ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 956 |
| Acc65I | GGTACC | 1 cut(s) | 23 |
| AccB1I | GGYRCC | 3 cut(s) | 23, 155, 363 |
| AccBSI | CCGCTC | 1 cut(s) | 1047 |
| AccI | GTMKAC | 1 cut(s) | 306 |
| AccII | CGCG | 2 cut(s) | 959, 1020 |
| AciI | CCGC | 7 cut(s) | 682, 897, 957, 987, 1018, 1045, 1084 |
| AclI | AACGTT | 1 cut(s) | 856 |
| AcsI | RAATTY | 3 cut(s) | 109, 405, 637 |
| AcuI | CTGAAG | 2 cut(s) | 555, 924 |
| AfaI | GTAC | 1 cut(s) | 25 |
| AgsI | TTSAA | 5 cut(s) | 90, 108, 317, 356, 854 |
| AjnI | CCWGG | 1 cut(s) | 601 |
| AluBI | AGCT | 6 cut(s) | 234, 866, 894, 969, 993, 1063 |
| AluI | AGCT | 6 cut(s) | 234, 866, 894, 969, 993, 1063 |
| AoxI | GGCC | 4 cut(s) | 329, 599, 941, 1091 |
| ApeKI | GCWGC | 8 cut(s) | 94, 507, 894, 961, 977, 1009, 1075, 1106 |
| ApoI | RAATTY | 3 cut(s) | 109, 405, 637 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 835 |
| Asp718I | GGTACC | 1 cut(s) | 23 |
| AspLEI | GCGC | 2 cut(s) | 961, 1022 |
| AsuHPI | GGTGA | 1 cut(s) | 710 |
| AsuNHI | GCTAGC | 1 cut(s) | 1063 |
| BaeGI | GKGCMC | 1 cut(s) | 160 |
| BanI | GGYRCC | 3 cut(s) | 23, 155, 363 |
| BanII | GRGCYC | 1 cut(s) | 465 |
| BauI | CACGAG | 1 cut(s) | 180 |
| BbvI | GCAGC | 8 cut(s) | 106, 494, 881, 948, 989, 1021, 1087, 1093 |
| BccI | CCATC | 3 cut(s) | 595, 619, 659 |
| BceAI | ACGGC | 1 cut(s) | 351 |
| BciT130I | CCWGG | 1 cut(s) | 603 |
| BclI | TGATCA | 1 cut(s) | 240 |
| BfaI | CTAG | 6 cut(s) | 458, 567, 983, 1064, 1080, 1111 |
| BfmI | CTRYAG | 4 cut(s) | 975, 1007, 1033, 1073 |
| BfuAI | ACCTGC | 1 cut(s) | 956 |
| Bme1390I | CCNGG | 1 cut(s) | 603 |
| BmiI | GGNNCC | 3 cut(s) | 25, 157, 365 |
| BmrFI | CCNGG | 1 cut(s) | 603 |
| BmtI | GCTAGC | 1 cut(s) | 1067 |
| BpmI | CTGGAG | 3 cut(s) | 681, 981, 1033 |
| BpuEI | CTTGAG | 2 cut(s) | 449, 858 |
| Bsa29I | ATCGAT | 1 cut(s) | 559 |
| Bse1I | ACTGG | 1 cut(s) | 944 |
| BseBI | CCWGG | 1 cut(s) | 603 |
| BseCI | ATCGAT | 1 cut(s) | 559 |
| BseGI | GGATG | 3 cut(s) | 243, 630, 736 |
| BseMII | CTCAG | 1 cut(s) | 212 |
| BseNI | ACTGG | 1 cut(s) | 944 |
| BseRI | GAGGAG | 1 cut(s) | 735 |
| BseSI | GKGCMC | 1 cut(s) | 160 |
| BseXI | GCAGC | 8 cut(s) | 106, 494, 881, 948, 989, 1021, 1087, 1093 |
| BseYI | CCCAGC | 2 cut(s) | 510, 965 |
| Bsh1236I | CGCG | 2 cut(s) | 959, 1020 |
| BshFI | GGCC | 4 cut(s) | 331, 601, 943, 1093 |
| BshNI | GGYRCC | 3 cut(s) | 23, 155, 363 |
| BshVI | ATCGAT | 1 cut(s) | 559 |
| BsmI | GAATGC | 2 cut(s) | 85, 97 |
