ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HMA | PF00403 | 7 - 61 | 3.5e-15 | Heavy-metal-associated domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 188 |
| AccI | GTMKAC | 1 cut(s) | 240 |
| AciI | CCGC | 1 cut(s) | 188 |
| AclI | AACGTT | 1 cut(s) | 93 |
| AcsI | RAATTY | 1 cut(s) | 220 |
| AcuI | CTGAAG | 1 cut(s) | 53 |
| AfaI | GTAC | 1 cut(s) | 64 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 384 |
| AgsI | TTSAA | 1 cut(s) | 219 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 138, 170 |
| AluBI | AGCT | 3 cut(s) | 76, 193, 234 |
| AluI | AGCT | 3 cut(s) | 76, 193, 234 |
| Alw21I | GWGCWC | 1 cut(s) | 195 |
| AoxI | GGCC | 1 cut(s) | 402 |
| ApoI | RAATTY | 1 cut(s) | 220 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 163, 195 |
| AseI | ATTAAT | 1 cut(s) | 270 |
| AspS9I | GGNCC | 2 cut(s) | 263, 332 |
| AsuC2I | CCSGG | 2 cut(s) | 39, 133 |
| AsuII | TTCGAA | 1 cut(s) | 169 |
| AvaII | GGWCC | 2 cut(s) | 263, 332 |
| BanII | GRGCYC | 1 cut(s) | 195 |
| Bbv12I | GWGCWC | 1 cut(s) | 195 |
| BceAI | ACGGC | 1 cut(s) | 417 |
| BcnI | CCSGG | 2 cut(s) | 39, 133 |
| BfmI | CTRYAG | 1 cut(s) | 113 |
| Bme1390I | CCNGG | 2 cut(s) | 39, 133 |
| Bme18I | GGWCC | 2 cut(s) | 263, 332 |
| BmgT120I | GGNCC | 2 cut(s) | 263, 332 |
| BmrFI | CCNGG | 2 cut(s) | 39, 133 |
| BmsI | GCATC | 1 cut(s) | 32 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 177, 209 |
| Bpu14I | TTCGAA | 1 cut(s) | 169 |
| BpuEI | CTTGAG | 1 cut(s) | 143 |
| BpuMI | CCSGG | 2 cut(s) | 39, 133 |
| BsaJI | CCNNGG | 1 cut(s) | 37 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 384 |
| Bse1I | ACTGG | 1 cut(s) | 181 |
| BseDI | CCNNGG | 1 cut(s) | 37 |
| BseGI | GGATG | 1 cut(s) | 47 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 384 |
| BseMII | CTCAG | 1 cut(s) | 371 |
| BseNI | ACTGG | 1 cut(s) | 181 |
| BseYI | CCCAGC | 1 cut(s) | 285 |
| BsgI | GTGCAG | 1 cut(s) | 351 |
| BshFI | GGCC | 1 cut(s) | 404 |
| BsiHKAI | GWGCWC | 1 cut(s) | 195 |
| BsiSI | CCGG | 2 cut(s) | 39, 132 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 384 |
| BsnI | GGCC | 1 cut(s) | 404 |
| Bsp119I | TTCGAA | 1 cut(s) | 169 |
| Bsp1286I | GDGCHC | 1 cut(s) | 195 |
| BspACI | CCGC | 1 cut(s) | 188 |
| BspANI | GGCC | 1 cut(s) | 404 |
| BspCNI | CTCAG | 1 cut(s) | 370 |
| BspMAI | CTGCAG | 1 cut(s) | 117 |
| BspQI | GCTCTTC | 1 cut(s) | 178 |
| BspT104I | TTCGAA | 1 cut(s) | 169 |
| BsrBI | CCGCTC | 1 cut(s) | 188 |
| BsrI | ACTGG | 1 cut(s) | 181 |
