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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 494 |
| AccII | CGCG | 1 cut(s) | 315 |
| AciI | CCGC | 4 cut(s) | 313, 315, 506, 527 |
| AclWI | GGATC | 1 cut(s) | 446 |
| AcsI | RAATTY | 1 cut(s) | 69 |
| AcuI | CTGAAG | 1 cut(s) | 267 |
| AfaI | GTAC | 4 cut(s) | 8, 537, 544, 556 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 164 |
| AgsI | TTSAA | 3 cut(s) | 53, 65, 80 |
| AluBI | AGCT | 1 cut(s) | 115 |
| AluI | AGCT | 1 cut(s) | 115 |
| Alw21I | GWGCWC | 1 cut(s) | 397 |
| AlwI | GGATC | 1 cut(s) | 446 |
| ApoI | RAATTY | 1 cut(s) | 69 |
| AseI | ATTAAT | 1 cut(s) | 327 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 69 |
| AsuC2I | CCSGG | 1 cut(s) | 399 |
| AsuHPI | GGTGA | 2 cut(s) | 101, 413 |
| Bbv12I | GWGCWC | 1 cut(s) | 397 |
| BccI | CCATC | 1 cut(s) | 353 |
| BceAI | ACGGC | 2 cut(s) | 68, 507 |
| BciVI | GTATCC | 1 cut(s) | 320 |
| BcnI | CCSGG | 1 cut(s) | 399 |
| BfuI | GTATCC | 1 cut(s) | 320 |
| BisI | GCNGC | 2 cut(s) | 507, 528 |
| BlsI | GCNGC | 2 cut(s) | 508, 529 |
| BmcAI | AGTACT | 1 cut(s) | 556 |
| Bme1390I | CCNGG | 1 cut(s) | 399 |
| BmrFI | CCNGG | 1 cut(s) | 399 |
| BmsI | GCATC | 2 cut(s) | 286, 482 |
| Bpu10I | CCTNAGC | 1 cut(s) | 27 |
| BpuEI | CTTGAG | 1 cut(s) | 170 |
| BpuMI | CCSGG | 1 cut(s) | 399 |
| Bsa29I | ATCGAT | 1 cut(s) | 97 |
| BsaAI | YACGTR | 1 cut(s) | 535 |
| BsaJI | CCNNGG | 2 cut(s) | 18, 313 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 230, 260 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 164 |
| Bse1I | ACTGG | 1 cut(s) | 351 |
| BseCI | ATCGAT | 1 cut(s) | 97 |
| BseDI | CCNNGG | 2 cut(s) | 18, 313 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 164 |
| BseMII | CTCAG | 1 cut(s) | 491 |
| BseNI | ACTGG | 1 cut(s) | 351 |
| BseRI | GAGGAG | 2 cut(s) | 93, 96 |
| Bsh1236I | CGCG | 1 cut(s) | 315 |
| BshVI | ATCGAT | 1 cut(s) | 97 |
| BsiHKAI | GWGCWC | 1 cut(s) | 397 |
| BsiSI | CCGG | 1 cut(s) | 398 |
| BsiWI | CGTACG | 1 cut(s) | 535 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 164 |
| BsmI | GAATGC | 2 cut(s) | 223, 517 |
| Bsp1286I | GDGCHC | 1 cut(s) | 397 |
| Bsp143I | GATC | 3 cut(s) | 91, 98, 451 |
| BspACI | CCGC | 4 cut(s) | 313, 315, 506, 527 |
| BspCNI | CTCAG | 1 cut(s) | 490 |
| BspDI | ATCGAT | 1 cut(s) | 97 |
| BspFNI | CGCG | 1 cut(s) | 315 |
| BspPI | GGATC | 1 cut(s) | 446 |
| BsrI | ACTGG | 1 cut(s) | 351 |
| BssECI | CCNNGG | 2 cut(s) | 18, 313 |
| BssMI | GATC | 3 cut(s) | 91, 98, 451 |
| BssT1I | CCWWGG | 1 cut(s) | 18 |
| Bst4CI | ACNGT | 3 cut(s) | 123, 133, 265 |
| Bst6I | CTCTTC | 1 cut(s) | 399 |
| BstBAI | YACGTR | 1 cut(s) | 535 |
| BstDEI | CTNAG | 2 cut(s) | 27, 477 |
| BstDSI | CCRYGG | 1 cut(s) | 313 |