| BsnI | GGCC | 4 cut(s) | 331, 601, 943, 1093 |
| Bsp1286I | GDGCHC | 2 cut(s) | 160, 465 |
| Bsp143I | GATC | 1 cut(s) | 240 |
| BspACI | CCGC | 7 cut(s) | 682, 897, 957, 987, 1018, 1045, 1084 |
| BspANI | GGCC | 4 cut(s) | 331, 601, 943, 1093 |
| BspCNI | CTCAG | 1 cut(s) | 211 |
| BspDI | ATCGAT | 1 cut(s) | 559 |
| BspFNI | CGCG | 2 cut(s) | 959, 1020 |
| BspLI | GGNNCC | 3 cut(s) | 25, 157, 365 |
| BspMAI | CTGCAG | 3 cut(s) | 979, 1011, 1077 |
| BspMI | ACCTGC | 1 cut(s) | 956 |
| BspOI | GCTAGC | 1 cut(s) | 1067 |
| BspT107I | GGYRCC | 3 cut(s) | 23, 155, 363 |
| BsrBI | CCGCTC | 1 cut(s) | 1047 |
| BsrI | ACTGG | 1 cut(s) | 944 |
| BssMI | GATC | 1 cut(s) | 240 |
| BssNAI | GTATAC | 1 cut(s) | 307 |
| BssSI | CACGAG | 1 cut(s) | 180 |
| Bst1107I | GTATAC | 1 cut(s) | 307 |
| Bst2BI | CACGAG | 1 cut(s) | 180 |
| Bst2UI | CCWGG | 1 cut(s) | 603 |
| Bst4CI | ACNGT | 1 cut(s) | 1042 |
| Bst6I | CTCTTC | 2 cut(s) | 71, 900 |
| BstC8I | GCNNGC | 8 cut(s) | 176, 868, 953, 957, 971, 975, 991, 1065 |
| BstDEI | CTNAG | 4 cut(s) | 33, 60, 198, 777 |
| BstF5I | GGATG | 3 cut(s) | 243, 630, 736 |
| BstFNI | CGCG | 2 cut(s) | 959, 1020 |
| BstHHI | GCGC | 2 cut(s) | 961, 1022 |
| BstKTI | GATC | 1 cut(s) | 243 |
| BstMBI | GATC | 1 cut(s) | 240 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 91, 716, 894, 961, 970, 983, 986, 1044 |
| BstNI | CCWGG | 1 cut(s) | 603 |
| BstNSI | RCATGY | 1 cut(s) | 301 |
| BstSCI | CCNGG | 1 cut(s) | 601 |
| BstSFI | CTRYAG | 4 cut(s) | 975, 1007, 1033, 1073 |
| BstSLI | GKGCMC | 1 cut(s) | 160 |
| BstUI | CGCG | 2 cut(s) | 959, 1020 |
| BstV1I | GCAGC | 8 cut(s) | 106, 494, 881, 948, 989, 1021, 1087, 1093 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 301, 756, 939 |
| BstZ17I | GTATAC | 1 cut(s) | 307 |
| Bsu15I | ATCGAT | 1 cut(s) | 559 |
| BsuRI | GGCC | 4 cut(s) | 331, 601, 943, 1093 |
| BsuTUI | ATCGAT | 1 cut(s) | 559 |
| BtsCI | GGATG | 3 cut(s) | 243, 630, 736 |
| BtsIMutI | CAGTG | 1 cut(s) | 937 |
| BveI | ACCTGC | 1 cut(s) | 956 |
| Cac8I | GCNNGC | 8 cut(s) | 176, 868, 953, 957, 971, 975, 991, 1065 |
| CfoI | GCGC | 2 cut(s) | 961, 1022 |
| ClaI | ATCGAT | 1 cut(s) | 559 |
| CseI | GACGC | 1 cut(s) | 722 |
| Csp6I | GTAC | 1 cut(s) | 24 |
| CviAII | CATG | 3 cut(s) | 145, 170, 298 |
| CviQI | GTAC | 1 cut(s) | 24 |
| DdeI | CTNAG | 4 cut(s) | 33, 60, 198, 777 |
| DpnI | GATC | 1 cut(s) | 242 |
| DpnII | GATC | 1 cut(s) | 240 |
| Eam1104I | CTCTTC | 2 cut(s) | 71, 900 |
