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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 279, 431, 679 |
| AccII | CGCG | 1 cut(s) | 337 |
| AciI | CCGC | 2 cut(s) | 216, 485 |
| AcoI | YGGCCR | 1 cut(s) | 327 |
| AcsI | RAATTY | 2 cut(s) | 198, 644 |
| AfaI | GTAC | 2 cut(s) | 70, 483 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 436 |
| AgsI | TTSAA | 6 cut(s) | 22, 313, 357, 611, 685, 695 |
| AjnI | CCWGG | 1 cut(s) | 143 |
| AluBI | AGCT | 3 cut(s) | 527, 629, 755 |
| AluI | AGCT | 3 cut(s) | 527, 629, 755 |
| Alw21I | GWGCWC | 2 cut(s) | 261, 376 |
| Alw26I | GTCTC | 1 cut(s) | 337 |
| Alw44I | GTGCAC | 1 cut(s) | 372 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 210 |
| Ama87I | CYCGRG | 1 cut(s) | 498 |
| AoxI | GGCC | 1 cut(s) | 327 |
| ApaLI | GTGCAC | 1 cut(s) | 372 |
| ApeKI | GCWGC | 2 cut(s) | 98, 204 |
| ApoI | RAATTY | 2 cut(s) | 198, 644 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 350, 382 |
| AspS9I | GGNCC | 2 cut(s) | 443, 655 |
| AsuC2I | CCSGG | 2 cut(s) | 489, 653 |
| AsuHPI | GGTGA | 3 cut(s) | 178, 496, 653 |
| AvaI | CYCGRG | 1 cut(s) | 498 |
| AvaII | GGWCC | 2 cut(s) | 443, 655 |
| BaeGI | GKGCMC | 1 cut(s) | 376 |
| Bbv12I | GWGCWC | 2 cut(s) | 261, 376 |
| BbvI | GCAGC | 2 cut(s) | 85, 216 |
| BccI | CCATC | 3 cut(s) | 21, 427, 469 |
| BceAI | ACGGC | 1 cut(s) | 231 |
| BciT130I | CCWGG | 1 cut(s) | 145 |
| BcnI | CCSGG | 2 cut(s) | 489, 653 |
| BcoDI | GTCTC | 1 cut(s) | 337 |
| BfaI | CTAG | 3 cut(s) | 531, 548, 630 |
| BfmI | CTRYAG | 1 cut(s) | 252 |
| BfuAI | ACCTGC | 3 cut(s) | 279, 431, 679 |
| BisI | GCNGC | 3 cut(s) | 99, 205, 217 |
| BlsI | GCNGC | 3 cut(s) | 100, 206, 218 |
| Bme1390I | CCNGG | 3 cut(s) | 145, 489, 653 |
| Bme18I | GGWCC | 2 cut(s) | 443, 655 |
| BmeT110I | CYCGRG | 1 cut(s) | 498 |
| BmgT120I | GGNCC | 2 cut(s) | 443, 655 |
| BmrFI | CCNGG | 3 cut(s) | 145, 489, 653 |
| BmrI | ACTGGG | 1 cut(s) | 503 |
| BmsI | GCATC | 4 cut(s) | 216, 226, 228, 394 |
| BmuI | ACTGGG | 1 cut(s) | 503 |
| BpuEI | CTTGAG | 1 cut(s) | 133 |
| BpuMI | CCSGG | 2 cut(s) | 489, 653 |
| Bsa29I | ATCGAT | 1 cut(s) | 16 |
| BsaBI | GATNNNNATC | 2 cut(s) | 384, 591 |
| BsaJI | CCNNGG | 2 cut(s) | 144, 651 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 147, 177 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 436 |
| Bse118I | RCCGGY | 1 cut(s) | 45 |
| Bse1I | ACTGG | 3 cut(s) | 509, 606, 733 |
| Bse8I | GATNNNNATC | 2 cut(s) | 384, 591 |
| BseBI | CCWGG | 1 cut(s) | 145 |
| BseCI | ATCGAT | 1 cut(s) | 16 |
| BseDI | CCNNGG | 2 cut(s) | 144, 651 |