| BstEII | GGTNACC | 1 cut(s) | 346 |
| BstFNI | CGCG | 1 cut(s) | 315 |
| BstKTI | GATC | 3 cut(s) | 94, 101, 454 |
| BstMBI | GATC | 3 cut(s) | 91, 98, 451 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 512 |
| BstNSI | RCATGY | 1 cut(s) | 245 |
| BstPI | GGTNACC | 1 cut(s) | 346 |
| BstSCI | CCNGG | 1 cut(s) | 397 |
| BstSNI | TACGTA | 1 cut(s) | 535 |
| BstUI | CGCG | 1 cut(s) | 315 |
| Bsu15I | ATCGAT | 1 cut(s) | 97 |
| BsuI | GTATCC | 1 cut(s) | 320 |
| BsuTUI | ATCGAT | 1 cut(s) | 97 |
| BtgI | CCRYGG | 1 cut(s) | 313 |
| BtgZI | GCGATG | 1 cut(s) | 48 |
| BtsIMutI | CAGTG | 1 cut(s) | 358 |
| Cfr42I | CCGCGG | 1 cut(s) | 316 |
| ClaI | ATCGAT | 1 cut(s) | 97 |
| Csp6I | GTAC | 4 cut(s) | 7, 536, 543, 555 |
| CviAII | CATG | 3 cut(s) | 229, 242, 337 |
| CviJI | RGCY | 5 cut(s) | 26, 83, 115, 522, 530 |
| CviKI_1 | RGCY | 5 cut(s) | 26, 83, 115, 522, 530 |
| CviQI | GTAC | 4 cut(s) | 7, 536, 543, 555 |
| DdeI | CTNAG | 2 cut(s) | 27, 477 |
| DpnI | GATC | 3 cut(s) | 93, 100, 453 |
| DpnII | GATC | 3 cut(s) | 91, 98, 451 |
| Eam1104I | CTCTTC | 1 cut(s) | 399 |
| EarI | CTCTTC | 1 cut(s) | 399 |
| Eco105I | TACGTA | 1 cut(s) | 535 |
| Eco130I | CCWWGG | 1 cut(s) | 18 |
| Eco57I | CTGAAG | 1 cut(s) | 267 |
| Eco91I | GGTNACC | 1 cut(s) | 346 |
| EcoO65I | GGTNACC | 1 cut(s) | 346 |
| EcoT14I | CCWWGG | 1 cut(s) | 18 |
| ErhI | CCWWGG | 1 cut(s) | 18 |
| FaeI | CATG | 3 cut(s) | 232, 245, 340 |
| FaiI | YATR | 9 cut(s) | 164, 213, 224, 230, 243, 302, 338, 426, 491 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 34, 261, 293 |
| FatI | CATG | 3 cut(s) | 228, 241, 336 |
| FblI | GTMKAC | 1 cut(s) | 494 |
| Fnu4HI | GCNGC | 2 cut(s) | 507, 528 |
| Fsp4HI | GCNGC | 2 cut(s) | 507, 528 |
| GluI | GCNGC | 2 cut(s) | 507, 528 |
| HapII | CCGG | 1 cut(s) | 398 |
| Hin1II | CATG | 3 cut(s) | 232, 245, 340 |
| HinfI | GANTC | 1 cut(s) | 481 |
| HpaII | CCGG | 1 cut(s) | 398 |
| HphI | GGTGA | 2 cut(s) | 101, 413 |
| Hpy166II | GTNNAC | 1 cut(s) | 495 |
| Hpy188I | TCNGA | 4 cut(s) | 238, 286, 376, 480 |
| Hpy188III | TCNNGA | 1 cut(s) | 62 |
| Hpy8I | GTNNAC | 1 cut(s) | 495 |
| Hpy99I | CGWCG | 3 cut(s) | 89, 489, 543 |
| HpyAV | CCTTC | 2 cut(s) | 194, 496 |
| HpyCH4III | ACNGT | 3 cut(s) | 123, 133, 265 |
| HpyCH4IV | ACGT | 3 cut(s) | 5, 534, 538 |
| HpyCH4V | TGCA | 2 cut(s) | 268, 515 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 512 |
| HpyF3I | CTNAG | 2 cut(s) | 27, 477 |
| HpySE526I | ACGT | 3 cut(s) | 5, 534, 538 |
| Hsp92II | CATG | 3 cut(s) | 232, 245, 340 |
| KspI | CCGCGG | 1 cut(s) | 316 |
| Kzo9I | GATC | 3 cut(s) | 91, 98, 451 |
| LmnI | GCTCC | 3 cut(s) | 120, 238, 400 |
| LpnPI | CCDG | 4 cut(s) | 125, 329, 364, 411 |
| LweI | GCATC | 2 cut(s) | 286, 482 |
| MaeII | ACGT | 3 cut(s) | 5, 534, 538 |
