Reverse transcriptase (RNA-dependent DNA polymerase)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 678 |
| AarI | CACCTGC | 1 cut(s) | 1612 |
| AatII | GACGTC | 1 cut(s) | 113 |
| Acc36I | ACCTGC | 1 cut(s) | 1612 |
| AccB1I | GGYRCC | 2 cut(s) | 1240, 1616 |
| AccBSI | CCGCTC | 1 cut(s) | 1663 |
| AccII | CGCG | 1 cut(s) | 1119 |
| AciI | CCGC | 3 cut(s) | 934, 1087, 1663 |
| AclWI | GGATC | 4 cut(s) | 28, 515, 1122, 1638 |
| AcoI | YGGCCR | 1 cut(s) | 49 |
| AcsI | RAATTY | 4 cut(s) | 176, 260, 976, 1741 |
| AcuI | CTGAAG | 2 cut(s) | 32, 1500 |
| AcyI | GRCGYC | 1 cut(s) | 110 |
| AdeI | CACNNNGTG | 1 cut(s) | 1469 |
| AfaI | GTAC | 2 cut(s) | 197, 429 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 16, 548, 1043, 1362 |
| AjnI | CCWGG | 2 cut(s) | 226, 1361 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 975, 1007, 1406, 1438 |
| Alw26I | GTCTC | 4 cut(s) | 101, 658, 1052, 1182 |
| AlwI | GGATC | 4 cut(s) | 28, 515, 1122, 1638 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1376, 1567 |
| AoxI | GGCC | 6 cut(s) | 49, 539, 996, 1159, 1353, 1847 |
| ApaI | GGGCCC | 1 cut(s) | 1000 |
| ApeKI | GCWGC | 6 cut(s) | 320, 809, 1013, 1283, 1442, 1812 |
| ApoI | RAATTY | 4 cut(s) | 176, 260, 976, 1741 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 384, 468, 1500, 1745 |
| AspLEI | GCGC | 2 cut(s) | 1186, 1585 |
| AspS9I | GGNCC | 4 cut(s) | 996, 997, 1354, 1847 |
| AsuHPI | GGTGA | 1 cut(s) | 1732 |
| AsuNHI | GCTAGC | 1 cut(s) | 956 |
| BaeGI | GKGCMC | 1 cut(s) | 1000 |
| BalI | TGGCCA | 1 cut(s) | 51 |
| BanI | GGYRCC | 2 cut(s) | 1240, 1616 |
| BanII | GRGCYC | 2 cut(s) | 572, 1000 |
| BbsI | GAAGAC | 3 cut(s) | 168, 351, 1730 |
| BbvCI | CCTCAGC | 1 cut(s) | 1233 |
| BbvI | GCAGC | 6 cut(s) | 332, 796, 1025, 1270, 1454, 1799 |
| BciT130I | CCWGG | 2 cut(s) | 228, 1363 |
| BclI | TGATCA | 1 cut(s) | 889 |
| BcoDI | GTCTC | 4 cut(s) | 101, 658, 1052, 1182 |
| BfaI | CTAG | 7 cut(s) | 183, 513, 719, 786, 957, 1280, 1809 |
| BfmI | CTRYAG | 1 cut(s) | 1393 |
| BfuAI | ACCTGC | 1 cut(s) | 1612 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 576 |
| BglII | AGATCT | 1 cut(s) | 1024 |
| BisI | GCNGC | 6 cut(s) | 321, 810, 1014, 1284, 1443, 1813 |
| BlsI | GCNGC | 6 cut(s) | 322, 811, 1015, 1285, 1444, 1814 |
| BmcAI | AGTACT | 1 cut(s) | 429 |
| Bme1390I | CCNGG | 2 cut(s) | 228, 1363 |
| BmgT120I | GGNCC | 4 cut(s) | 996, 997, 1354, 1847 |
| BmiI | GGNNCC | 5 cut(s) | 235, 997, 998, 1242, 1618 |
| BmrFI | CCNGG | 2 cut(s) | 228, 1363 |
