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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 491 |
| AccII | CGCG | 1 cut(s) | 480 |
| AciI | CCGC | 2 cut(s) | 14, 437 |
| AclWI | GGATC | 2 cut(s) | 554, 567 |
| AcsI | RAATTY | 4 cut(s) | 64, 565, 599, 725 |
| AcvI | CACGTG | 1 cut(s) | 168 |
| AfaI | GTAC | 2 cut(s) | 271, 511 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 187, 320, 389, 709 |
| AgsI | TTSAA | 1 cut(s) | 200 |
| AjnI | CCWGG | 4 cut(s) | 192, 202, 463, 555 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 317, 349 |
| AluBI | AGCT | 1 cut(s) | 698 |
| AluI | AGCT | 1 cut(s) | 698 |
| Alw21I | GWGCWC | 1 cut(s) | 700 |
| Alw26I | GTCTC | 1 cut(s) | 619 |
| AlwI | GGATC | 2 cut(s) | 554, 567 |
| ApeKI | GCWGC | 2 cut(s) | 434, 673 |
| ApoI | RAATTY | 4 cut(s) | 64, 565, 599, 725 |
| AspLEI | GCGC | 2 cut(s) | 480, 678 |
| AspS9I | GGNCC | 1 cut(s) | 190 |
| AsuC2I | CCSGG | 1 cut(s) | 690 |
| AsuHPI | GGTGA | 1 cut(s) | 227 |
| AvaII | GGWCC | 1 cut(s) | 190 |
| BamHI | GGATCC | 1 cut(s) | 559 |
| BanII | GRGCYC | 1 cut(s) | 700 |
| BbrPI | CACGTG | 1 cut(s) | 168 |
| BbsI | GAAGAC | 1 cut(s) | 271 |
| Bbv12I | GWGCWC | 1 cut(s) | 700 |
| BbvCI | CCTCAGC | 1 cut(s) | 21 |
| BbvI | GCAGC | 2 cut(s) | 421, 685 |
| BciT130I | CCWGG | 4 cut(s) | 194, 204, 465, 557 |
| BcnI | CCSGG | 1 cut(s) | 690 |
| BcoDI | GTCTC | 1 cut(s) | 619 |
| BglII | AGATCT | 1 cut(s) | 135 |
| BisI | GCNGC | 3 cut(s) | 435, 438, 674 |
| BlsI | GCNGC | 3 cut(s) | 436, 439, 675 |
| Bme1390I | CCNGG | 5 cut(s) | 194, 204, 465, 557, 690 |
| Bme18I | GGWCC | 1 cut(s) | 190 |
| BmgT120I | GGNCC | 1 cut(s) | 190 |
| BmiI | GGNNCC | 4 cut(s) | 375, 498, 561, 573 |
| BmrFI | CCNGG | 5 cut(s) | 194, 204, 465, 557, 690 |
| BmrI | ACTGGG | 1 cut(s) | 65 |
| BmsI | GCATC | 1 cut(s) | 376 |
| BmuI | ACTGGG | 1 cut(s) | 65 |
| BpiI | GAAGAC | 1 cut(s) | 271 |
| Bpu10I | CCTNAGC | 1 cut(s) | 21 |
| BpuMI | CCSGG | 1 cut(s) | 690 |
| BsaAI | YACGTR | 1 cut(s) | 168 |
| BsaJI | CCNNGG | 2 cut(s) | 290, 555 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 187, 320, 389, 709 |
| Bse1I | ACTGG | 1 cut(s) | 71 |
| Bse3DI | GCAATG | 1 cut(s) | 400 |
| BseBI | CCWGG | 4 cut(s) | 194, 204, 465, 557 |
| BseDI | CCNNGG | 2 cut(s) | 290, 555 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 187, 320, 389, 709 |
| BseMI | GCAATG | 1 cut(s) | 400 |
| BseMII | CTCAG | 4 cut(s) | 35, 153, 231, 344 |
