Rmu_ssc0000385.1_g000012

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000385.1
OG0000044
Physical Location & Seq
Reverse (-)
45701 .. 47184
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000385.1_g000012.1.cds

Sequence Viewer

Length: 1101 bp
atgggaggcctggacatggcctctgcgcctcctccactagccccaaaatcacgtacttttgagtctgtcctctacaactcaaccgagttggccatatctctcagccaactaccatctccggttgttcgcggggataaaatttatgtcaagatcaatgaatccttatatcaggaacaattgaagcaattcaaaaccaatctcattggtcgtctacttctacgcaagggctataaacctcttaaggctgatgctctaaaaggattggtagctgctctctggcggccttcagagccatggcgcctagtgcctcttggtaaaggctattttgacattcaattttccacagaagaggatctgcgtagggtatggtgtggaggtacttgtactcttcctgatggaatttttcgtttaactcagtggaagcccgattttgttccaggagaaacccttccgcaaactcacgctcaaatttgggttaggttttatggtctgagccaagattattggcaccagcaacatcttatggagatcgctcggggcgtcgggactccattgcaaattgataaaaccacaaaggaacgacatttagggtattttgctcgtgtcttggtagatgttgatcttgcagtcaaggggaaggctggaagttgtggatatatcaagactcctcttattaatgagaataattttgccatccttgcaaacaaggaaattgacgcagtgattgataataattctaatagttctaatgcatctgctcaagatattggtacagccactttagatgaccctacggttcatactactgctgaggatgatgatgttgattgtgattgtgatgatgacataaatgatgaagatgggaggcattactctgcaccaagctccaattcagagcaaaaggcttataatagtgcccagccgtccaaacccctttttccacatagtggtcagagttggcatgatatggtagaagaggaaaatttgactggccaagcagatttaactacatgtcaagctccgccggggttcgaacatgttgcaactttagccagagatgtctcattaattactagacgtggggttcatggagatacatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

366

Amino Acids

40.58

Weight (kDa)