| BmrI | ACTGGG | 1 cut(s) | 994 |
| BmsI | GCATC | 5 cut(s) | 476, 498, 769, 827, 1777 |
| BmtI | GCTAGC | 1 cut(s) | 960 |
| BmuI | ACTGGG | 1 cut(s) | 994 |
| BpiI | GAAGAC | 3 cut(s) | 168, 351, 1730 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 638, 670 |
| Bpu10I | CCTNAGC | 2 cut(s) | 923, 1233 |
| BpuEI | CTTGAG | 7 cut(s) | 884, 1334, 1571, 1593, 1697, 1711, 1757 |
| BsaBI | GATNNNNATC | 3 cut(s) | 25, 846, 1224 |
| BsaHI | GRCGYC | 1 cut(s) | 110 |
| BsaI | GGTCTC | 2 cut(s) | 1052, 1182 |
| BsaJI | CCNNGG | 2 cut(s) | 30, 1361 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 16, 548, 1043, 1362 |
| Bse118I | RCCGGY | 1 cut(s) | 1523 |
| Bse1I | ACTGG | 5 cut(s) | 76, 623, 1000, 1162, 1632 |
| Bse3DI | GCAATG | 3 cut(s) | 134, 510, 1822 |
| Bse8I | GATNNNNATC | 3 cut(s) | 25, 846, 1224 |
| BseBI | CCWGG | 2 cut(s) | 228, 1363 |
| BseDI | CCNNGG | 2 cut(s) | 30, 1361 |
| BseGI | GGATG | 4 cut(s) | 196, 619, 1225, 1357 |
| BseJI | GATNNNNATC | 3 cut(s) | 25, 846, 1224 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 16, 548, 1043, 1362 |
| BseMI | GCAATG | 3 cut(s) | 134, 510, 1822 |
| BseMII | CTCAG | 5 cut(s) | 315, 1224, 1368, 1559, 1662 |
| BseNI | ACTGG | 5 cut(s) | 76, 623, 1000, 1162, 1632 |
| BseRI | GAGGAG | 2 cut(s) | 119, 881 |
| BseSI | GKGCMC | 1 cut(s) | 1000 |
| BseXI | GCAGC | 6 cut(s) | 332, 796, 1025, 1270, 1454, 1799 |
| BseYI | CCCAGC | 2 cut(s) | 16, 814 |
| BsgI | GTGCAG | 3 cut(s) | 200, 339, 579 |
| Bsh1236I | CGCG | 1 cut(s) | 1119 |
| BshFI | GGCC | 6 cut(s) | 51, 541, 998, 1161, 1355, 1849 |
| BshNI | GGYRCC | 2 cut(s) | 1240, 1616 |
| BsiSI | CCGG | 1 cut(s) | 1524 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 16, 548, 1043, 1362 |
| BsmAI | GTCTC | 4 cut(s) | 101, 658, 1052, 1182 |
| BsmBI | CGTCTC | 1 cut(s) | 101 |
| BsmI | GAATGC | 2 cut(s) | 584, 1691 |
| BsnI | GGCC | 6 cut(s) | 51, 541, 998, 1161, 1355, 1849 |
| Bso31I | GGTCTC | 2 cut(s) | 1052, 1182 |
| Bsp120I | GGGCCC | 1 cut(s) | 996 |
| Bsp1286I | GDGCHC | 2 cut(s) | 572, 1000 |
| Bsp143I | GATC | 8 cut(s) | 20, 520, 847, 889, 1024, 1096, 1114, 1630 |
| Bsp68I | TCGCGA | 1 cut(s) | 1119 |
| BspACI | CCGC | 3 cut(s) | 934, 1087, 1663 |
| BspANI | GGCC | 6 cut(s) | 51, 541, 998, 1161, 1355, 1849 |
| BspCNI | CTCAG | 5 cut(s) | 316, 1225, 1369, 1560, 1663 |
| BspFNI | CGCG | 1 cut(s) | 1119 |
| BspHI | TCATGA | 1 cut(s) | 1401 |
| BspLI | GGNNCC | 5 cut(s) | 235, 997, 998, 1242, 1618 |
| BspMAI | CTGCAG | 1 cut(s) | 1397 |