| BseNI | ACTGG | 1 cut(s) | 71 |
| BseRI | GAGGAG | 3 cut(s) | 9, 158, 605 |
| BseXI | GCAGC | 2 cut(s) | 421, 685 |
| Bsh1236I | CGCG | 1 cut(s) | 480 |
| BsiHKAI | GWGCWC | 1 cut(s) | 700 |
| BsiSI | CCGG | 1 cut(s) | 689 |
| BslFI | GGGAC | 1 cut(s) | 538 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 187, 320, 389, 709 |
| BsmAI | GTCTC | 1 cut(s) | 619 |
| BsmFI | GGGAC | 1 cut(s) | 538 |
| Bsp1286I | GDGCHC | 1 cut(s) | 700 |
| Bsp143I | GATC | 3 cut(s) | 91, 135, 559 |
| BspACI | CCGC | 2 cut(s) | 14, 437 |
| BspCNI | CTCAG | 4 cut(s) | 34, 152, 232, 343 |
| BspFNI | CGCG | 1 cut(s) | 480 |
| BspHI | TCATGA | 1 cut(s) | 88 |
| BspLI | GGNNCC | 4 cut(s) | 375, 498, 561, 573 |
| BspPI | GGATC | 2 cut(s) | 554, 567 |
| BsrDI | GCAATG | 1 cut(s) | 400 |
| BsrI | ACTGG | 1 cut(s) | 71 |
| BssECI | CCNNGG | 2 cut(s) | 290, 555 |
| BssMI | GATC | 3 cut(s) | 91, 135, 559 |
| Bst2UI | CCWGG | 4 cut(s) | 194, 204, 465, 557 |
| Bst4CI | ACNGT | 3 cut(s) | 105, 119, 274 |
| BstBAI | YACGTR | 1 cut(s) | 168 |
| BstC8I | GCNNGC | 1 cut(s) | 391 |
| BstDEI | CTNAG | 6 cut(s) | 21, 139, 240, 330, 534, 657 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 318, 707 |
| BstFNI | CGCG | 1 cut(s) | 480 |
| BstHHI | GCGC | 2 cut(s) | 480, 678 |
| BstKTI | GATC | 3 cut(s) | 94, 138, 562 |
| BstMAI | GTCTC | 1 cut(s) | 619 |
| BstMBI | GATC | 3 cut(s) | 91, 135, 559 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 22, 250, 259, 395 |
| BstNI | CCWGG | 4 cut(s) | 194, 204, 465, 557 |
| BstNSI | RCATGY | 1 cut(s) | 257 |
| BstSCI | CCNGG | 5 cut(s) | 192, 202, 463, 555, 688 |
| BstUI | CGCG | 1 cut(s) | 480 |
| BstV1I | GCAGC | 2 cut(s) | 421, 685 |
| BstV2I | GAAGAC | 1 cut(s) | 271 |
| BstX2I | RGATCY | 2 cut(s) | 135, 559 |
| BstYI | RGATCY | 2 cut(s) | 135, 559 |
| Cac8I | GCNNGC | 1 cut(s) | 391 |
| CciI | TCATGA | 1 cut(s) | 88 |
| CfoI | GCGC | 2 cut(s) | 480, 678 |
| Cfr13I | GGNCC | 1 cut(s) | 190 |
| CsiI | ACCWGGT | 1 cut(s) | 202 |
| Csp6I | GTAC | 2 cut(s) | 270, 510 |
| CviAII | CATG | 3 cut(s) | 89, 212, 254 |
| CviJI | RGCY | 8 cut(s) | 25, 295, 434, 440, 468, 532, 574, 698 |
| CviKI_1 | RGCY | 8 cut(s) | 25, 295, 434, 440, 468, 532, 574, 698 |
| CviQI | GTAC | 2 cut(s) | 270, 510 |
| DdeI | CTNAG | 6 cut(s) | 21, 139, 240, 330, 534, 657 |
| DpnI | GATC | 3 cut(s) | 93, 137, 561 |
| DpnII | GATC | 3 cut(s) | 91, 135, 559 |
| Ecl136II | GAGCTC | 1 cut(s) | 698 |
