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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 445 |
| AciI | CCGC | 4 cut(s) | 287, 301, 443, 543 |
| AcsI | RAATTY | 1 cut(s) | 379 |
| AfaI | GTAC | 2 cut(s) | 87, 580 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 478, 583 |
| AgsI | TTSAA | 3 cut(s) | 137, 206, 461 |
| AluBI | AGCT | 5 cut(s) | 133, 202, 277, 405, 527 |
| AluI | AGCT | 5 cut(s) | 133, 202, 277, 405, 527 |
| Alw21I | GWGCWC | 1 cut(s) | 259 |
| Alw26I | GTCTC | 5 cut(s) | 117, 153, 458, 519, 595 |
| Ama87I | CYCGRG | 1 cut(s) | 142 |
| AoxI | GGCC | 1 cut(s) | 298 |
| ApeKI | GCWGC | 1 cut(s) | 241 |
| ApoI | RAATTY | 1 cut(s) | 379 |
| AspA2I | CCTAGG | 1 cut(s) | 38 |
| AspLEI | GCGC | 1 cut(s) | 576 |
| AspS9I | GGNCC | 1 cut(s) | 59 |
| AsuHPI | GGTGA | 3 cut(s) | 65, 115, 500 |
| AvaI | CYCGRG | 1 cut(s) | 142 |
| AvaII | GGWCC | 1 cut(s) | 59 |
| AvrII | CCTAGG | 1 cut(s) | 38 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 394, 426 |
| Bbv12I | GWGCWC | 1 cut(s) | 259 |
| BbvCI | CCTCAGC | 1 cut(s) | 357 |
| BbvI | GCAGC | 1 cut(s) | 228 |
| BccI | CCATC | 2 cut(s) | 44, 385 |
| BceAI | ACGGC | 1 cut(s) | 561 |
| BclI | TGATCA | 2 cut(s) | 97, 109 |
| BcoDI | GTCTC | 5 cut(s) | 117, 153, 458, 519, 595 |
| BfaI | CTAG | 1 cut(s) | 39 |
| BfmI | CTRYAG | 1 cut(s) | 411 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 548 |
| BisI | GCNGC | 3 cut(s) | 242, 301, 543 |
| BlnI | CCTAGG | 1 cut(s) | 38 |
| BlsI | GCNGC | 3 cut(s) | 243, 302, 544 |
| Bme18I | GGWCC | 1 cut(s) | 59 |
| BmeT110I | CYCGRG | 1 cut(s) | 142 |
| BmgT120I | GGNCC | 1 cut(s) | 59 |
| BmsI | GCATC | 2 cut(s) | 316, 560 |
| BpmI | CTGGAG | 1 cut(s) | 66 |
| Bpu10I | CCTNAGC | 1 cut(s) | 357 |
| BpuEI | CTTGAG | 1 cut(s) | 324 |
| BsaAI | YACGTR | 1 cut(s) | 89 |
| BsaI | GGTCTC | 1 cut(s) | 153 |
| BsaJI | CCNNGG | 4 cut(s) | 38, 141, 210, 546 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 478, 583 |
| Bse1I | ACTGG | 2 cut(s) | 83, 308 |
| BseDI | CCNNGG | 4 cut(s) | 38, 141, 210, 546 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 478, 583 |
| BseMII | CTCAG | 2 cut(s) | 348, 542 |
| BseNI | ACTGG | 2 cut(s) | 83, 308 |
| BseRI | GAGGAG | 1 cut(s) | 491 |
| BseXI | GCAGC | 1 cut(s) | 228 |
| BshFI | GGCC | 1 cut(s) | 300 |
| BsiHKAI | GWGCWC | 1 cut(s) | 259 |
| BsiHKCI | CYCGRG | 1 cut(s) | 142 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 478, 583 |
| BsmAI | GTCTC | 5 cut(s) | 117, 153, 458, 519, 595 |
| BsmI | GAATGC | 2 cut(s) | 157, 303 |
| BsnI | GGCC | 1 cut(s) | 300 |
| Bso31I | GGTCTC | 1 cut(s) | 153 |
| BsoBI | CYCGRG | 1 cut(s) | 142 |
| Bsp1286I | GDGCHC | 1 cut(s) | 259 |
| Bsp143I | GATC | 2 cut(s) | 97, 109 |
| BspACI | CCGC | 4 cut(s) | 287, 301, 443, 543 |
| BspANI | GGCC | 1 cut(s) | 300 |
