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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 302 |
| AccB1I | GGYRCC | 1 cut(s) | 183 |
| AccBSI | CCGCTC | 1 cut(s) | 336 |
| AccII | CGCG | 1 cut(s) | 504 |
| AciI | CCGC | 9 cut(s) | 46, 150, 153, 199, 205, 322, 334, 493, 504 |
| AclWI | GGATC | 3 cut(s) | 30, 250, 515 |
| AcoI | YGGCCR | 2 cut(s) | 47, 459 |
| AcuI | CTGAAG | 1 cut(s) | 468 |
| AcvI | CACGTG | 2 cut(s) | 350, 374 |
| AcyI | GRCGYC | 1 cut(s) | 299 |
| AdeI | CACNNNGTG | 1 cut(s) | 516 |
| AfaI | GTAC | 1 cut(s) | 311 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 205 |
| AflIII | ACRYGT | 2 cut(s) | 349, 371 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 21, 53 |
| AleI | CACNNNNGTG | 1 cut(s) | 181 |
| Alw26I | GTCTC | 8 cut(s) | 13, 102, 136, 290, 353, 437, 520, 525 |
| AlwI | GGATC | 3 cut(s) | 30, 250, 515 |
| AoxI | GGCC | 5 cut(s) | 47, 173, 366, 459, 485 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 49, 81, 139, 171 |
| AsuHPI | GGTGA | 1 cut(s) | 137 |
| BalI | TGGCCA | 1 cut(s) | 461 |
| BanI | GGYRCC | 1 cut(s) | 183 |
| BbrPI | CACGTG | 2 cut(s) | 350, 374 |
| BccI | CCATC | 1 cut(s) | 103 |
| BceAI | ACGGC | 3 cut(s) | 59, 171, 241 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 249, 283 |
| BcoDI | GTCTC | 8 cut(s) | 13, 102, 136, 290, 353, 437, 520, 525 |
| BfaI | CTAG | 3 cut(s) | 26, 60, 303 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 493 |
| BisI | GCNGC | 4 cut(s) | 47, 151, 199, 494 |
| BlsI | GCNGC | 4 cut(s) | 48, 152, 200, 495 |
| BmiI | GGNNCC | 2 cut(s) | 185, 326 |
| BmsI | GCATC | 1 cut(s) | 237 |
| BsaAI | YACGTR | 3 cut(s) | 350, 374, 390 |
| BsaHI | GRCGYC | 1 cut(s) | 299 |
| BsaI | GGTCTC | 3 cut(s) | 13, 102, 525 |
| BsaJI | CCNNGG | 3 cut(s) | 18, 176, 488 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 284, 314, 517 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 205 |
| Bse118I | RCCGGY | 2 cut(s) | 201, 256 |
| Bse3DI | GCAATG | 1 cut(s) | 267 |
| BseDI | CCNNGG | 3 cut(s) | 18, 176, 488 |
| BseGI | GGATG | 1 cut(s) | 114 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 205 |
| BseMI | GCAATG | 1 cut(s) | 267 |
| BseMII | CTCAG | 1 cut(s) | 521 |
| BseRI | GAGGAG | 2 cut(s) | 148, 308 |
| BseX3I | CGGCCG | 1 cut(s) | 47 |
| Bsh1236I | CGCG | 1 cut(s) | 504 |
| Bsh1285I | CGRYCG | 2 cut(s) | 50, 157 |
| BshFI | GGCC | 5 cut(s) | 49, 175, 368, 461, 487 |
| BshNI | GGYRCC | 1 cut(s) | 183 |
| BsiEI | CGRYCG | 2 cut(s) | 50, 157 |