| EarI | CTCTTC | 2 cut(s) | 71, 900 |
| Eco24I | GRGCYC | 1 cut(s) | 465 |
| Eco57I | CTGAAG | 2 cut(s) | 555, 924 |
| EcoRI | GAATTC | 2 cut(s) | 405, 637 |
| EcoRII | CCWGG | 1 cut(s) | 601 |
| EcoT22I | ATGCAT | 1 cut(s) | 87 |
| EcoT38I | GRGCYC | 1 cut(s) | 465 |
| FaeI | CATG | 3 cut(s) | 148, 173, 301 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 784, 816 |
| FatI | CATG | 3 cut(s) | 144, 169, 297 |
| FauI | CCCGC | 2 cut(s) | 675, 964 |
| FauNDI | CATATG | 1 cut(s) | 580 |
| FbaI | TGATCA | 1 cut(s) | 240 |
| FblI | GTMKAC | 1 cut(s) | 306 |
| FokI | GGATG | 3 cut(s) | 250, 637, 723 |
| FriOI | GRGCYC | 1 cut(s) | 465 |
| FspBI | CTAG | 6 cut(s) | 458, 567, 983, 1064, 1080, 1111 |
| GlaI | GCGC | 2 cut(s) | 960, 1021 |
| GsaI | CCCAGC | 2 cut(s) | 514, 969 |
| GsuI | CTGGAG | 3 cut(s) | 681, 981, 1033 |
| HaeIII | GGCC | 4 cut(s) | 331, 601, 943, 1093 |
| HgaI | GACGC | 1 cut(s) | 722 |
| HhaI | GCGC | 2 cut(s) | 961, 1022 |
| Hin1II | CATG | 3 cut(s) | 148, 173, 301 |
| Hin6I | GCGC | 2 cut(s) | 959, 1020 |
| HinP1I | GCGC | 2 cut(s) | 959, 1020 |
| HincII | GTYRAC | 1 cut(s) | 705 |
| HindII | GTYRAC | 1 cut(s) | 705 |
| HinfI | GANTC | 1 cut(s) | 561 |
| HpaI | GTTAAC | 1 cut(s) | 705 |
| HphI | GGTGA | 1 cut(s) | 710 |
| Hpy166II | GTNNAC | 5 cut(s) | 208, 269, 307, 322, 705 |
| Hpy188I | TCNGA | 3 cut(s) | 201, 535, 841 |
| Hpy188III | TCNNGA | 2 cut(s) | 632, 660 |
| Hpy8I | GTNNAC | 5 cut(s) | 208, 269, 307, 322, 705 |
| HpyAV | CCTTC | 2 cut(s) | 530, 808 |
| HpyCH4III | ACNGT | 1 cut(s) | 1042 |
| HpyCH4IV | ACGT | 1 cut(s) | 856 |
| HpyCH4V | TGCA | 5 cut(s) | 85, 951, 977, 1009, 1075 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 91, 716, 894, 961, 970, 983, 986, 1044 |
| HpyF3I | CTNAG | 4 cut(s) | 33, 60, 198, 777 |
| HpySE526I | ACGT | 1 cut(s) | 856 |
| Hsp92II | CATG | 3 cut(s) | 148, 173, 301 |
| HspAI | GCGC | 2 cut(s) | 959, 1020 |
| KpnI | GGTACC | 1 cut(s) | 27 |
| Ksp22I | TGATCA | 1 cut(s) | 240 |
| KspAI | GTTAAC | 1 cut(s) | 705 |
| Kzo9I | GATC | 1 cut(s) | 240 |
| LmnI | GCTCC | 4 cut(s) | 142, 589, 863, 1052 |
| Lsp1109I | GCAGC | 8 cut(s) | 106, 494, 881, 948, 989, 1021, 1087, 1093 |
| MaeI | CTAG | 6 cut(s) | 458, 567, 983, 1064, 1080, 1111 |
| MaeII | ACGT | 1 cut(s) | 856 |
| MaeIII | GTNAC | 1 cut(s) | 368 |
| MalI | GATC | 1 cut(s) | 242 |
| MbiI | CCGCTC | 1 cut(s) | 1047 |
| MboI | GATC | 1 cut(s) | 240 |
| MboII | GAAGA | 5 cut(s) | 88, 470, 582, 840, 917 |