| MaeIII | GTNAC | 3 cut(s) | 250, 259, 346 |
| MalI | GATC | 3 cut(s) | 93, 100, 453 |
| MboI | GATC | 3 cut(s) | 91, 98, 451 |
| MboII | GAAGA | 3 cut(s) | 101, 416, 440 |
| MhlI | GDGCHC | 1 cut(s) | 397 |
| MluCI | AATT | 4 cut(s) | 53, 69, 75, 324 |
| MlyI | GAGTC | 1 cut(s) | 475 |
| MmeI | TCCRAC | 3 cut(s) | 142, 216, 479 |
| MnlI | CCTC | 7 cut(s) | 16, 114, 117, 280, 361, 400, 436 |
| MroXI | GAANNNNTTC | 1 cut(s) | 69 |
| MseI | TTAA | 2 cut(s) | 189, 327 |
| MspA1I | CMGCKG | 1 cut(s) | 315 |
| MspI | CCGG | 1 cut(s) | 398 |
| MspR9I | CCNGG | 1 cut(s) | 399 |
| Mva1269I | GAATGC | 2 cut(s) | 223, 517 |
| MvnI | CGCG | 1 cut(s) | 315 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 512 |
| NciI | CCSGG | 1 cut(s) | 399 |
| NdeII | GATC | 3 cut(s) | 91, 98, 451 |
| NlaIII | CATG | 3 cut(s) | 232, 245, 340 |
| NmuCI | GTSAC | 1 cut(s) | 259 |
| NspI | RCATGY | 1 cut(s) | 245 |
| PctI | GAATGC | 2 cut(s) | 223, 517 |
| PdmI | GAANNNNTTC | 1 cut(s) | 69 |
| Pfl23II | CGTACG | 1 cut(s) | 535 |
| PkrI | GCNGC | 2 cut(s) | 508, 529 |
| PleI | GAGTC | 1 cut(s) | 475 |
| PpsI | GAGTC | 1 cut(s) | 475 |
| Ppu21I | YACGTR | 1 cut(s) | 535 |
| PshBI | ATTAAT | 1 cut(s) | 327 |
| PspEI | GGTNACC | 1 cut(s) | 346 |
| PspLI | CGTACG | 1 cut(s) | 535 |
| RsaI | GTAC | 4 cut(s) | 8, 537, 544, 556 |
| RsaNI | GTAC | 4 cut(s) | 7, 536, 543, 555 |
| SacII | CCGCGG | 1 cut(s) | 316 |
| SaqAI | TTAA | 2 cut(s) | 189, 327 |
| SatI | GCNGC | 2 cut(s) | 507, 528 |
| Sau3AI | GATC | 3 cut(s) | 91, 98, 451 |
| ScaI | AGTACT | 1 cut(s) | 556 |
| SchI | GAGTC | 1 cut(s) | 475 |
| ScrFI | CCNGG | 1 cut(s) | 399 |
| SduI | GDGCHC | 1 cut(s) | 397 |
| SfaNI | GCATC | 2 cut(s) | 286, 482 |
| Sfr303I | CCGCGG | 1 cut(s) | 316 |
| SgrBI | CCGCGG | 1 cut(s) | 316 |
| SmlI | CTYRAG | 1 cut(s) | 149 |
| SmoI | CTYRAG | 1 cut(s) | 149 |
| SnaBI | TACGTA | 1 cut(s) | 535 |
| Sse9I | AATT | 4 cut(s) | 53, 69, 75, 324 |
| SsiI | CCGC | 4 cut(s) | 313, 315, 506, 527 |
| StyD4I | CCNGG | 1 cut(s) | 397 |
| StyI | CCWWGG | 1 cut(s) | 18 |
| TaaI | ACNGT | 3 cut(s) | 123, 133, 265 |
| TaiI | ACGT | 3 cut(s) | 8, 537, 541 |
| TaqI | TCGA | 2 cut(s) | 87, 97 |
| TasI | AATT | 4 cut(s) | 53, 69, 75, 324 |
| TatI | WGTACW | 1 cut(s) | 554 |
| TauI | GCSGC | 2 cut(s) | 509, 530 |
| Tru1I | TTAA | 2 cut(s) | 189, 327 |
| Tru9I | TTAA | 2 cut(s) | 189, 327 |
| TscAI | CASTG | 1 cut(s) | 358 |
| TseFI | GTSAC | 1 cut(s) | 259 |
| Tsp45I | GTSAC | 1 cut(s) | 259 |
| TspDTI | ATGAA | 1 cut(s) | 441 |
| TspRI | CASTG | 1 cut(s) | 358 |
| VspI | ATTAAT | 1 cut(s) | 327 |
| XapI | RAATTY | 1 cut(s) | 69 |
| XceI | RCATGY | 1 cut(s) | 245 |
| XmiI | GTMKAC | 1 cut(s) | 494 |
| XmnI | GAANNNNTTC | 1 cut(s) | 69 |
| ZrmI | AGTACT | 1 cut(s) | 556 |