| BsiSI | CCGG | 3 cut(s) | 50, 202, 257 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 205 |
| BsmAI | GTCTC | 8 cut(s) | 13, 102, 136, 290, 353, 437, 520, 525 |
| BsmBI | CGTCTC | 2 cut(s) | 136, 290 |
| BsnI | GGCC | 5 cut(s) | 49, 175, 368, 461, 487 |
| Bso31I | GGTCTC | 3 cut(s) | 13, 102, 525 |
| Bsp143I | GATC | 3 cut(s) | 22, 242, 507 |
| BspACI | CCGC | 9 cut(s) | 46, 150, 153, 199, 205, 322, 334, 493, 504 |
| BspANI | GGCC | 5 cut(s) | 49, 175, 368, 461, 487 |
| BspCNI | CTCAG | 1 cut(s) | 522 |
| BspFNI | CGCG | 1 cut(s) | 504 |
| BspLI | GGNNCC | 2 cut(s) | 185, 326 |
| BspPI | GGATC | 3 cut(s) | 30, 250, 515 |
| BspT107I | GGYRCC | 1 cut(s) | 183 |
| BspTNI | GGTCTC | 3 cut(s) | 13, 102, 525 |
| BsrBI | CCGCTC | 1 cut(s) | 336 |
| BsrDI | GCAATG | 1 cut(s) | 267 |
| BsrFI | RCCGGY | 2 cut(s) | 201, 256 |
| BssAI | RCCGGY | 2 cut(s) | 201, 256 |
| BssECI | CCNNGG | 3 cut(s) | 18, 176, 488 |
| BssMI | GATC | 3 cut(s) | 22, 242, 507 |
| BssNI | GRCGYC | 1 cut(s) | 299 |
| Bst4CI | ACNGT | 1 cut(s) | 180 |
| Bst6I | CTCTTC | 1 cut(s) | 444 |
| BstACI | GRCGYC | 1 cut(s) | 299 |
| BstBAI | YACGTR | 3 cut(s) | 350, 374, 390 |
| BstC8I | GCNNGC | 3 cut(s) | 203, 258, 320 |
| BstDEI | CTNAG | 1 cut(s) | 530 |
| BstDSI | CCRYGG | 2 cut(s) | 18, 176 |
| BstF5I | GGATG | 1 cut(s) | 114 |
| BstFNI | CGCG | 1 cut(s) | 504 |
| BstKTI | GATC | 3 cut(s) | 25, 245, 510 |
| BstMAI | GTCTC | 8 cut(s) | 13, 102, 136, 290, 353, 437, 520, 525 |
| BstMBI | GATC | 3 cut(s) | 22, 242, 507 |
| BstMCI | CGRYCG | 2 cut(s) | 50, 157 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 257, 328, 493 |
| BstSNI | TACGTA | 1 cut(s) | 390 |
| BstUI | CGCG | 1 cut(s) | 504 |
| BstX2I | RGATCY | 1 cut(s) | 22 |
| BstYI | RGATCY | 1 cut(s) | 22 |
| BstZI | CGGCCG | 1 cut(s) | 47 |
| BsuRI | GGCC | 5 cut(s) | 49, 175, 368, 461, 487 |
| BtgI | CCRYGG | 2 cut(s) | 18, 176 |
| BtsCI | GGATG | 1 cut(s) | 114 |
| Cac8I | GCNNGC | 3 cut(s) | 203, 258, 320 |
| Cfr10I | RCCGGY | 2 cut(s) | 201, 256 |
| Csp6I | GTAC | 1 cut(s) | 310 |
| CviAII | CATG | 1 cut(s) | 315 |
| CviJI | RGCY | 7 cut(s) | 49, 175, 198, 251, 368, 461, 487 |
| CviKI_1 | RGCY | 7 cut(s) | 49, 175, 198, 251, 368, 461, 487 |
| CviQI | GTAC | 1 cut(s) | 310 |
| DdeI | CTNAG | 1 cut(s) | 530 |
| DpnI | GATC | 3 cut(s) | 24, 244, 509 |
| DpnII | GATC | 3 cut(s) | 22, 242, 507 |
| DraIII | CACNNNGTG | 1 cut(s) | 516 |
| EaeI | YGGCCR | 2 cut(s) | 47, 459 |
| EagI | CGGCCG | 1 cut(s) | 47 |