| BspMI | ACCTGC | 1 cut(s) | 1612 |
| BspOI | GCTAGC | 1 cut(s) | 960 |
| BspPI | GGATC | 4 cut(s) | 28, 515, 1122, 1638 |
| BspQI | GCTCTTC | 2 cut(s) | 459, 560 |
| BspT107I | GGYRCC | 2 cut(s) | 1240, 1616 |
| BspTNI | GGTCTC | 2 cut(s) | 1052, 1182 |
| BsrBI | CCGCTC | 1 cut(s) | 1663 |
| BsrDI | GCAATG | 3 cut(s) | 134, 510, 1822 |
| BsrFI | RCCGGY | 1 cut(s) | 1523 |
| BsrI | ACTGG | 5 cut(s) | 76, 623, 1000, 1162, 1632 |
| BssAI | RCCGGY | 1 cut(s) | 1523 |
| BssECI | CCNNGG | 2 cut(s) | 30, 1361 |
| BssMI | GATC | 8 cut(s) | 20, 520, 847, 889, 1024, 1096, 1114, 1630 |
| BssNI | GRCGYC | 1 cut(s) | 110 |
| Bst2UI | CCWGG | 2 cut(s) | 228, 1363 |
| Bst4CI | ACNGT | 5 cut(s) | 806, 826, 1054, 1145, 1331 |
| Bst6I | CTCTTC | 2 cut(s) | 459, 560 |
| BstACI | GRCGYC | 1 cut(s) | 110 |
| BstC8I | GCNNGC | 8 cut(s) | 7, 375, 779, 954, 958, 1397, 1432, 1615 |
| BstDEI | CTNAG | 7 cut(s) | 324, 923, 1233, 1377, 1568, 1671, 1791 |
| BstEII | GGTNACC | 1 cut(s) | 1458 |
| BstF5I | GGATG | 4 cut(s) | 196, 619, 1225, 1357 |
| BstFNI | CGCG | 1 cut(s) | 1119 |
| BstHHI | GCGC | 2 cut(s) | 1186, 1585 |
| BstKTI | GATC | 8 cut(s) | 23, 523, 850, 892, 1027, 1099, 1117, 1633 |
| BstMAI | GTCTC | 4 cut(s) | 101, 658, 1052, 1182 |
| BstMBI | GATC | 8 cut(s) | 20, 520, 847, 889, 1024, 1096, 1114, 1630 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 509, 576, 815, 1238 |
| BstNI | CCWGG | 2 cut(s) | 228, 1363 |
| BstNSI | RCATGY | 2 cut(s) | 956, 1442 |
| BstPI | GGTNACC | 1 cut(s) | 1458 |
| BstSCI | CCNGG | 2 cut(s) | 226, 1361 |
| BstSFI | CTRYAG | 1 cut(s) | 1393 |
| BstSLI | GKGCMC | 1 cut(s) | 1000 |
| BstUI | CGCG | 1 cut(s) | 1119 |
| BstV1I | GCAGC | 6 cut(s) | 332, 796, 1025, 1270, 1454, 1799 |
| BstV2I | GAAGAC | 3 cut(s) | 168, 351, 1730 |
| BstX2I | RGATCY | 1 cut(s) | 1024 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1627 |
| BstYI | RGATCY | 1 cut(s) | 1024 |
| BsuRI | GGCC | 6 cut(s) | 51, 541, 998, 1161, 1355, 1849 |
| BtsCI | GGATG | 4 cut(s) | 196, 619, 1225, 1357 |
| BtsI | GCAGTG | 1 cut(s) | 567 |
| BtsIMutI | CAGTG | 2 cut(s) | 567, 1059 |
| BtuMI | TCGCGA | 1 cut(s) | 1119 |
| BveI | ACCTGC | 1 cut(s) | 1612 |
| Cac8I | GCNNGC | 8 cut(s) | 7, 375, 779, 954, 958, 1397, 1432, 1615 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1376, 1567 |
| CciI | TCATGA | 1 cut(s) | 1401 |
| CfoI | GCGC | 2 cut(s) | 1186, 1585 |
| Cfr10I | RCCGGY | 1 cut(s) | 1523 |
| Cfr13I | GGNCC | 4 cut(s) | 996, 997, 1354, 1847 |