5.23

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 909
AccB1I GGYRCC 2 cut(s) 297, 507
AccB7I CCANNNNNTGG 1 cut(s) 947
AccI GTMKAC 1 cut(s) 211
AccII CGCG 1 cut(s) 129
AciI CCGC 4 cut(s) 129, 280, 452, 1022
AclWI GGATC 1 cut(s) 360
AcoI YGGCCR 2 cut(s) 90, 991
AcsI RAATTY 4 cut(s) 138, 399, 468, 982
AcuI CTGAAG 1 cut(s) 270
AcyI GRCGYC 2 cut(s) 298, 540
AdeI CACNNNGTG 1 cut(s) 947
AfaI GTAC 4 cut(s) 55, 379, 385, 772
AfiI CCNNNNNNNGG 2 cut(s) 16, 947
AflII CTTAAG 1 cut(s) 239
AflIII ACRYGT 2 cut(s) 1010, 1036
AgsI TTSAA 3 cut(s) 181, 190, 335
AjiI CACGTC 1 cut(s) 1079
AjnI CCWGG 2 cut(s) 9, 436
AjuI GAANNNNNNNTTGG 2 cut(s) 874, 906
AluBI AGCT 3 cut(s) 269, 885, 1019
AluI AGCT 3 cut(s) 269, 885, 1019
Alw26I GTCTC 1 cut(s) 1066
AlwI GGATC 1 cut(s) 360
Ama87I CYCGRG 1 cut(s) 534
AoxI GGCC 5 cut(s) 7, 18, 90, 281, 991
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 4 cut(s) 138, 399, 468, 982
AseI ATTAAT 2 cut(s) 675, 1067
Asp700I GAANNNNTTC 2 cut(s) 185, 447
AspLEI GCGC 2 cut(s) 28, 300
AsuC2I CCSGG 1 cut(s) 1026
AsuII TTCGAA 1 cut(s) 1032
AvaI CYCGRG 1 cut(s) 534
BaeGI GKGCMC 1 cut(s) 919
BalI TGGCCA 2 cut(s) 92, 993
BanI GGYRCC 2 cut(s) 297, 507
BauI CACGAG 1 cut(s) 600
BbvCI CCTCAGC 1 cut(s) 810
BbvI GCAGC 1 cut(s) 256
BccI CCATC 4 cut(s) 121, 389, 701, 854
BceAI ACGGC 1 cut(s) 907
BcgI CGANNNNNNTGC 2 cut(s) 1022, 1056
BciT130I CCWGG 2 cut(s) 11, 438
BcnI CCSGG 1 cut(s) 1026
BcoDI GTCTC 1 cut(s) 1066
BfaI CTAG 3 cut(s) 38, 302, 1074
BfoI RGCGCY 1 cut(s) 301
BfrI CTTAAG 1 cut(s) 239
BisI GCNGC 2 cut(s) 270, 281
BlsI GCNGC 2 cut(s) 271, 282
Bme1390I CCNGG 3 cut(s) 11, 438, 1026
BmeT110I CYCGRG 1 cut(s) 534
BmgBI CACGTC 1 cut(s) 1079
BmiI GGNNCC 2 cut(s) 299, 509
BmrFI CCNGG 3 cut(s) 11, 438, 1026
BmsI GCATC 2 cut(s) 238, 761
Bpu10I CCTNAGC 1 cut(s) 810
Bpu14I TTCGAA 1 cut(s) 1032
BpuEI CTTGAG 1 cut(s) 744
BpuMI CCSGG 1 cut(s) 1026
BsaAI YACGTR 1 cut(s) 53
BsaBI GATNNNNATC 1 cut(s) 618
BsaHI GRCGYC 2 cut(s) 298, 540
BsaJI CCNNGG 2 cut(s) 293, 1025
BsaWI WCCGGW 1 cut(s) 118
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 947
Bse1I ACTGG 1 cut(s) 994
Bse3DI GCAATG 1 cut(s) 551
Bse8I GATNNNNATC 1 cut(s) 618
BseBI CCWGG 2 cut(s) 11, 438
BseDI CCNNGG 2 cut(s) 293, 1025
BseGI GGATG 2 cut(s) 693, 820
BseJI GATNNNNATC 1 cut(s) 618
BseLI CCNNNNNNNGG 2 cut(s) 16, 947
BseMI GCAATG 1 cut(s) 551
BseMII CTCAG 4 cut(s) 115, 428, 482, 801
BseNI ACTGG 1 cut(s) 994
BseRI GAGGAG 2 cut(s) 21, 657
BseSI GKGCMC 1 cut(s) 919