| Eco24I | GRGCYC | 1 cut(s) | 700 |
| Eco47I | GGWCC | 1 cut(s) | 190 |
| Eco53kI | GAGCTC | 1 cut(s) | 698 |
| Eco72I | CACGTG | 1 cut(s) | 168 |
| EcoICRI | GAGCTC | 1 cut(s) | 698 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 318, 707 |
| EcoRI | GAATTC | 1 cut(s) | 64 |
| EcoRII | CCWGG | 4 cut(s) | 192, 202, 463, 555 |
| EcoT38I | GRGCYC | 1 cut(s) | 700 |
| FaeI | CATG | 3 cut(s) | 92, 215, 257 |
| FaiI | YATR | 6 cut(s) | 59, 90, 213, 255, 320, 723 |
| FaqI | GGGAC | 1 cut(s) | 538 |
| FatI | CATG | 3 cut(s) | 88, 211, 253 |
| FblI | GTMKAC | 1 cut(s) | 491 |
| Fnu4HI | GCNGC | 3 cut(s) | 435, 438, 674 |
| FriOI | GRGCYC | 1 cut(s) | 700 |
| Fsp4HI | GCNGC | 3 cut(s) | 435, 438, 674 |
| GlaI | GCGC | 2 cut(s) | 479, 677 |
| GluI | GCNGC | 3 cut(s) | 435, 438, 674 |
| HapII | CCGG | 1 cut(s) | 689 |
| HhaI | GCGC | 2 cut(s) | 480, 678 |
| Hin1II | CATG | 3 cut(s) | 92, 215, 257 |
| Hin6I | GCGC | 2 cut(s) | 478, 676 |
| HinP1I | GCGC | 2 cut(s) | 478, 676 |
| HinfI | GANTC | 2 cut(s) | 146, 488 |
| HpaII | CCGG | 1 cut(s) | 689 |
| HphI | GGTGA | 1 cut(s) | 227 |
| Hpy166II | GTNNAC | 2 cut(s) | 492, 653 |
| Hpy188I | TCNGA | 4 cut(s) | 135, 142, 451, 734 |
| Hpy188III | TCNNGA | 4 cut(s) | 89, 314, 383, 703 |
| Hpy8I | GTNNAC | 2 cut(s) | 492, 653 |
| Hpy99I | CGWCG | 1 cut(s) | 288 |
| HpyAV | CCTTC | 4 cut(s) | 164, 332, 510, 574 |
| HpyCH4III | ACNGT | 3 cut(s) | 105, 119, 274 |
| HpyCH4IV | ACGT | 2 cut(s) | 167, 268 |
| HpyCH4V | TGCA | 3 cut(s) | 83, 171, 211 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 22, 250, 259, 395 |
| HpyF3I | CTNAG | 6 cut(s) | 21, 139, 240, 330, 534, 657 |
| HpySE526I | ACGT | 2 cut(s) | 167, 268 |
| Hsp92II | CATG | 3 cut(s) | 92, 215, 257 |
| HspAI | GCGC | 2 cut(s) | 478, 676 |
| Kzo9I | GATC | 3 cut(s) | 91, 135, 559 |
| LmnI | GCTCC | 2 cut(s) | 571, 713 |
| Lsp1109I | GCAGC | 2 cut(s) | 421, 685 |
| LweI | GCATC | 1 cut(s) | 376 |
| MabI | ACCWGGT | 1 cut(s) | 202 |
| MaeII | ACGT | 2 cut(s) | 167, 268 |
| MalI | GATC | 3 cut(s) | 93, 137, 561 |
| MboI | GATC | 3 cut(s) | 91, 135, 559 |
| MboII | GAAGA | 4 cut(s) | 276, 435, 495, 643 |
| MflI | RGATCY | 2 cut(s) | 135, 559 |
| MhlI | GDGCHC | 1 cut(s) | 700 |
| MluCI | AATT | 6 cut(s) | 64, 84, 404, 565, 599, 725 |
| MlyI | GAGTC | 2 cut(s) | 155, 497 |
| MmeI | TCCRAC | 2 cut(s) | 315, 381 |
| MseI | TTAA | 1 cut(s) | 75 |
| MslI | CAYNNNNRTG | 1 cut(s) | 368 |
