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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 537 |
| Acc36I | ACCTGC | 2 cut(s) | 6, 533 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 244, 413 |
| AcsI | RAATTY | 4 cut(s) | 139, 203, 398, 530 |
| AcuI | CTGAAG | 1 cut(s) | 390 |
| AcyI | GRCGYC | 1 cut(s) | 91 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 244, 413 |
| AflIII | ACRYGT | 1 cut(s) | 315 |
| AgsI | TTSAA | 1 cut(s) | 25 |
| AjnI | CCWGG | 1 cut(s) | 237 |
| AluBI | AGCT | 2 cut(s) | 30, 516 |
| AluI | AGCT | 2 cut(s) | 30, 516 |
| Alw21I | GWGCWC | 1 cut(s) | 32 |
| Alw26I | GTCTC | 1 cut(s) | 324 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 244 |
| AoxI | GGCC | 2 cut(s) | 228, 433 |
| ApaI | GGGCCC | 1 cut(s) | 437 |
| ApeKI | GCWGC | 2 cut(s) | 513, 516 |
| ApoI | RAATTY | 4 cut(s) | 139, 203, 398, 530 |
| AseI | ATTAAT | 1 cut(s) | 270 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 216 |
| AspS9I | GGNCC | 2 cut(s) | 433, 434 |
| AxyI | CCTNAGG | 2 cut(s) | 156, 174 |
| BaeGI | GKGCMC | 1 cut(s) | 437 |
| BanII | GRGCYC | 2 cut(s) | 32, 437 |
| Bbv12I | GWGCWC | 1 cut(s) | 32 |
| BbvI | GCAGC | 2 cut(s) | 503, 525 |
| BccI | CCATC | 2 cut(s) | 106, 356 |
| BceAI | ACGGC | 1 cut(s) | 215 |
| BciT130I | CCWGG | 1 cut(s) | 239 |
| BclI | TGATCA | 3 cut(s) | 7, 190, 327 |
| BcoDI | GTCTC | 1 cut(s) | 324 |
| BfuAI | ACCTGC | 2 cut(s) | 6, 533 |
| BisI | GCNGC | 2 cut(s) | 514, 517 |
| BlsI | GCNGC | 2 cut(s) | 515, 518 |
| Bme1390I | CCNGG | 1 cut(s) | 239 |
| BmgT120I | GGNCC | 2 cut(s) | 433, 434 |
| BmiI | GGNNCC | 1 cut(s) | 435 |
| BmrFI | CCNGG | 1 cut(s) | 239 |
| BpmI | CTGGAG | 1 cut(s) | 390 |
| BpuEI | CTTGAG | 1 cut(s) | 36 |
| BsaHI | GRCGYC | 1 cut(s) | 91 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 244, 413 |
| Bse1I | ACTGG | 2 cut(s) | 249, 407 |
| Bse21I | CCTNAGG | 2 cut(s) | 156, 174 |
| Bse3DI | GCAATG | 1 cut(s) | 447 |
| BseBI | CCWGG | 1 cut(s) | 239 |
| BseGI | GGATG | 1 cut(s) | 348 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 244, 413 |
| BseMI | GCAATG | 1 cut(s) | 447 |
| BseMII | CTCAG | 4 cut(s) | 123, 165, 170, 216 |
| BseNI | ACTGG | 2 cut(s) | 249, 407 |
| BseRI | GAGGAG | 1 cut(s) | 312 |
| BseSI | GKGCMC | 1 cut(s) | 437 |
| BseXI | GCAGC | 2 cut(s) | 503, 525 |
| BshFI | GGCC | 2 cut(s) | 230, 435 |
| BsiHKAI | GWGCWC | 1 cut(s) | 32 |
| BslFI | GGGAC | 1 cut(s) | 90 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 244, 413 |
| BsmAI | GTCTC | 1 cut(s) | 324 |
| BsmFI | GGGAC | 1 cut(s) | 90 |
| BsnI | GGCC | 2 cut(s) | 230, 435 |
| Bsp120I | GGGCCC | 1 cut(s) | 433 |
| Bsp1286I | GDGCHC | 2 cut(s) | 32, 437 |
| Bsp143I | GATC | 4 cut(s) | 7, 190, 259, 327 |
| BspANI | GGCC | 2 cut(s) | 230, 435 |
| BspCNI | CTCAG | 4 cut(s) | 124, 166, 169, 217 |
| BspLI | GGNNCC | 1 cut(s) | 435 |
| BspMI | ACCTGC | 2 cut(s) | 6, 533 |
| BspQI | GCTCTTC | 1 cut(s) | 20 |