BseXI GCAGC 1 cut(s) 256
BseYI CCCAGC 1 cut(s) 918
BsgI GTGCAG 1 cut(s) 861
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 5 cut(s) 9, 20, 92, 283, 993
BshNI GGYRCC 2 cut(s) 297, 507
BsiHKCI CYCGRG 1 cut(s) 534
BsiSI CCGG 2 cut(s) 119, 1025
BslFI GGGAC 1 cut(s) 559
BslI CCNNNNNNNGG 2 cut(s) 16, 947
BsmAI GTCTC 1 cut(s) 1066
BsmFI GGGAC 1 cut(s) 559
BsnI GGCC 5 cut(s) 9, 20, 92, 283, 993
BsoBI CYCGRG 1 cut(s) 534
Bsp119I TTCGAA 1 cut(s) 1032
Bsp1286I GDGCHC 1 cut(s) 919
Bsp143I GATC 4 cut(s) 150, 352, 528, 619
Bsp19I CCATGG 1 cut(s) 293
BspACI CCGC 4 cut(s) 129, 280, 452, 1022
BspANI GGCC 5 cut(s) 9, 20, 92, 283, 993
BspCNI CTCAG 4 cut(s) 114, 427, 483, 802
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 2 cut(s) 299, 509
BspPI GGATC 1 cut(s) 360
BspT104I TTCGAA 1 cut(s) 1032
BspT107I GGYRCC 2 cut(s) 297, 507
BspTI CTTAAG 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 551
BsrI ACTGG 1 cut(s) 994
BssECI CCNNGG 2 cut(s) 293, 1025
BssMI GATC 4 cut(s) 150, 352, 528, 619
BssNI GRCGYC 2 cut(s) 298, 540
BssSI CACGAG 1 cut(s) 600
BssT1I CCWWGG 1 cut(s) 293
Bst2BI CACGAG 1 cut(s) 600
Bst2UI CCWGG 2 cut(s) 11, 438
Bst4CI ACNGT 1 cut(s) 796
Bst6I CTCTTC 3 cut(s) 342, 393, 969
BstACI GRCGYC 2 cut(s) 298, 540
BstAFI CTTAAG 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 53
BstBI TTCGAA 1 cut(s) 1032
BstDEI CTNAG 4 cut(s) 101, 414, 491, 810
BstDSI CCRYGG 1 cut(s) 293
BstF5I GGATG 2 cut(s) 693, 820
BstFNI CGCG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 301
BstHHI GCGC 2 cut(s) 28, 300
BstKTI GATC 4 cut(s) 153, 355, 531, 622
BstMAI GTCTC 1 cut(s) 1066
BstMBI GATC 4 cut(s) 150, 352, 528, 619
BstMWI GCNNNNNNNGC 4 cut(s) 289, 304, 698, 1049
BstNI CCWGG 2 cut(s) 11, 438
BstNSI RCATGY 2 cut(s) 1014, 1040
BstSCI CCNGG 3 cut(s) 9, 436, 1024
BstSLI GKGCMC 1 cut(s) 919
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 5 cut(s) 9, 20, 92, 283, 993
BtgI CCRYGG 1 cut(s) 293
BtrI CACGTC 1 cut(s) 1079
BtsCI GGATG 2 cut(s) 693, 820
BtsI GCAGTG 1 cut(s) 726
BtsIMutI CAGTG 2 cut(s) 422, 726
CfoI GCGC 2 cut(s) 28, 300
CseI GACGC 2 cut(s) 529, 725
Csp6I GTAC 4 cut(s) 54, 378, 384, 771
CviAII CATG 6 cut(s) 16, 294, 962, 1011, 1037, 1088
CviQI GTAC 4 cut(s) 54, 378, 384, 771
DdeI CTNAG 4 cut(s) 101, 414, 491, 810
DinI GGCGCC 1 cut(s) 299
DpnI GATC 4 cut(s) 152, 354, 530, 621
DpnII GATC 4 cut(s) 150, 352, 528, 619
DraIII CACNNNGTG 1 cut(s) 947
EaeI YGGCCR 2 cut(s) 90, 991
Eam1104I CTCTTC 3 cut(s) 342, 393, 969