| BssECI | CCNNGG | 1 cut(s) | 37 |
| BssNAI | GTATAC | 1 cut(s) | 241 |
| Bst1107I | GTATAC | 1 cut(s) | 241 |
| Bst4CI | ACNGT | 2 cut(s) | 127, 166 |
| Bst6I | CTCTTC | 1 cut(s) | 178 |
| BstBI | TTCGAA | 1 cut(s) | 169 |
| BstDEI | CTNAG | 1 cut(s) | 357 |
| BstF5I | GGATG | 1 cut(s) | 47 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 42 |
| BstSCI | CCNGG | 2 cut(s) | 37, 131 |
| BstSFI | CTRYAG | 1 cut(s) | 113 |
| BstZ17I | GTATAC | 1 cut(s) | 241 |
| BsuRI | GGCC | 1 cut(s) | 404 |
| BtsCI | GGATG | 1 cut(s) | 47 |
| BtsIMutI | CAGTG | 2 cut(s) | 132, 260 |
| Cfr13I | GGNCC | 2 cut(s) | 263, 332 |
| Csp6I | GTAC | 1 cut(s) | 63 |
| CviAII | CATG | 1 cut(s) | 106 |
| CviJI | RGCY | 7 cut(s) | 76, 110, 193, 234, 289, 351, 404 |
| CviKI_1 | RGCY | 7 cut(s) | 76, 110, 193, 234, 289, 351, 404 |
| CviQI | GTAC | 1 cut(s) | 63 |
| DdeI | CTNAG | 1 cut(s) | 357 |
| Eam1104I | CTCTTC | 1 cut(s) | 178 |
| EarI | CTCTTC | 1 cut(s) | 178 |
| Ecl136II | GAGCTC | 1 cut(s) | 193 |
| Eco24I | GRGCYC | 1 cut(s) | 195 |
| Eco47I | GGWCC | 2 cut(s) | 263, 332 |
| Eco53kI | GAGCTC | 1 cut(s) | 193 |
| Eco57I | CTGAAG | 1 cut(s) | 53 |
| EcoICRI | GAGCTC | 1 cut(s) | 193 |
| EcoT38I | GRGCYC | 1 cut(s) | 195 |
| FaeI | CATG | 1 cut(s) | 109 |
| FaiI | YATR | 8 cut(s) | 27, 29, 107, 237, 241, 279, 324, 348 |
| FatI | CATG | 1 cut(s) | 105 |
| FauNDI | CATATG | 1 cut(s) | 27 |
| FblI | GTMKAC | 1 cut(s) | 240 |
| FokI | GGATG | 1 cut(s) | 54 |
| FriOI | GRGCYC | 1 cut(s) | 195 |
| GsaI | CCCAGC | 1 cut(s) | 289 |
| HaeIII | GGCC | 1 cut(s) | 404 |
| HapII | CCGG | 2 cut(s) | 39, 132 |
| Hin1II | CATG | 1 cut(s) | 109 |
| HinfI | GANTC | 1 cut(s) | 250 |
| HpaII | CCGG | 2 cut(s) | 39, 132 |
| Hpy166II | GTNNAC | 3 cut(s) | 65, 241, 382 |
| Hpy188I | TCNGA | 5 cut(s) | 72, 226, 249, 267, 360 |
| Hpy188III | TCNNGA | 1 cut(s) | 160 |
| Hpy8I | GTNNAC | 3 cut(s) | 65, 241, 382 |
| Hpy99I | CGWCG | 2 cut(s) | 10, 403 |
| HpyAV | CCTTC | 3 cut(s) | 112, 300, 345 |
| HpyCH4III | ACNGT | 2 cut(s) | 127, 166 |
| HpyCH4IV | ACGT | 1 cut(s) | 93 |
| HpyCH4V | TGCA | 3 cut(s) | 25, 115, 368 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 42 |
| HpyF3I | CTNAG | 1 cut(s) | 357 |
| HpySE526I | ACGT | 1 cut(s) | 93 |
| Hsp92II | CATG | 1 cut(s) | 109 |
| LguI | GCTCTTC | 1 cut(s) | 178 |
| LmnI | GCTCC | 2 cut(s) | 190, 286 |
| LpnPI | CCDG | 6 cut(s) | 52, 145, 162, 181, 299, 378 |
| LweI | GCATC | 1 cut(s) | 32 |
| MaeII | ACGT | 1 cut(s) | 93 |