| Eam1104I | CTCTTC | 1 cut(s) | 444 |
| EarI | CTCTTC | 1 cut(s) | 444 |
| EclXI | CGGCCG | 1 cut(s) | 47 |
| Eco105I | TACGTA | 1 cut(s) | 390 |
| Eco147I | AGGCCT | 1 cut(s) | 487 |
| Eco31I | GGTCTC | 3 cut(s) | 13, 102, 525 |
| Eco32I | GATATC | 1 cut(s) | 381 |
| Eco52I | CGGCCG | 1 cut(s) | 47 |
| Eco57I | CTGAAG | 1 cut(s) | 468 |
| Eco72I | CACGTG | 2 cut(s) | 350, 374 |
| EcoRV | GATATC | 1 cut(s) | 381 |
| Esp3I | CGTCTC | 2 cut(s) | 136, 290 |
| FaeI | CATG | 1 cut(s) | 318 |
| FaiI | YATR | 4 cut(s) | 316, 393, 542, 544 |
| FatI | CATG | 1 cut(s) | 314 |
| FauI | CCCGC | 2 cut(s) | 198, 497 |
| Fnu4HI | GCNGC | 4 cut(s) | 47, 151, 199, 494 |
| FokI | GGATG | 1 cut(s) | 121 |
| Fsp4HI | GCNGC | 4 cut(s) | 47, 151, 199, 494 |
| FspBI | CTAG | 3 cut(s) | 26, 60, 303 |
| GluI | GCNGC | 4 cut(s) | 47, 151, 199, 494 |
| HaeIII | GGCC | 5 cut(s) | 49, 175, 368, 461, 487 |
| HapII | CCGG | 3 cut(s) | 50, 202, 257 |
| Hin1I | GRCGYC | 1 cut(s) | 299 |
| Hin1II | CATG | 1 cut(s) | 318 |
| HincII | GTYRAC | 1 cut(s) | 355 |
| HindII | GTYRAC | 1 cut(s) | 355 |
| HinfI | GANTC | 3 cut(s) | 14, 136, 532 |
| HpaII | CCGG | 3 cut(s) | 50, 202, 257 |
| HphI | GGTGA | 1 cut(s) | 137 |
| Hpy166II | GTNNAC | 2 cut(s) | 18, 355 |
| Hpy188I | TCNGA | 4 cut(s) | 13, 141, 385, 525 |
| Hpy188III | TCNNGA | 2 cut(s) | 26, 303 |
| Hpy8I | GTNNAC | 2 cut(s) | 18, 355 |
| Hpy99I | CGWCG | 5 cut(s) | 162, 165, 236, 274, 277 |
| HpyAV | CCTTC | 1 cut(s) | 281 |
| HpyCH4III | ACNGT | 1 cut(s) | 180 |
| HpyCH4IV | ACGT | 5 cut(s) | 234, 299, 349, 373, 389 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 257, 328, 493 |
| HpyF3I | CTNAG | 1 cut(s) | 530 |
| HpySE526I | ACGT | 5 cut(s) | 234, 299, 349, 373, 389 |
| Hsp92I | GRCGYC | 1 cut(s) | 299 |
| Hsp92II | CATG | 1 cut(s) | 318 |
| KroI | GCCGGC | 2 cut(s) | 201, 256 |
| KroNI | GCCGGC | 2 cut(s) | 203, 258 |
| Kzo9I | GATC | 3 cut(s) | 22, 242, 507 |
| LpnPI | CCDG | 5 cut(s) | 63, 215, 270, 332, 341 |
| LweI | GCATC | 1 cut(s) | 237 |
| MaeI | CTAG | 3 cut(s) | 26, 60, 303 |
| MaeII | ACGT | 5 cut(s) | 234, 299, 349, 373, 389 |
| MalI | GATC | 3 cut(s) | 24, 244, 509 |
| MbiI | CCGCTC | 1 cut(s) | 336 |
| MboI | GATC | 3 cut(s) | 22, 242, 507 |
| MboII | GAAGA | 1 cut(s) | 461 |
| MflI | RGATCY | 1 cut(s) | 22 |
| MlsI | TGGCCA | 1 cut(s) | 461 |
| MluCI | AATT | 1 cut(s) | 114 |
| MluNI | TGGCCA | 1 cut(s) | 461 |
| MlyI | GAGTC | 3 cut(s) | 23, 145, 541 |
| Mox20I | TGGCCA | 1 cut(s) | 461 |