| Csp6I | GTAC | 2 cut(s) | 196, 428 |
| CviQI | GTAC | 2 cut(s) | 196, 428 |
| DdeI | CTNAG | 7 cut(s) | 324, 923, 1233, 1377, 1568, 1671, 1791 |
| DpnI | GATC | 8 cut(s) | 22, 522, 849, 891, 1026, 1098, 1116, 1632 |
| DpnII | GATC | 8 cut(s) | 20, 520, 847, 889, 1024, 1096, 1114, 1630 |
| DraIII | CACNNNGTG | 1 cut(s) | 1469 |
| EaeI | YGGCCR | 1 cut(s) | 49 |
| Eam1104I | CTCTTC | 2 cut(s) | 459, 560 |
| EarI | CTCTTC | 2 cut(s) | 459, 560 |
| Eco24I | GRGCYC | 2 cut(s) | 572, 1000 |
| Eco31I | GGTCTC | 2 cut(s) | 1052, 1182 |
| Eco57I | CTGAAG | 2 cut(s) | 32, 1500 |
| Eco91I | GGTNACC | 1 cut(s) | 1458 |
| EcoO109I | RGGNCCY | 1 cut(s) | 996 |
| EcoO65I | GGTNACC | 1 cut(s) | 1458 |
| EcoRI | GAATTC | 1 cut(s) | 1741 |
| EcoRII | CCWGG | 2 cut(s) | 226, 1361 |
| EcoT22I | ATGCAT | 1 cut(s) | 491 |
| EcoT38I | GRGCYC | 2 cut(s) | 572, 1000 |
| Esp3I | CGTCTC | 1 cut(s) | 101 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1002, 1034, 1673, 1705 |
| FauI | CCCGC | 1 cut(s) | 1656 |
| FbaI | TGATCA | 1 cut(s) | 889 |
| Fnu4HI | GCNGC | 6 cut(s) | 321, 810, 1014, 1284, 1443, 1813 |
| FokI | GGATG | 4 cut(s) | 203, 606, 1232, 1344 |
| FriOI | GRGCYC | 2 cut(s) | 572, 1000 |
| Fsp4HI | GCNGC | 6 cut(s) | 321, 810, 1014, 1284, 1443, 1813 |
| FspBI | CTAG | 7 cut(s) | 183, 513, 719, 786, 957, 1280, 1809 |
| GlaI | GCGC | 2 cut(s) | 1185, 1584 |
| GluI | GCNGC | 6 cut(s) | 321, 810, 1014, 1284, 1443, 1813 |
| GsaI | CCCAGC | 2 cut(s) | 20, 818 |
| HaeIII | GGCC | 6 cut(s) | 51, 541, 998, 1161, 1355, 1849 |
| HapII | CCGG | 1 cut(s) | 1524 |
| HhaI | GCGC | 2 cut(s) | 1186, 1585 |
| Hin1I | GRCGYC | 1 cut(s) | 110 |
| Hin6I | GCGC | 2 cut(s) | 1184, 1583 |
| HinP1I | GCGC | 2 cut(s) | 1184, 1583 |
| HincII | GTYRAC | 1 cut(s) | 1252 |
| HindII | GTYRAC | 1 cut(s) | 1252 |
| HpaI | GTTAAC | 1 cut(s) | 1252 |
| HpaII | CCGG | 1 cut(s) | 1524 |
| HphI | GGTGA | 1 cut(s) | 1732 |
| Hpy166II | GTNNAC | 1 cut(s) | 1252 |
| Hpy188I | TCNGA | 9 cut(s) | 31, 525, 841, 894, 1378, 1543, 1569, 1672, 1825 |
| Hpy8I | GTNNAC | 1 cut(s) | 1252 |
| HpyCH4III | ACNGT | 5 cut(s) | 806, 826, 1054, 1145, 1331 |
| HpyCH4IV | ACGT | 1 cut(s) | 110 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 509, 576, 815, 1238 |
| HpyF3I | CTNAG | 7 cut(s) | 324, 923, 1233, 1377, 1568, 1671, 1791 |
| HpySE526I | ACGT | 1 cut(s) | 110 |
| Hsp92I | GRCGYC | 1 cut(s) | 110 |
| HspAI | GCGC | 2 cut(s) | 1184, 1583 |
| Ksp22I | TGATCA | 1 cut(s) | 889 |
| KspAI | GTTAAC | 1 cut(s) | 1252 |