| BspCNI | CTCAG | 2 cut(s) | 349, 541 |
| BspTNI | GGTCTC | 1 cut(s) | 153 |
| BsrBI | CCGCTC | 1 cut(s) | 445 |
| BsrI | ACTGG | 2 cut(s) | 83, 308 |
| BssECI | CCNNGG | 4 cut(s) | 38, 141, 210, 546 |
| BssMI | GATC | 2 cut(s) | 97, 109 |
| BssT1I | CCWWGG | 2 cut(s) | 38, 546 |
| Bst4CI | ACNGT | 1 cut(s) | 499 |
| Bst6I | CTCTTC | 1 cut(s) | 456 |
| BstBAI | YACGTR | 1 cut(s) | 89 |
| BstDEI | CTNAG | 3 cut(s) | 357, 528, 582 |
| BstHHI | GCGC | 1 cut(s) | 576 |
| BstKTI | GATC | 2 cut(s) | 100, 112 |
| BstMAI | GTCTC | 5 cut(s) | 117, 153, 458, 519, 595 |
| BstMBI | GATC | 2 cut(s) | 97, 109 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 422, 548 |
| BstNSI | RCATGY | 2 cut(s) | 320, 350 |
| BstSFI | CTRYAG | 1 cut(s) | 411 |
| BstV1I | GCAGC | 1 cut(s) | 228 |
| BsuRI | GGCC | 1 cut(s) | 300 |
| CfoI | GCGC | 1 cut(s) | 576 |
| Cfr13I | GGNCC | 1 cut(s) | 59 |
| CseI | GACGC | 1 cut(s) | 524 |
| Csp6I | GTAC | 2 cut(s) | 86, 579 |
| CviAII | CATG | 3 cut(s) | 317, 347, 473 |
| CviQI | GTAC | 2 cut(s) | 86, 579 |
| DdeI | CTNAG | 3 cut(s) | 357, 528, 582 |
| DpnI | GATC | 2 cut(s) | 99, 111 |
| DpnII | GATC | 2 cut(s) | 97, 109 |
| Eam1104I | CTCTTC | 1 cut(s) | 456 |
| EarI | CTCTTC | 1 cut(s) | 456 |
| EciI | GGCGGA | 1 cut(s) | 302 |
| Eco130I | CCWWGG | 2 cut(s) | 38, 546 |
| Eco31I | GGTCTC | 1 cut(s) | 153 |
| Eco47I | GGWCC | 1 cut(s) | 59 |
| Eco88I | CYCGRG | 1 cut(s) | 142 |
| EcoO109I | RGGNCCY | 1 cut(s) | 59 |
| EcoRI | GAATTC | 1 cut(s) | 379 |
| EcoT14I | CCWWGG | 2 cut(s) | 38, 546 |
| EcoT22I | ATGCAT | 1 cut(s) | 352 |
| ErhI | CCWWGG | 2 cut(s) | 38, 546 |
| FaeI | CATG | 3 cut(s) | 320, 350, 476 |
| FaiI | YATR | 8 cut(s) | 165, 318, 348, 365, 367, 474, 570, 572 |
| FatI | CATG | 3 cut(s) | 316, 346, 472 |
| FbaI | TGATCA | 2 cut(s) | 97, 109 |
| Fnu4HI | GCNGC | 3 cut(s) | 242, 301, 543 |
| Fsp4HI | GCNGC | 3 cut(s) | 242, 301, 543 |
| FspBI | CTAG | 1 cut(s) | 39 |
| GlaI | GCGC | 1 cut(s) | 575 |
| GluI | GCNGC | 3 cut(s) | 242, 301, 543 |
| GsuI | CTGGAG | 1 cut(s) | 66 |
| HaeIII | GGCC | 1 cut(s) | 300 |
| HgaI | GACGC | 1 cut(s) | 524 |
| HhaI | GCGC | 1 cut(s) | 576 |
| Hin1II | CATG | 3 cut(s) | 320, 350, 476 |
| Hin6I | GCGC | 1 cut(s) | 574 |
| HinP1I | GCGC | 1 cut(s) | 574 |
| HindIII | AAGCTT | 1 cut(s) | 275 |
| HphI | GGTGA | 3 cut(s) | 65, 115, 500 |
| Hpy166II | GTNNAC | 1 cut(s) | 495 |
| Hpy188I | TCNGA | 2 cut(s) | 214, 531 |
| Hpy188III | TCNNGA | 1 cut(s) | 341 |
| Hpy8I | GTNNAC | 1 cut(s) | 495 |
| HpyAV | CCTTC | 6 cut(s) | 50, 72, 170, 290, 392, 479 |
| HpyCH4III | ACNGT | 1 cut(s) | 499 |
| HpyCH4IV | ACGT | 1 cut(s) | 88 |
| HpyCH4V | TGCA | 4 cut(s) | 73, 155, 236, 350 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 422, 548 |
| HpyF3I | CTNAG | 3 cut(s) | 357, 528, 582 |