| BseGI | GGATG | 3 cut(s) | 241, 456, 461 |
| BseJI | GATNNNNATC | 2 cut(s) | 384, 591 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 436 |
| BseMII | CTCAG | 2 cut(s) | 63, 148 |
| BseNI | ACTGG | 3 cut(s) | 509, 606, 733 |
| BseSI | GKGCMC | 1 cut(s) | 376 |
| BseXI | GCAGC | 2 cut(s) | 85, 216 |
| Bsh1236I | CGCG | 1 cut(s) | 337 |
| BshFI | GGCC | 1 cut(s) | 329 |
| BshVI | ATCGAT | 1 cut(s) | 16 |
| BsiHKAI | GWGCWC | 2 cut(s) | 261, 376 |
| BsiHKCI | CYCGRG | 1 cut(s) | 498 |
| BsiSI | CCGG | 3 cut(s) | 46, 489, 653 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 436 |
| BsmAI | GTCTC | 1 cut(s) | 337 |
| BsmBI | CGTCTC | 1 cut(s) | 337 |
| BsnI | GGCC | 1 cut(s) | 329 |
| BsoBI | CYCGRG | 1 cut(s) | 498 |
| Bsp1286I | GDGCHC | 2 cut(s) | 261, 376 |
| Bsp143I | GATC | 2 cut(s) | 168, 302 |
| BspACI | CCGC | 2 cut(s) | 216, 485 |
| BspANI | GGCC | 1 cut(s) | 329 |
| BspCNI | CTCAG | 2 cut(s) | 64, 147 |
| BspDI | ATCGAT | 1 cut(s) | 16 |
| BspFNI | CGCG | 1 cut(s) | 337 |
| BspMAI | CTGCAG | 1 cut(s) | 256 |
| BspMI | ACCTGC | 3 cut(s) | 279, 431, 679 |
| BsrFI | RCCGGY | 1 cut(s) | 45 |
| BsrI | ACTGG | 3 cut(s) | 509, 606, 733 |
| BssAI | RCCGGY | 1 cut(s) | 45 |
| BssECI | CCNNGG | 2 cut(s) | 144, 651 |
| BssMI | GATC | 2 cut(s) | 168, 302 |
| Bst2UI | CCWGG | 1 cut(s) | 145 |
| Bst4CI | ACNGT | 2 cut(s) | 394, 479 |
| Bst6I | CTCTTC | 1 cut(s) | 630 |
| BstC8I | GCNNGC | 3 cut(s) | 88, 92, 96 |
| BstDEI | CTNAG | 3 cut(s) | 72, 134, 761 |
| BstF5I | GGATG | 3 cut(s) | 241, 456, 461 |
| BstFNI | CGCG | 1 cut(s) | 337 |
| BstKTI | GATC | 2 cut(s) | 171, 305 |
| BstMAI | GTCTC | 1 cut(s) | 337 |
| BstMBI | GATC | 2 cut(s) | 168, 302 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 213 |
| BstNI | CCWGG | 1 cut(s) | 145 |
| BstSCI | CCNGG | 3 cut(s) | 143, 487, 651 |
| BstSFI | CTRYAG | 1 cut(s) | 252 |
| BstSLI | GKGCMC | 1 cut(s) | 376 |
| BstUI | CGCG | 1 cut(s) | 337 |
| BstV1I | GCAGC | 2 cut(s) | 85, 216 |
| Bsu15I | ATCGAT | 1 cut(s) | 16 |
| BsuRI | GGCC | 1 cut(s) | 329 |
| BsuTUI | ATCGAT | 1 cut(s) | 16 |
| BtsCI | GGATG | 3 cut(s) | 241, 456, 461 |
| BtsI | GCAGTG | 1 cut(s) | 261 |
| BtsIMutI | CAGTG | 4 cut(s) | 261, 484, 599, 726 |
| BveI | ACCTGC | 3 cut(s) | 279, 431, 679 |
| Cac8I | GCNNGC | 3 cut(s) | 88, 92, 96 |
| CaiI | CAGNNNCTG | 1 cut(s) | 210 |
| Cfr10I | RCCGGY | 1 cut(s) | 45 |
| Cfr13I | GGNCC | 2 cut(s) | 443, 655 |
| ClaI | ATCGAT | 1 cut(s) | 16 |
| Csp6I | GTAC | 2 cut(s) | 69, 482 |
| CviAII | CATG | 3 cut(s) | 243, 596, 748 |
| CviJI | RGCY | 8 cut(s) | 86, 193, 329, 527, 554, 629, 737, 755 |