| Kzo9I | GATC | 8 cut(s) | 20, 520, 847, 889, 1024, 1096, 1114, 1630 |
| LguI | GCTCTTC | 2 cut(s) | 459, 560 |
| LmnI | GCTCC | 2 cut(s) | 233, 1384 |
| Lsp1109I | GCAGC | 6 cut(s) | 332, 796, 1025, 1270, 1454, 1799 |
| LweI | GCATC | 5 cut(s) | 476, 498, 769, 827, 1777 |
| MaeI | CTAG | 7 cut(s) | 183, 513, 719, 786, 957, 1280, 1809 |
| MaeII | ACGT | 1 cut(s) | 110 |
| MaeIII | GTNAC | 5 cut(s) | 901, 1046, 1260, 1275, 1458 |
| MalI | GATC | 8 cut(s) | 22, 522, 849, 891, 1026, 1098, 1116, 1632 |
| MbiI | CCGCTC | 1 cut(s) | 1663 |
| MboI | GATC | 8 cut(s) | 20, 520, 847, 889, 1024, 1096, 1114, 1630 |
| MfeI | CAATTG | 2 cut(s) | 406, 1125 |
| MflI | RGATCY | 1 cut(s) | 1024 |
| MhlI | GDGCHC | 2 cut(s) | 572, 1000 |
| MlsI | TGGCCA | 1 cut(s) | 51 |
| MluNI | TGGCCA | 1 cut(s) | 51 |
| MlyI | GAGTC | 3 cut(s) | 410, 1183, 1367 |
| MmeI | TCCRAC | 2 cut(s) | 984, 1718 |
| Mox20I | TGGCCA | 1 cut(s) | 51 |
| Mph1103I | ATGCAT | 1 cut(s) | 491 |
| MroXI | GAANNNNTTC | 4 cut(s) | 384, 468, 1500, 1745 |
| MscI | TGGCCA | 1 cut(s) | 51 |
| MseI | TTAA | 4 cut(s) | 423, 627, 1251, 1889 |
| MslI | CAYNNNNRTG | 2 cut(s) | 45, 1109 |
| Msp20I | TGGCCA | 1 cut(s) | 51 |
| MspA1I | CMGCKG | 2 cut(s) | 323, 1087 |
| MspI | CCGG | 1 cut(s) | 1524 |
| MspR9I | CCNGG | 2 cut(s) | 228, 1363 |
| MunI | CAATTG | 2 cut(s) | 406, 1125 |
| Mva1269I | GAATGC | 2 cut(s) | 584, 1691 |
| MvaI | CCWGG | 2 cut(s) | 228, 1363 |
| MvnI | CGCG | 1 cut(s) | 1119 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 509, 576, 815, 1238 |
| NdeII | GATC | 8 cut(s) | 20, 520, 847, 889, 1024, 1096, 1114, 1630 |
| NheI | GCTAGC | 1 cut(s) | 956 |
| NlaIV | GGNNCC | 5 cut(s) | 235, 997, 998, 1242, 1618 |
| NmuCI | GTSAC | 1 cut(s) | 1275 |
| NruI | TCGCGA | 1 cut(s) | 1119 |
| NsiI | ATGCAT | 1 cut(s) | 491 |
| NspI | RCATGY | 2 cut(s) | 956, 1442 |
| PaeI | GCATGC | 1 cut(s) | 956 |
| PagI | TCATGA | 1 cut(s) | 1401 |
| PaqCI | CACCTGC | 1 cut(s) | 1612 |
| PciSI | GCTCTTC | 2 cut(s) | 459, 560 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1630 |
| PctI | GAATGC | 2 cut(s) | 584, 1691 |
| PdmI | GAANNNNTTC | 4 cut(s) | 384, 468, 1500, 1745 |
| PfeI | GAWTC | 7 cut(s) | 688, 701, 715, 856, 1090, 1121, 1564 |
| PkrI | GCNGC | 6 cut(s) | 322, 811, 1015, 1285, 1444, 1814 |
| PleI | GAGTC | 3 cut(s) | 410, 1183, 1367 |
| PpsI | GAGTC | 3 cut(s) | 410, 1183, 1367 |
| PsiI | TTATAA | 1 cut(s) | 678 |
| Psp6I | CCWGG | 2 cut(s) | 226, 1361 |
| PspEI | GGTNACC | 1 cut(s) | 1458 |