| BsrDI | GCAATG | 1 cut(s) | 447 |
| BsrI | ACTGG | 2 cut(s) | 249, 407 |
| BssMI | GATC | 4 cut(s) | 7, 190, 259, 327 |
| BssNI | GRCGYC | 1 cut(s) | 91 |
| Bst2UI | CCWGG | 1 cut(s) | 239 |
| Bst4CI | ACNGT | 1 cut(s) | 442 |
| Bst6I | CTCTTC | 1 cut(s) | 20 |
| BstACI | GRCGYC | 1 cut(s) | 91 |
| BstC8I | GCNNGC | 1 cut(s) | 358 |
| BstDEI | CTNAG | 4 cut(s) | 132, 156, 174, 225 |
| BstF5I | GGATG | 1 cut(s) | 348 |
| BstKTI | GATC | 4 cut(s) | 10, 193, 262, 330 |
| BstMAI | GTCTC | 1 cut(s) | 324 |
| BstMBI | GATC | 4 cut(s) | 7, 190, 259, 327 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 353, 525 |
| BstNI | CCWGG | 1 cut(s) | 239 |
| BstNSI | RCATGY | 1 cut(s) | 319 |
| BstSCI | CCNGG | 1 cut(s) | 237 |
| BstSLI | GKGCMC | 1 cut(s) | 437 |
| BstV1I | GCAGC | 2 cut(s) | 503, 525 |
| Bsu36I | CCTNAGG | 2 cut(s) | 156, 174 |
| BsuRI | GGCC | 2 cut(s) | 230, 435 |
| BtsCI | GGATG | 1 cut(s) | 348 |
| BtsI | GCAGTG | 1 cut(s) | 381 |
| BtsIMutI | CAGTG | 2 cut(s) | 222, 381 |
| BveI | ACCTGC | 2 cut(s) | 6, 533 |
| Cac8I | GCNNGC | 1 cut(s) | 358 |
| CaiI | CAGNNNCTG | 1 cut(s) | 244 |
| Cfr13I | GGNCC | 2 cut(s) | 433, 434 |
| CseI | GACGC | 1 cut(s) | 80 |
| CviAII | CATG | 1 cut(s) | 316 |
| CviJI | RGCY | 7 cut(s) | 30, 116, 230, 295, 435, 490, 516 |
| CviKI_1 | RGCY | 7 cut(s) | 30, 116, 230, 295, 435, 490, 516 |
| DdeI | CTNAG | 4 cut(s) | 132, 156, 174, 225 |
| DpnI | GATC | 4 cut(s) | 9, 192, 261, 329 |
| DpnII | GATC | 4 cut(s) | 7, 190, 259, 327 |
| Eam1104I | CTCTTC | 1 cut(s) | 20 |
| EarI | CTCTTC | 1 cut(s) | 20 |
| Ecl136II | GAGCTC | 1 cut(s) | 30 |
| Eco24I | GRGCYC | 2 cut(s) | 32, 437 |
| Eco53kI | GAGCTC | 1 cut(s) | 30 |
| Eco57I | CTGAAG | 1 cut(s) | 390 |
| Eco81I | CCTNAGG | 2 cut(s) | 156, 174 |
| EcoICRI | GAGCTC | 1 cut(s) | 30 |
| EcoO109I | RGGNCCY | 2 cut(s) | 433, 434 |
| EcoRII | CCWGG | 1 cut(s) | 237 |
| EcoT38I | GRGCYC | 2 cut(s) | 32, 437 |
| FaeI | CATG | 1 cut(s) | 319 |
| FaiI | YATR | 5 cut(s) | 60, 281, 317, 487, 537 |
| FaqI | GGGAC | 1 cut(s) | 90 |
| FatI | CATG | 1 cut(s) | 315 |
| FbaI | TGATCA | 3 cut(s) | 7, 190, 327 |
| Fnu4HI | GCNGC | 2 cut(s) | 514, 517 |
| FokI | GGATG | 1 cut(s) | 335 |
| FriOI | GRGCYC | 2 cut(s) | 32, 437 |
| Fsp4HI | GCNGC | 2 cut(s) | 514, 517 |
| GluI | GCNGC | 2 cut(s) | 514, 517 |
| GsuI | CTGGAG | 1 cut(s) | 390 |
| HaeIII | GGCC | 2 cut(s) | 230, 435 |
| HgaI | GACGC | 1 cut(s) | 80 |
| Hin1I | GRCGYC | 1 cut(s) | 91 |
| Hin1II | CATG | 1 cut(s) | 319 |
| HincII | GTYRAC | 3 cut(s) | 235, 286, 382 |
| HindII | GTYRAC | 3 cut(s) | 235, 286, 382 |
| Hpy166II | GTNNAC | 5 cut(s) | 121, 235, 286, 382, 445 |
| Hpy188I | TCNGA | 3 cut(s) | 133, 195, 327 |
| Hpy188III | TCNNGA | 3 cut(s) | 22, 53, 95 |
| Hpy8I | GTNNAC | 5 cut(s) | 121, 235, 286, 382, 445 |
| HpyAV | CCTTC | 1 cut(s) | 461 |
| HpyCH4III | ACNGT | 1 cut(s) | 442 |
| HpyCH4V | TGCA | 6 cut(s) | 15, 163, 182, 356, 513, 528 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 353, 525 |