| MfeI | CAATTG | 1 cut(s) | 441 |
| MhlI | GDGCHC | 2 cut(s) | 160, 465 |
| Mph1103I | ATGCAT | 1 cut(s) | 87 |
| MroXI | GAANNNNTTC | 1 cut(s) | 835 |
| MseI | TTAA | 6 cut(s) | 45, 279, 500, 650, 704, 821 |
| MspR9I | CCNGG | 1 cut(s) | 603 |
| MunI | CAATTG | 1 cut(s) | 441 |
| Mva1269I | GAATGC | 2 cut(s) | 85, 97 |
| MvaI | CCWGG | 1 cut(s) | 603 |
| MvnI | CGCG | 2 cut(s) | 959, 1020 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 91, 716, 894, 961, 970, 983, 986, 1044 |
| NdeI | CATATG | 1 cut(s) | 580 |
| NdeII | GATC | 1 cut(s) | 240 |
| NheI | GCTAGC | 1 cut(s) | 1063 |
| NlaIII | CATG | 3 cut(s) | 148, 173, 301 |
| NlaIV | GGNNCC | 3 cut(s) | 25, 157, 365 |
| NmeAIII | GCCGAG | 1 cut(s) | 1069 |
| NsiI | ATGCAT | 1 cut(s) | 87 |
| NspI | RCATGY | 1 cut(s) | 301 |
| PctI | GAATGC | 2 cut(s) | 85, 97 |
| PdmI | GAANNNNTTC | 1 cut(s) | 835 |
| PfeI | GAWTC | 1 cut(s) | 561 |
| Psp1406I | AACGTT | 1 cut(s) | 856 |
| Psp6I | CCWGG | 1 cut(s) | 601 |
| PspFI | CCCAGC | 2 cut(s) | 510, 965 |
| PspGI | CCWGG | 1 cut(s) | 601 |
| PspN4I | GGNNCC | 3 cut(s) | 25, 157, 365 |
| PstI | CTGCAG | 3 cut(s) | 979, 1011, 1077 |
| RsaI | GTAC | 1 cut(s) | 25 |
| RsaNI | GTAC | 1 cut(s) | 24 |
| SaqAI | TTAA | 6 cut(s) | 45, 279, 500, 650, 704, 821 |
| Sau3AI | GATC | 1 cut(s) | 240 |
| ScrFI | CCNGG | 1 cut(s) | 603 |
| SduI | GDGCHC | 2 cut(s) | 160, 465 |
| SfcI | CTRYAG | 4 cut(s) | 975, 1007, 1033, 1073 |
| SmlI | CTYRAG | 2 cut(s) | 464, 873 |
| SmoI | CTYRAG | 2 cut(s) | 464, 873 |
| SsiI | CCGC | 7 cut(s) | 682, 897, 957, 987, 1018, 1045, 1084 |
| SspMI | CTAG | 6 cut(s) | 458, 567, 983, 1064, 1080, 1111 |
| StyD4I | CCNGG | 1 cut(s) | 601 |
| TaaI | ACNGT | 1 cut(s) | 1042 |
| TaiI | ACGT | 1 cut(s) | 859 |
| TaqI | TCGA | 1 cut(s) | 559 |
| TauI | GCSGC | 2 cut(s) | 989, 1086 |
| TfiI | GAWTC | 1 cut(s) | 561 |
| Tru1I | TTAA | 6 cut(s) | 45, 279, 500, 650, 704, 821 |
| Tru9I | TTAA | 6 cut(s) | 45, 279, 500, 650, 704, 821 |
| TscAI | CASTG | 1 cut(s) | 944 |
| TseI | GCWGC | 8 cut(s) | 94, 507, 894, 961, 977, 1009, 1075, 1106 |
| TspDTI | ATGAA | 2 cut(s) | 133, 158 |
| TspRI | CASTG | 1 cut(s) | 944 |
| XapI | RAATTY | 3 cut(s) | 109, 405, 637 |
| XceI | RCATGY | 1 cut(s) | 301 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 594, 936 |
| XmiI | GTMKAC | 1 cut(s) | 306 |
| XmnI | GAANNNNTTC | 1 cut(s) | 835 |
| XspI | CTAG | 6 cut(s) | 458, 567, 983, 1064, 1080, 1111 |
| Zsp2I | ATGCAT | 1 cut(s) | 87 |