| CviKI_1 | RGCY | 8 cut(s) | 86, 193, 329, 527, 554, 629, 737, 755 |
| CviQI | GTAC | 2 cut(s) | 69, 482 |
| DdeI | CTNAG | 3 cut(s) | 72, 134, 761 |
| DpnI | GATC | 2 cut(s) | 170, 304 |
| DpnII | GATC | 2 cut(s) | 168, 302 |
| EaeI | YGGCCR | 1 cut(s) | 327 |
| Eam1104I | CTCTTC | 1 cut(s) | 630 |
| EarI | CTCTTC | 1 cut(s) | 630 |
| Eco47I | GGWCC | 2 cut(s) | 443, 655 |
| Eco88I | CYCGRG | 1 cut(s) | 498 |
| EcoRII | CCWGG | 1 cut(s) | 143 |
| Esp3I | CGTCTC | 1 cut(s) | 337 |
| FaeI | CATG | 3 cut(s) | 246, 599, 751 |
| FaiI | YATR | 8 cut(s) | 29, 183, 244, 264, 561, 597, 749, 772 |
| FatI | CATG | 3 cut(s) | 242, 595, 747 |
| Fnu4HI | GCNGC | 3 cut(s) | 99, 205, 217 |
| FokI | GGATG | 3 cut(s) | 248, 443, 448 |
| Fsp4HI | GCNGC | 3 cut(s) | 99, 205, 217 |
| FspBI | CTAG | 3 cut(s) | 531, 548, 630 |
| GluI | GCNGC | 3 cut(s) | 99, 205, 217 |
| HaeIII | GGCC | 1 cut(s) | 329 |
| HapII | CCGG | 3 cut(s) | 46, 489, 653 |
| Hin1II | CATG | 3 cut(s) | 246, 599, 751 |
| HincII | GTYRAC | 1 cut(s) | 543 |
| HindII | GTYRAC | 1 cut(s) | 543 |
| HindIII | AAGCTT | 1 cut(s) | 525 |
| HinfI | GANTC | 8 cut(s) | 4, 18, 56, 280, 349, 411, 467, 501 |
| HpaII | CCGG | 3 cut(s) | 46, 489, 653 |
| HphI | GGTGA | 3 cut(s) | 178, 496, 653 |
| Hpy166II | GTNNAC | 6 cut(s) | 69, 374, 446, 482, 543, 722 |
| Hpy188I | TCNGA | 5 cut(s) | 61, 173, 390, 427, 466 |
| Hpy188III | TCNNGA | 3 cut(s) | 22, 136, 682 |
| Hpy8I | GTNNAC | 6 cut(s) | 69, 374, 446, 482, 543, 722 |
| HpyAV | CCTTC | 3 cut(s) | 111, 432, 579 |
| HpyCH4III | ACNGT | 2 cut(s) | 394, 479 |
| HpyCH4IV | ACGT | 1 cut(s) | 539 |
| HpyCH4V | TGCA | 5 cut(s) | 31, 204, 254, 374, 599 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 213 |
| HpyF3I | CTNAG | 3 cut(s) | 72, 134, 761 |
| HpySE526I | ACGT | 1 cut(s) | 539 |
| Hsp92II | CATG | 3 cut(s) | 246, 599, 751 |
| Kzo9I | GATC | 2 cut(s) | 168, 302 |
| LmnI | GCTCC | 2 cut(s) | 264, 752 |
| Lsp1109I | GCAGC | 2 cut(s) | 85, 216 |
| LweI | GCATC | 4 cut(s) | 216, 226, 228, 394 |
| MaeI | CTAG | 3 cut(s) | 531, 548, 630 |
| MaeII | ACGT | 1 cut(s) | 539 |
| MaeIII | GTNAC | 3 cut(s) | 473, 502, 580 |
| MalI | GATC | 2 cut(s) | 170, 304 |
| MboI | GATC | 2 cut(s) | 168, 302 |
| MboII | GAAGA | 2 cut(s) | 325, 647 |
| MhlI | GDGCHC | 2 cut(s) | 261, 376 |
| MluCI | AATT | 3 cut(s) | 198, 396, 644 |
| MlyI | GAGTC | 3 cut(s) | 289, 405, 510 |
| MmeI | TCCRAC | 1 cut(s) | 60 |
| MnlI | CCTC | 9 cut(s) | 67, 73, 100, 397, 430, 507, 565, 631, 668 |
| MseI | TTAA | 2 cut(s) | 399, 564 |
| MslI | CAYNNNNRTG | 2 cut(s) | 234, 746 |