| MspI | CCGG | 1 cut(s) | 689 |
| MspR9I | CCNGG | 5 cut(s) | 194, 204, 465, 557, 690 |
| MvaI | CCWGG | 4 cut(s) | 194, 204, 465, 557 |
| MvnI | CGCG | 1 cut(s) | 480 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 22, 250, 259, 395 |
| NciI | CCSGG | 1 cut(s) | 690 |
| NdeII | GATC | 3 cut(s) | 91, 135, 559 |
| NlaIII | CATG | 3 cut(s) | 92, 215, 257 |
| NlaIV | GGNNCC | 4 cut(s) | 375, 498, 561, 573 |
| NmeAIII | GCCGAG | 1 cut(s) | 271 |
| NspI | RCATGY | 1 cut(s) | 257 |
| PagI | TCATGA | 1 cut(s) | 88 |
| PkrI | GCNGC | 3 cut(s) | 436, 439, 675 |
| PleI | GAGTC | 2 cut(s) | 154, 496 |
| PmaCI | CACGTG | 1 cut(s) | 168 |
| PmlI | CACGTG | 1 cut(s) | 168 |
| PpsI | GAGTC | 2 cut(s) | 154, 496 |
| Ppu21I | YACGTR | 1 cut(s) | 168 |
| Psp124BI | GAGCTC | 1 cut(s) | 700 |
| Psp6I | CCWGG | 4 cut(s) | 192, 202, 463, 555 |
| PspCI | CACGTG | 1 cut(s) | 168 |
| PspGI | CCWGG | 4 cut(s) | 192, 202, 463, 555 |
| PspN4I | GGNNCC | 4 cut(s) | 375, 498, 561, 573 |
| PspPI | GGNCC | 1 cut(s) | 190 |
| PsuI | RGATCY | 2 cut(s) | 135, 559 |
| RsaI | GTAC | 2 cut(s) | 271, 511 |
| RsaNI | GTAC | 2 cut(s) | 270, 510 |
| RseI | CAYNNNNRTG | 1 cut(s) | 368 |
| SacI | GAGCTC | 1 cut(s) | 700 |
| SaqAI | TTAA | 1 cut(s) | 75 |
| SatI | GCNGC | 3 cut(s) | 435, 438, 674 |
| Sau3AI | GATC | 3 cut(s) | 91, 135, 559 |
| Sau96I | GGNCC | 1 cut(s) | 190 |
| SchI | GAGTC | 2 cut(s) | 155, 497 |
| ScrFI | CCNGG | 5 cut(s) | 194, 204, 465, 557, 690 |
| SduI | GDGCHC | 1 cut(s) | 700 |
| SexAI | ACCWGGT | 1 cut(s) | 202 |
| SfaNI | GCATC | 1 cut(s) | 376 |
| SinI | GGWCC | 1 cut(s) | 190 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 368 |
| Sse9I | AATT | 6 cut(s) | 64, 84, 404, 565, 599, 725 |
| SsiI | CCGC | 2 cut(s) | 14, 437 |
| SstI | GAGCTC | 1 cut(s) | 700 |
| StyD4I | CCNGG | 5 cut(s) | 192, 202, 463, 555, 688 |
| TaaI | ACNGT | 3 cut(s) | 105, 119, 274 |
| TaiI | ACGT | 2 cut(s) | 170, 271 |
| TaqI | TCGA | 2 cut(s) | 506, 694 |
| TasI | AATT | 6 cut(s) | 64, 84, 404, 565, 599, 725 |
| TauI | GCSGC | 1 cut(s) | 440 |
| Tru1I | TTAA | 1 cut(s) | 75 |
| Tru9I | TTAA | 1 cut(s) | 75 |
| TseI | GCWGC | 2 cut(s) | 434, 673 |
| TspDTI | ATGAA | 1 cut(s) | 77 |
| TspGWI | ACGGA | 1 cut(s) | 509 |
| VpaK11BI | GGWCC | 1 cut(s) | 190 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 318, 707 |
| XapI | RAATTY | 4 cut(s) | 64, 565, 599, 725 |
| XceI | RCATGY | 1 cut(s) | 257 |
| XmiI | GTMKAC | 1 cut(s) | 491 |