| MaeIII | GTNAC | 3 cut(s) | 121, 127, 410 |
| MbiI | CCGCTC | 1 cut(s) | 188 |
| MboII | GAAGA | 2 cut(s) | 195, 330 |
| MhlI | GDGCHC | 1 cut(s) | 195 |
| MluCI | AATT | 3 cut(s) | 200, 214, 220 |
| MlyI | GAGTC | 1 cut(s) | 259 |
| MmeI | TCCRAC | 1 cut(s) | 249 |
| MnlI | CCTC | 2 cut(s) | 304, 385 |
| MseI | TTAA | 2 cut(s) | 210, 270 |
| MslI | CAYNNNNRTG | 1 cut(s) | 321 |
| MspI | CCGG | 2 cut(s) | 39, 132 |
| MspR9I | CCNGG | 2 cut(s) | 39, 133 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 42 |
| NciI | CCSGG | 2 cut(s) | 39, 133 |
| NdeI | CATATG | 1 cut(s) | 27 |
| NlaIII | CATG | 1 cut(s) | 109 |
| NmuCI | GTSAC | 3 cut(s) | 121, 127, 410 |
| NspV | TTCGAA | 1 cut(s) | 169 |
| PciSI | GCTCTTC | 1 cut(s) | 178 |
| PleI | GAGTC | 1 cut(s) | 258 |
| PpsI | GAGTC | 1 cut(s) | 258 |
| PshBI | ATTAAT | 1 cut(s) | 270 |
| Psp124BI | GAGCTC | 1 cut(s) | 195 |
| Psp1406I | AACGTT | 1 cut(s) | 93 |
| PspFI | CCCAGC | 1 cut(s) | 285 |
| PspPI | GGNCC | 2 cut(s) | 263, 332 |
| PstI | CTGCAG | 1 cut(s) | 117 |
| RsaI | GTAC | 1 cut(s) | 64 |
| RsaNI | GTAC | 1 cut(s) | 63 |
| RseI | CAYNNNNRTG | 1 cut(s) | 321 |
| SacI | GAGCTC | 1 cut(s) | 195 |
| SapI | GCTCTTC | 1 cut(s) | 178 |
| SaqAI | TTAA | 2 cut(s) | 210, 270 |
| Sau96I | GGNCC | 2 cut(s) | 263, 332 |
| SchI | GAGTC | 1 cut(s) | 259 |
| ScrFI | CCNGG | 2 cut(s) | 39, 133 |
| SduI | GDGCHC | 1 cut(s) | 195 |
| SetI | ASST | 8 cut(s) | 57, 78, 85, 96, 123, 195, 236, 397 |
| SfaNI | GCATC | 1 cut(s) | 32 |
| SfcI | CTRYAG | 1 cut(s) | 113 |
| SfuI | TTCGAA | 1 cut(s) | 169 |
| SinI | GGWCC | 2 cut(s) | 263, 332 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 321 |
| SmlI | CTYRAG | 1 cut(s) | 158 |
| SmoI | CTYRAG | 1 cut(s) | 158 |
| Sse9I | AATT | 3 cut(s) | 200, 214, 220 |
| SsiI | CCGC | 1 cut(s) | 188 |
| SstI | GAGCTC | 1 cut(s) | 195 |
| StyD4I | CCNGG | 2 cut(s) | 37, 131 |
| TaaI | ACNGT | 2 cut(s) | 127, 166 |
| TaiI | ACGT | 1 cut(s) | 96 |
| TaqI | TCGA | 2 cut(s) | 169, 181 |
| TasI | AATT | 3 cut(s) | 200, 214, 220 |
| TatI | WGTACW | 1 cut(s) | 62 |
| Tru1I | TTAA | 2 cut(s) | 210, 270 |
| Tru9I | TTAA | 2 cut(s) | 210, 270 |
| TscAI | CASTG | 2 cut(s) | 132, 260 |
| TseFI | GTSAC | 3 cut(s) | 121, 127, 410 |
| Tsp45I | GTSAC | 3 cut(s) | 121, 127, 410 |
| TspGWI | ACGGA | 2 cut(s) | 333, 367 |
| TspRI | CASTG | 2 cut(s) | 132, 260 |
| VpaK11BI | GGWCC | 2 cut(s) | 263, 332 |
| VspI | ATTAAT | 1 cut(s) | 270 |
| XapI | RAATTY | 1 cut(s) | 220 |
| XmiI | GTMKAC | 1 cut(s) | 240 |