| MreI | CGCCGGCG | 1 cut(s) | 201 |
| MroNI | GCCGGC | 2 cut(s) | 201, 256 |
| MscI | TGGCCA | 1 cut(s) | 461 |
| MseI | TTAA | 2 cut(s) | 104, 222 |
| MslI | CAYNNNNRTG | 1 cut(s) | 181 |
| Msp20I | TGGCCA | 1 cut(s) | 461 |
| MspA1I | CMGCKG | 1 cut(s) | 322 |
| MspI | CCGG | 3 cut(s) | 50, 202, 257 |
| MvnI | CGCG | 1 cut(s) | 504 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 257, 328, 493 |
| NaeI | GCCGGC | 2 cut(s) | 203, 258 |
| NdeII | GATC | 3 cut(s) | 22, 242, 507 |
| NgoMIV | GCCGGC | 2 cut(s) | 201, 256 |
| NlaIII | CATG | 1 cut(s) | 318 |
| NlaIV | GGNNCC | 2 cut(s) | 185, 326 |
| NmeAIII | GCCGAG | 1 cut(s) | 469 |
| OliI | CACNNNNGTG | 1 cut(s) | 181 |
| PceI | AGGCCT | 1 cut(s) | 487 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 184, 231 |
| PdiI | GCCGGC | 2 cut(s) | 203, 258 |
| PflFI | GACNNNGTC | 1 cut(s) | 531 |
| PkrI | GCNGC | 4 cut(s) | 48, 152, 200, 495 |
| PleI | GAGTC | 3 cut(s) | 22, 144, 540 |
| PmaCI | CACGTG | 2 cut(s) | 350, 374 |
| PmlI | CACGTG | 2 cut(s) | 350, 374 |
| PpsI | GAGTC | 3 cut(s) | 22, 144, 540 |
| Ppu21I | YACGTR | 3 cut(s) | 350, 374, 390 |
| PspCI | CACGTG | 2 cut(s) | 350, 374 |
| PspN4I | GGNNCC | 2 cut(s) | 185, 326 |
| PsuI | RGATCY | 1 cut(s) | 22 |
| PsyI | GACNNNGTC | 1 cut(s) | 531 |
| RsaI | GTAC | 1 cut(s) | 311 |
| RsaNI | GTAC | 1 cut(s) | 310 |
| RseI | CAYNNNNRTG | 1 cut(s) | 181 |
| SaqAI | TTAA | 2 cut(s) | 104, 222 |
| SatI | GCNGC | 4 cut(s) | 47, 151, 199, 494 |
| Sau3AI | GATC | 3 cut(s) | 22, 242, 507 |
| SchI | GAGTC | 3 cut(s) | 23, 145, 541 |
| SetI | ASST | 5 cut(s) | 237, 302, 352, 376, 392 |
| SfaNI | GCATC | 1 cut(s) | 237 |
| SgrAI | CRCCGGYG | 1 cut(s) | 201 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 181 |
| SnaBI | TACGTA | 1 cut(s) | 390 |
| Sse9I | AATT | 1 cut(s) | 114 |
| SseBI | AGGCCT | 1 cut(s) | 487 |
| SsiI | CCGC | 9 cut(s) | 46, 150, 153, 199, 205, 322, 334, 493, 504 |
| SspMI | CTAG | 3 cut(s) | 26, 60, 303 |
| StuI | AGGCCT | 1 cut(s) | 487 |
| TaaI | ACNGT | 1 cut(s) | 180 |
| TaiI | ACGT | 5 cut(s) | 237, 302, 352, 376, 392 |
| TaqI | TCGA | 5 cut(s) | 33, 163, 193, 231, 275 |
| TasI | AATT | 1 cut(s) | 114 |
| TauI | GCSGC | 4 cut(s) | 49, 153, 201, 496 |
| Tru1I | TTAA | 2 cut(s) | 104, 222 |
| Tru9I | TTAA | 2 cut(s) | 104, 222 |
| TspGWI | ACGGA | 1 cut(s) | 35 |
| Tth111I | GACNNNGTC | 1 cut(s) | 531 |
| XbaI | TCTAGA | 2 cut(s) | 25, 302 |
| XspI | CTAG | 3 cut(s) | 26, 60, 303 |
| ZraI | GACGTC | 1 cut(s) | 300 |