| HpySE526I | ACGT | 1 cut(s) | 88 |
| Hsp92II | CATG | 3 cut(s) | 320, 350, 476 |
| HspAI | GCGC | 1 cut(s) | 574 |
| Ksp22I | TGATCA | 2 cut(s) | 97, 109 |
| Kzo9I | GATC | 2 cut(s) | 97, 109 |
| LmnI | GCTCC | 2 cut(s) | 214, 249 |
| LpnPI | CCDG | 8 cut(s) | 86, 96, 98, 141, 222, 265, 315, 321 |
| Lsp1109I | GCAGC | 1 cut(s) | 228 |
| LweI | GCATC | 2 cut(s) | 316, 560 |
| MaeI | CTAG | 1 cut(s) | 39 |
| MaeII | ACGT | 1 cut(s) | 88 |
| MaeIII | GTNAC | 1 cut(s) | 103 |
| MalI | GATC | 2 cut(s) | 99, 111 |
| MbiI | CCGCTC | 1 cut(s) | 445 |
| MboI | GATC | 2 cut(s) | 97, 109 |
| MboII | GAAGA | 2 cut(s) | 18, 473 |
| MhlI | GDGCHC | 1 cut(s) | 259 |
| MluCI | AATT | 4 cut(s) | 12, 370, 379, 451 |
| MnlI | CCTC | 6 cut(s) | 151, 220, 352, 469, 472, 556 |
| Mph1103I | ATGCAT | 1 cut(s) | 352 |
| MseI | TTAA | 1 cut(s) | 504 |
| MslI | CAYNNNNRTG | 1 cut(s) | 321 |
| Mva1269I | GAATGC | 2 cut(s) | 157, 303 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 422, 548 |
| NdeII | GATC | 2 cut(s) | 97, 109 |
| NlaIII | CATG | 3 cut(s) | 320, 350, 476 |
| NmuCI | GTSAC | 1 cut(s) | 103 |
| NsiI | ATGCAT | 1 cut(s) | 352 |
| NspI | RCATGY | 2 cut(s) | 320, 350 |
| PctI | GAATGC | 2 cut(s) | 157, 303 |
| PkrI | GCNGC | 3 cut(s) | 243, 302, 544 |
| Ppu21I | YACGTR | 1 cut(s) | 89 |
| PpuMI | RGGWCCY | 1 cut(s) | 59 |
| Psp5II | RGGWCCY | 1 cut(s) | 59 |
| PspPI | GGNCC | 1 cut(s) | 59 |
| PspPPI | RGGWCCY | 1 cut(s) | 59 |
| RsaI | GTAC | 2 cut(s) | 87, 580 |
| RsaNI | GTAC | 2 cut(s) | 86, 579 |
| RseI | CAYNNNNRTG | 1 cut(s) | 321 |
| SaqAI | TTAA | 1 cut(s) | 504 |
| SatI | GCNGC | 3 cut(s) | 242, 301, 543 |
| Sau3AI | GATC | 2 cut(s) | 97, 109 |
| Sau96I | GGNCC | 1 cut(s) | 59 |
| SduI | GDGCHC | 1 cut(s) | 259 |
| SfaNI | GCATC | 2 cut(s) | 316, 560 |
| SfcI | CTRYAG | 1 cut(s) | 411 |
| SinI | GGWCC | 1 cut(s) | 59 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 321 |
| SmlI | CTYRAG | 1 cut(s) | 339 |
| SmoI | CTYRAG | 1 cut(s) | 339 |
| Sse9I | AATT | 4 cut(s) | 12, 370, 379, 451 |
| SsiI | CCGC | 4 cut(s) | 287, 301, 443, 543 |
| SspMI | CTAG | 1 cut(s) | 39 |
| StyI | CCWWGG | 2 cut(s) | 38, 546 |
| TaaI | ACNGT | 1 cut(s) | 499 |
| TaiI | ACGT | 1 cut(s) | 91 |
| TasI | AATT | 4 cut(s) | 12, 370, 379, 451 |
| TauI | GCSGC | 2 cut(s) | 303, 545 |
| Tru1I | TTAA | 1 cut(s) | 504 |
| Tru9I | TTAA | 1 cut(s) | 504 |
| TseFI | GTSAC | 1 cut(s) | 103 |
| TseI | GCWGC | 1 cut(s) | 241 |
| Tsp45I | GTSAC | 1 cut(s) | 103 |
| TspDTI | ATGAA | 2 cut(s) | 54, 372 |
| TspGWI | ACGGA | 1 cut(s) | 196 |
| VpaK11BI | GGWCC | 1 cut(s) | 59 |
| XapI | RAATTY | 1 cut(s) | 379 |
| XceI | RCATGY | 2 cut(s) | 320, 350 |
| XmaJI | CCTAGG | 1 cut(s) | 38 |
| XspI | CTAG | 1 cut(s) | 39 |
| Zsp2I | ATGCAT | 1 cut(s) | 352 |