| HpyF3I | CTNAG | 4 cut(s) | 132, 156, 174, 225 |
| Hsp92I | GRCGYC | 1 cut(s) | 91 |
| Hsp92II | CATG | 1 cut(s) | 319 |
| Ksp22I | TGATCA | 3 cut(s) | 7, 190, 327 |
| Kzo9I | GATC | 4 cut(s) | 7, 190, 259, 327 |
| LguI | GCTCTTC | 1 cut(s) | 20 |
| LmnI | GCTCC | 1 cut(s) | 409 |
| Lsp1109I | GCAGC | 2 cut(s) | 503, 525 |
| MalI | GATC | 4 cut(s) | 9, 192, 261, 329 |
| MboI | GATC | 4 cut(s) | 7, 190, 259, 327 |
| MboII | GAAGA | 3 cut(s) | 37, 224, 470 |
| MhlI | GDGCHC | 2 cut(s) | 32, 437 |
| MluCI | AATT | 4 cut(s) | 139, 203, 398, 530 |
| MmeI | TCCRAC | 1 cut(s) | 394 |
| MnlI | CCTC | 5 cut(s) | 165, 169, 220, 333, 424 |
| MroXI | GAANNNNTTC | 1 cut(s) | 216 |
| MseI | TTAA | 3 cut(s) | 69, 270, 494 |
| MspA1I | CMGCKG | 1 cut(s) | 516 |
| MspR9I | CCNGG | 1 cut(s) | 239 |
| MvaI | CCWGG | 1 cut(s) | 239 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 353, 525 |
| NdeII | GATC | 4 cut(s) | 7, 190, 259, 327 |
| NlaIII | CATG | 1 cut(s) | 319 |
| NlaIV | GGNNCC | 1 cut(s) | 435 |
| NspI | RCATGY | 1 cut(s) | 319 |
| PciI | ACATGT | 1 cut(s) | 315 |
| PciSI | GCTCTTC | 1 cut(s) | 20 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 88 |
| PdmI | GAANNNNTTC | 1 cut(s) | 216 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 244, 413 |
| PkrI | GCNGC | 2 cut(s) | 515, 518 |
| PscI | ACATGT | 1 cut(s) | 315 |
| PshBI | ATTAAT | 1 cut(s) | 270 |
| PsiI | TTATAA | 1 cut(s) | 537 |
| Psp124BI | GAGCTC | 1 cut(s) | 32 |
| Psp6I | CCWGG | 1 cut(s) | 237 |
| PspGI | CCWGG | 1 cut(s) | 237 |
| PspN4I | GGNNCC | 1 cut(s) | 435 |
| PspOMI | GGGCCC | 1 cut(s) | 433 |
| PspPI | GGNCC | 2 cut(s) | 433, 434 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 201, 233 |
| PstNI | CAGNNNCTG | 1 cut(s) | 244 |
| PvuII | CAGCTG | 1 cut(s) | 516 |
| SacI | GAGCTC | 1 cut(s) | 32 |
| SapI | GCTCTTC | 1 cut(s) | 20 |
| SaqAI | TTAA | 3 cut(s) | 69, 270, 494 |
| SatI | GCNGC | 2 cut(s) | 514, 517 |
| Sau3AI | GATC | 4 cut(s) | 7, 190, 259, 327 |
| Sau96I | GGNCC | 2 cut(s) | 433, 434 |
| ScrFI | CCNGG | 1 cut(s) | 239 |
| SduI | GDGCHC | 2 cut(s) | 32, 437 |
| SetI | ASST | 8 cut(s) | 20, 32, 66, 129, 162, 180, 518, 527 |
| SmlI | CTYRAG | 1 cut(s) | 51 |
| SmoI | CTYRAG | 1 cut(s) | 51 |
| Sse9I | AATT | 4 cut(s) | 139, 203, 398, 530 |
| SstI | GAGCTC | 1 cut(s) | 32 |
| StyD4I | CCNGG | 1 cut(s) | 237 |
| TaaI | ACNGT | 1 cut(s) | 442 |
| TasI | AATT | 4 cut(s) | 139, 203, 398, 530 |
| Tru1I | TTAA | 3 cut(s) | 69, 270, 494 |
| Tru9I | TTAA | 3 cut(s) | 69, 270, 494 |
| TscAI | CASTG | 2 cut(s) | 229, 381 |
| TseI | GCWGC | 2 cut(s) | 513, 516 |
| TspDTI | ATGAA | 4 cut(s) | 288, 411, 471, 480 |
| TspRI | CASTG | 2 cut(s) | 229, 381 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 244, 413 |
| VspI | ATTAAT | 1 cut(s) | 270 |
| XapI | RAATTY | 4 cut(s) | 139, 203, 398, 530 |
| XceI | RCATGY | 1 cut(s) | 319 |
| XmnI | GAANNNNTTC | 1 cut(s) | 216 |