EarI CTCTTC 3 cut(s) 342, 393, 969
EciI GGCGGA 1 cut(s) 1011
Eco130I CCWWGG 1 cut(s) 293
Eco147I AGGCCT 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 534
EcoRII CCWGG 2 cut(s) 9, 436
EcoT14I CCWWGG 1 cut(s) 293
EcoT22I ATGCAT 1 cut(s) 754
EgeI GGCGCC 1 cut(s) 299
EheI GGCGCC 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 6 cut(s) 19, 297, 965, 1014, 1040, 1091
FaqI GGGAC 1 cut(s) 559
FatI CATG 6 cut(s) 15, 293, 961, 1010, 1036, 1087
FauI CCCGC 1 cut(s) 122
FblI GTMKAC 1 cut(s) 211
Fnu4HI GCNGC 2 cut(s) 270, 281
FokI GGATG 2 cut(s) 680, 827
Fsp4HI GCNGC 2 cut(s) 270, 281
FspBI CTAG 3 cut(s) 38, 302, 1074
GlaI GCGC 2 cut(s) 27, 299
GluI GCNGC 2 cut(s) 270, 281
GsaI CCCAGC 1 cut(s) 922
HaeII RGCGCY 1 cut(s) 301
HaeIII GGCC 5 cut(s) 9, 20, 92, 283, 993
HapII CCGG 2 cut(s) 119, 1025
HgaI GACGC 2 cut(s) 529, 725
HhaI GCGC 2 cut(s) 28, 300
Hin1I GRCGYC 2 cut(s) 298, 540
Hin1II CATG 6 cut(s) 19, 297, 965, 1014, 1040, 1091
Hin6I GCGC 2 cut(s) 26, 298
HinP1I GCGC 2 cut(s) 26, 298
HinfI GANTC 4 cut(s) 62, 158, 547, 664
HpaII CCGG 2 cut(s) 119, 1025
Hpy166II GTNNAC 1 cut(s) 212
Hpy188I TCNGA 4 cut(s) 289, 492, 895, 954
Hpy188III TCNNGA 6 cut(s) 148, 170, 392, 544, 661, 761
Hpy8I GTNNAC 1 cut(s) 212
Hpy99I CGWCG 1 cut(s) 545
HpyAV CCTTC 3 cut(s) 294, 458, 631
HpyCH4III ACNGT 1 cut(s) 796
HpyCH4IV ACGT 2 cut(s) 52, 1078
HpyCH4V TGCA 6 cut(s) 556, 626, 701, 752, 878, 1043
HpyF10VI GCNNNNNNNGC 4 cut(s) 289, 304, 698, 1049
HpyF3I CTNAG 4 cut(s) 101, 414, 491, 810
HpySE526I ACGT 2 cut(s) 52, 1078
Hsp92I GRCGYC 2 cut(s) 298, 540
Hsp92II CATG 6 cut(s) 19, 297, 965, 1014, 1040, 1091
HspAI GCGC 2 cut(s) 26, 298
KasI GGCGCC 1 cut(s) 297
Kzo9I GATC 4 cut(s) 150, 352, 528, 619
LmnI GCTCC 2 cut(s) 890, 1024
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 2 cut(s) 238, 761
MaeI CTAG 3 cut(s) 38, 302, 1074
MaeII ACGT 2 cut(s) 52, 1078
MalI GATC 4 cut(s) 152, 354, 530, 621
MboI GATC 4 cut(s) 150, 352, 528, 619
MboII GAAGA 4 cut(s) 359, 380, 869, 986
MfeI CAATTG 1 cut(s) 176
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 1 cut(s) 919
MlsI TGGCCA 2 cut(s) 92, 993
MluNI TGGCCA 2 cut(s) 92, 993
Mly113I GGCGCC 1 cut(s) 298
MlyI GAGTC 3 cut(s) 71, 541, 658
Mox20I TGGCCA 2 cut(s) 92, 993
Mph1103I ATGCAT 1 cut(s) 754
MroXI GAANNNNTTC 2 cut(s) 185, 447
MscI TGGCCA 2 cut(s) 92, 993
MseI TTAA 5 cut(s) 240, 410, 675, 1004, 1067
Msp20I TGGCCA 2 cut(s) 92, 993
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 2 cut(s) 119, 1025
