272
BseDI CCNNGG 1 cut(s) 357
BseLI CCNNNNNNNGG 2 cut(s) 257, 272
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 3 cut(s) 211, 322, 363
BsgI GTGCAG 1 cut(s) 210
BslI CCNNNNNNNGG 2 cut(s) 257, 272
BsmAI GTCTC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 244
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 3 cut(s) 291, 322, 333
BspLI GGNNCC 1 cut(s) 198
BspMI ACCTGC 1 cut(s) 275
BspPI GGATC 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 1 cut(s) 133
Bst6I CTCTTC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 84
BstDSI CCRYGG 1 cut(s) 357
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 1 cut(s) 356
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstPAI GACNNNNGTC 1 cut(s) 265
BstV1I GCAGC 3 cut(s) 211, 322, 363
BstXI CCANNNNNNTGG 1 cut(s) 307
BtgI CCRYGG 1 cut(s) 357
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 2 cut(s) 312, 373
BveI ACCTGC 1 cut(s) 275
CfoI GCGC 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 167
CviAII CATG 1 cut(s) 178
CviJI RGCY 3 cut(s) 224, 299, 319
CviKI_1 RGCY 3 cut(s) 224, 299, 319
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 1 cut(s) 84
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco47I GGWCC 1 cut(s) 260
EcoO109I RGGNCCY 1 cut(s) 260
EcoT22I ATGCAT 1 cut(s) 145
FaeI CATG 1 cut(s) 181
FaiI YATR 2 cut(s) 171, 179
FatI CATG 1 cut(s) 177
FauI CCCGC 1 cut(s) 329
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 4 cut(s) 225, 292, 336, 352
Fsp4HI GCNGC 4 cut(s) 225, 292, 336, 352
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 355
GluI GCNGC 4 cut(s) 225, 292, 336, 352
HaeII RGCGCY 1 cut(s) 357
HhaI GCGC 1 cut(s) 356
Hin1II CATG 1 cut(s) 181
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HphI GGTGA 1 cut(s) 240
Hpy166II GTNNAC 2 cut(s) 28, 76
Hpy188III TCNNGA 2 cut(s) 184, 200
Hpy8I GTNNAC 2 cut(s) 28, 76
HpyAV CCTTC 1 cut(s) 240
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 5 cut(s) 50, 143, 227, 244, 373
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 1 cut(s) 181
HspAI GCGC 1 cut(s) 354
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 5 cut(s) 135, 179, 213, 270, 313
Lsp1109I GCAGC 3 cut(s) 211, 322, 363
LweI GCATC 2 cut(s) 52, 152
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 78
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 1 cut(s) 67
MluCI AATT 2 cut(s) 9, 252
MnlI CCTC 6 cut(s) 11, 91, 133, 136, 269, 273
Mph1103I ATGCAT 1 cut(s) 145
MseI TTAA 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 335
Mva1269I GAATGC 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 362
NdeII GATC 1 cut(s) 133
NlaIII CATG 1 cut(s) 181
NlaIV GGNNCC 1 cut(s) 198
NsiI ATGCAT 1 cut(s) 145
PaqCI CACCTGC 1 cut(s) 275
PctI GAATGC 1 cut(s) 244
PflFI GACNNNGTC 1 cut(s) 179
PkrI GCNGC 4 cut(s) 226, 293, 337, 353
PpuMI RGGWCCY 1 cut(s) 260
PshAI GACNNNNGTC 1 cut(s) 265
PshBI ATTAAT 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 260
PspPPI RGGWCCY 1 cut(s) 260
PsyI GACNNNGTC 1 cut(s) 179
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 4 cut(s) 225, 292, 336, 352
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 1 cut(s) 260
SetI ASST 7 cut(s) 81, 102, 198, 232, 265, 280, 289
SfaNI GCATC 2 cut(s) 52, 152
SinI GGWCC 1 cut(s) 260
Sse9I AATT 2 cut(s) 9, 252
SsiI CCGC 3 cut(s) 291, 322, 333
SspMI CTAG 1 cut(s) 257
TaiI ACGT 1 cut(s) 81
TasI AATT 2 cut(s) 9, 252
TatI WGTACW 1 cut(s) 166
TauI GCSGC 1 cut(s) 294
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 1 cut(s) 312
TseI GCWGC 3 cut(s) 224, 335, 351
TspGWI ACGGA 2 cut(s) 175, 255
TspRI CASTG 1 cut(s) 312
Tth111I GACNNNGTC 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 260
VspI ATTAAT 1 cut(s) 8
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 1 cut(s) 257
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.