| PspFI | CCCAGC | 2 cut(s) | 16, 814 |
| PspGI | CCWGG | 2 cut(s) | 226, 1361 |
| PspN4I | GGNNCC | 5 cut(s) | 235, 997, 998, 1242, 1618 |
| PspOMI | GGGCCC | 1 cut(s) | 996 |
| PspPI | GGNCC | 4 cut(s) | 996, 997, 1354, 1847 |
| PstI | CTGCAG | 1 cut(s) | 1397 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1376, 1567 |
| PsuI | RGATCY | 1 cut(s) | 1024 |
| PvuII | CAGCTG | 1 cut(s) | 323 |
| RruI | TCGCGA | 1 cut(s) | 1119 |
| RsaI | GTAC | 2 cut(s) | 197, 429 |
| RsaNI | GTAC | 2 cut(s) | 196, 428 |
| RseI | CAYNNNNRTG | 2 cut(s) | 45, 1109 |
| SapI | GCTCTTC | 2 cut(s) | 459, 560 |
| SaqAI | TTAA | 4 cut(s) | 423, 627, 1251, 1889 |
| SatI | GCNGC | 6 cut(s) | 321, 810, 1014, 1284, 1443, 1813 |
| Sau3AI | GATC | 8 cut(s) | 20, 520, 847, 889, 1024, 1096, 1114, 1630 |
| Sau96I | GGNCC | 4 cut(s) | 996, 997, 1354, 1847 |
| ScaI | AGTACT | 1 cut(s) | 429 |
| SchI | GAGTC | 3 cut(s) | 410, 1183, 1367 |
| ScrFI | CCNGG | 2 cut(s) | 228, 1363 |
| SduI | GDGCHC | 2 cut(s) | 572, 1000 |
| SfaNI | GCATC | 5 cut(s) | 476, 498, 769, 827, 1777 |
| SfcI | CTRYAG | 1 cut(s) | 1393 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 45, 1109 |
| SmlI | CTYRAG | 7 cut(s) | 863, 1349, 1550, 1608, 1676, 1690, 1772 |
| SmoI | CTYRAG | 7 cut(s) | 863, 1349, 1550, 1608, 1676, 1690, 1772 |
| SphI | GCATGC | 1 cut(s) | 956 |
| SsiI | CCGC | 3 cut(s) | 934, 1087, 1663 |
| SspMI | CTAG | 7 cut(s) | 183, 513, 719, 786, 957, 1280, 1809 |
| StyD4I | CCNGG | 2 cut(s) | 226, 1361 |
| TaaI | ACNGT | 5 cut(s) | 806, 826, 1054, 1145, 1331 |
| TaiI | ACGT | 1 cut(s) | 113 |
| TaqI | TCGA | 5 cut(s) | 23, 970, 1095, 1192, 1338 |
| TatI | WGTACW | 2 cut(s) | 195, 427 |
| TfiI | GAWTC | 7 cut(s) | 688, 701, 715, 856, 1090, 1121, 1564 |
| Tru1I | TTAA | 4 cut(s) | 423, 627, 1251, 1889 |
| Tru9I | TTAA | 4 cut(s) | 423, 627, 1251, 1889 |
| TscAI | CASTG | 2 cut(s) | 567, 1059 |
| TseFI | GTSAC | 1 cut(s) | 1275 |
| TseI | GCWGC | 6 cut(s) | 320, 809, 1013, 1283, 1442, 1812 |
| Tsp45I | GTSAC | 1 cut(s) | 1275 |
| TspGWI | ACGGA | 2 cut(s) | 1457, 1525 |
| TspRI | CASTG | 2 cut(s) | 567, 1059 |
| XapI | RAATTY | 4 cut(s) | 176, 260, 976, 1741 |
| XbaI | TCTAGA | 1 cut(s) | 718 |
| XceI | RCATGY | 2 cut(s) | 956, 1442 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1169 |
| XmnI | GAANNNNTTC | 4 cut(s) | 384, 468, 1500, 1745 |
| XspI | CTAG | 7 cut(s) | 183, 513, 719, 786, 957, 1280, 1809 |
| ZraI | GACGTC | 1 cut(s) | 111 |
| ZrmI | AGTACT | 1 cut(s) | 429 |
| Zsp2I | ATGCAT | 1 cut(s) | 491 |