| MspI | CCGG | 3 cut(s) | 46, 489, 653 |
| MspR9I | CCNGG | 3 cut(s) | 145, 489, 653 |
| MvaI | CCWGG | 1 cut(s) | 145 |
| MvnI | CGCG | 1 cut(s) | 337 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 213 |
| NciI | CCSGG | 2 cut(s) | 489, 653 |
| NdeII | GATC | 2 cut(s) | 168, 302 |
| NlaIII | CATG | 3 cut(s) | 246, 599, 751 |
| NmuCI | GTSAC | 3 cut(s) | 473, 502, 580 |
| PaeR7I | CTCGAG | 1 cut(s) | 498 |
| PfeI | GAWTC | 5 cut(s) | 4, 18, 56, 349, 467 |
| PkrI | GCNGC | 3 cut(s) | 100, 206, 218 |
| PleI | GAGTC | 3 cut(s) | 288, 405, 509 |
| PpsI | GAGTC | 3 cut(s) | 288, 405, 509 |
| Psp6I | CCWGG | 1 cut(s) | 143 |
| PspGI | CCWGG | 1 cut(s) | 143 |
| PspPI | GGNCC | 2 cut(s) | 443, 655 |
| PspXI | VCTCGAGB | 1 cut(s) | 498 |
| PstI | CTGCAG | 1 cut(s) | 256 |
| PstNI | CAGNNNCTG | 1 cut(s) | 210 |
| RsaI | GTAC | 2 cut(s) | 70, 483 |
| RsaNI | GTAC | 2 cut(s) | 69, 482 |
| RseI | CAYNNNNRTG | 2 cut(s) | 234, 746 |
| SaqAI | TTAA | 2 cut(s) | 399, 564 |
| SatI | GCNGC | 3 cut(s) | 99, 205, 217 |
| Sau3AI | GATC | 2 cut(s) | 168, 302 |
| Sau96I | GGNCC | 2 cut(s) | 443, 655 |
| SchI | GAGTC | 3 cut(s) | 289, 405, 510 |
| ScrFI | CCNGG | 3 cut(s) | 145, 489, 653 |
| SduI | GDGCHC | 2 cut(s) | 261, 376 |
| SfaNI | GCATC | 4 cut(s) | 216, 226, 228, 394 |
| SfcI | CTRYAG | 1 cut(s) | 252 |
| Sfr274I | CTCGAG | 1 cut(s) | 498 |
| SinI | GGWCC | 2 cut(s) | 443, 655 |
| SlaI | CTCGAG | 1 cut(s) | 498 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 234, 746 |
| SmlI | CTYRAG | 2 cut(s) | 112, 498 |
| SmoI | CTYRAG | 2 cut(s) | 112, 498 |
| Sse9I | AATT | 3 cut(s) | 198, 396, 644 |
| SsiI | CCGC | 2 cut(s) | 216, 485 |
| SspMI | CTAG | 3 cut(s) | 531, 548, 630 |
| StyD4I | CCNGG | 3 cut(s) | 143, 487, 651 |
| TaaI | ACNGT | 2 cut(s) | 394, 479 |
| TaiI | ACGT | 1 cut(s) | 542 |
| TaqI | TCGA | 2 cut(s) | 16, 499 |
| TasI | AATT | 3 cut(s) | 198, 396, 644 |
| TatI | WGTACW | 1 cut(s) | 68 |
| TauI | GCSGC | 1 cut(s) | 219 |
| TfiI | GAWTC | 5 cut(s) | 4, 18, 56, 349, 467 |
| Tru1I | TTAA | 2 cut(s) | 399, 564 |
| Tru9I | TTAA | 2 cut(s) | 399, 564 |
| TscAI | CASTG | 4 cut(s) | 261, 484, 606, 733 |
| TseFI | GTSAC | 3 cut(s) | 473, 502, 580 |
| TseI | GCWGC | 2 cut(s) | 98, 204 |
| Tsp45I | GTSAC | 3 cut(s) | 473, 502, 580 |
| TspDTI | ATGAA | 3 cut(s) | 17, 198, 231 |
| TspGWI | ACGGA | 1 cut(s) | 361 |
| TspRI | CASTG | 4 cut(s) | 261, 484, 606, 733 |
| VneI | GTGCAC | 1 cut(s) | 372 |
| VpaK11BI | GGWCC | 2 cut(s) | 443, 655 |
| XapI | RAATTY | 2 cut(s) | 198, 644 |
| XhoI | CTCGAG | 1 cut(s) | 498 |
| XspI | CTAG | 3 cut(s) | 531, 548, 630 |