MspR9I CCNGG 3 cut(s) 11, 438, 1026
MunI CAATTG 1 cut(s) 176
MvaI CCWGG 2 cut(s) 11, 438
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 4 cut(s) 289, 304, 698, 1049
NarI GGCGCC 1 cut(s) 298
NciI CCSGG 1 cut(s) 1026
NcoI CCATGG 1 cut(s) 293
NdeII GATC 4 cut(s) 150, 352, 528, 619
NlaIII CATG 6 cut(s) 19, 297, 965, 1014, 1040, 1091
NlaIV GGNNCC 2 cut(s) 299, 509
NsiI ATGCAT 1 cut(s) 754
NspI RCATGY 2 cut(s) 1014, 1040
NspV TTCGAA 1 cut(s) 1032
PceI AGGCCT 1 cut(s) 9
PciI ACATGT 2 cut(s) 1010, 1036
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PdmI GAANNNNTTC 2 cut(s) 185, 447
PfeI GAWTC 1 cut(s) 158
PflMI CCANNNNNTGG 1 cut(s) 947
PfoI TCCNGGA 1 cut(s) 436
PkrI GCNGC 2 cut(s) 271, 282
PleI GAGTC 3 cut(s) 70, 541, 658
PluTI GGCGCC 1 cut(s) 301
PpsI GAGTC 3 cut(s) 70, 541, 658
Ppu21I YACGTR 1 cut(s) 53
PscI ACATGT 2 cut(s) 1010, 1036
PshBI ATTAAT 2 cut(s) 675, 1067
PsiI TTATAA 1 cut(s) 909
Psp6I CCWGG 2 cut(s) 9, 436
PspFI CCCAGC 1 cut(s) 918
PspGI CCWGG 2 cut(s) 9, 436
PspN4I GGNNCC 2 cut(s) 299, 509
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 4 cut(s) 55, 379, 385, 772
RsaNI GTAC 4 cut(s) 54, 378, 384, 771
SaqAI TTAA 5 cut(s) 240, 410, 675, 1004, 1067
SatI GCNGC 2 cut(s) 270, 281
Sau3AI GATC 4 cut(s) 150, 352, 528, 619
SchI GAGTC 3 cut(s) 71, 541, 658
ScrFI CCNGG 3 cut(s) 11, 438, 1026
SduI GDGCHC 1 cut(s) 919
SetI ASST 8 cut(s) 55, 238, 271, 379, 482, 887, 1021, 1081
SfaNI GCATC 2 cut(s) 238, 761
SfoI GGCGCC 1 cut(s) 299
SfuI TTCGAA 1 cut(s) 1032
SmlI CTYRAG 2 cut(s) 239, 759
SmoI CTYRAG 2 cut(s) 239, 759
SseBI AGGCCT 1 cut(s) 9
SsiI CCGC 4 cut(s) 129, 280, 452, 1022
SspDI GGCGCC 1 cut(s) 297
SspMI CTAG 3 cut(s) 38, 302, 1074
StuI AGGCCT 1 cut(s) 9
StyD4I CCNGG 3 cut(s) 9, 436, 1024
StyI CCWWGG 1 cut(s) 293
TaaI ACNGT 1 cut(s) 796
TaiI ACGT 2 cut(s) 55, 1081
TaqI TCGA 1 cut(s) 1032
TatI WGTACW 1 cut(s) 383
TauI GCSGC 1 cut(s) 283
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 5 cut(s) 240, 410, 675, 1004, 1067
Tru9I TTAA 5 cut(s) 240, 410, 675, 1004, 1067
TscAI CASTG 2 cut(s) 422, 726
TseI GCWGC 1 cut(s) 269
TspDTI ATGAA 4 cut(s) 171, 788, 870, 1076
TspRI CASTG 2 cut(s) 422, 726
Van91I CCANNNNNTGG 1 cut(s) 947
Vha464I CTTAAG 1 cut(s) 239
VspI ATTAAT 2 cut(s) 675, 1067
XapI RAATTY 4 cut(s) 138, 399, 468, 982
XceI RCATGY 2 cut(s) 1014, 1040
XmiI GTMKAC 1 cut(s) 211
XmnI GAANNNNTTC 2 cut(s) 185, 447
XspI CTAG 3 cut(s) 38, 302, 1074
Zsp2I ATGCAT 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.