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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 274 |
| AciI | CCGC | 2 cut(s) | 215, 218 |
| AclWI | GGATC | 3 cut(s) | 50, 901, 914 |
| AcoI | YGGCCR | 2 cut(s) | 362, 477 |
| AcsI | RAATTY | 1 cut(s) | 303 |
| AfaI | GTAC | 2 cut(s) | 652, 899 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 324 |
| AgsI | TTSAA | 7 cut(s) | 38, 201, 551, 609, 743, 750, 822 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 730, 762 |
| AluBI | AGCT | 2 cut(s) | 578, 716 |
| AluI | AGCT | 2 cut(s) | 578, 716 |
| Alw26I | GTCTC | 4 cut(s) | 64, 173, 549, 586 |
| AlwI | GGATC | 3 cut(s) | 50, 901, 914 |
| Ama87I | CYCGRG | 1 cut(s) | 772 |
| AoxI | GGCC | 4 cut(s) | 143, 362, 477, 813 |
| ApeKI | GCWGC | 1 cut(s) | 656 |
| ApoI | RAATTY | 1 cut(s) | 303 |
| AspS9I | GGNCC | 2 cut(s) | 143, 168 |
| AsuC2I | CCSGG | 1 cut(s) | 833 |
| AsuHPI | GGTGA | 2 cut(s) | 413, 424 |
| AvaI | CYCGRG | 1 cut(s) | 772 |
| AvaII | GGWCC | 1 cut(s) | 168 |
| AxyI | CCTNAGG | 1 cut(s) | 664 |
| BalI | TGGCCA | 1 cut(s) | 479 |
| BamHI | GGATCC | 1 cut(s) | 906 |
| BanII | GRGCYC | 1 cut(s) | 318 |
| BbsI | GAAGAC | 2 cut(s) | 29, 62 |
| BbvI | GCAGC | 1 cut(s) | 643 |
| BccI | CCATC | 2 cut(s) | 4, 283 |
| BcnI | CCSGG | 1 cut(s) | 833 |
| BcoDI | GTCTC | 4 cut(s) | 64, 173, 549, 586 |
| BfaI | CTAG | 3 cut(s) | 390, 695, 783 |
| BfmI | CTRYAG | 1 cut(s) | 228 |
| BfuAI | ACCTGC | 1 cut(s) | 274 |
| BisI | GCNGC | 2 cut(s) | 216, 657 |
| BlsI | GCNGC | 2 cut(s) | 217, 658 |
| BmcAI | AGTACT | 1 cut(s) | 652 |
| Bme1390I | CCNGG | 1 cut(s) | 833 |
| Bme18I | GGWCC | 1 cut(s) | 168 |
| BmeT110I | CYCGRG | 1 cut(s) | 772 |
| BmgT120I | GGNCC | 2 cut(s) | 143, 168 |
| BmiI | GGNNCC | 1 cut(s) | 908 |
| BmrFI | CCNGG | 1 cut(s) | 833 |
| BmsI | GCATC | 2 cut(s) | 131, 577 |
| BpiI | GAAGAC | 2 cut(s) | 29, 62 |
| BpmI | CTGGAG | 1 cut(s) | 714 |
| BpuMI | CCSGG | 1 cut(s) | 833 |
| BsaI | GGTCTC | 1 cut(s) | 549 |
| BsaJI | CCNNGG | 1 cut(s) | 831 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 643, 673 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 324 |
| Bse118I | RCCGGY | 1 cut(s) | 360 |
| Bse1I | ACTGG | 2 cut(s) | 56, 731 |
| Bse21I | CCTNAGG | 1 cut(s) | 664 |
| BseDI | CCNNGG | 1 cut(s) | 831 |
| BseGI | GGATG | 2 cut(s) | 294, 568 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 324 |
| BseMII | CTCAG | 2 cut(s) | 549, 602 |
| BseNI | ACTGG | 2 cut(s) | 56, 731 |
| BseXI | GCAGC | 1 cut(s) | 643 |
| BshFI | GGCC | 4 cut(s) | 145, 364, 479, 815 |
| BsiHKCI | CYCGRG | 1 cut(s) | 772 |
| BsiSI | CCGG | 2 cut(s) | 361, 833 |
| BslFI | GGGAC | 2 cut(s) | 552, 614 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 324 |
| BsmAI | GTCTC | 4 cut(s) | 64, 173, 549, 586 |
| BsmBI | CGTCTC | 1 cut(s) | 64 |
| BsmFI | GGGAC | 2 cut(s) | 552, 614 |
| BsmI | GAATGC | 1 cut(s) | 96 |
| BsnI | GGCC | 4 cut(s) | 145, 364, 479, 815 |
| Bso31I | GGTCTC | 1 cut(s) | 549 |
| BsoBI | CYCGRG | 1 cut(s) | 772 |
| Bsp1286I | GDGCHC | 1 cut(s) | 318 |
| Bsp1407I | TGTACA | 1 cut(s) | 897 |
| Bsp143I | GATC | 7 cut(s) | 42, 150, 259, 491, 554, 584, 906 |
| BspACI | CCGC | 2 cut(s) | 215, 218 |
| BspANI | GGCC | 4 cut(s) | 145, 364, 479, 815 |
| BspCNI | CTCAG | 2 cut(s) | 550, 601 |
| BspLI | GGNNCC | 1 cut(s) | 908 |
| BspMAI | CTGCAG | 1 cut(s) | 232 |
| BspMI | ACCTGC | 1 cut(s) | 274 |
| BspPI | GGATC | 3 cut(s) | 50, 901, 914 |
| BspQI | GCTCTTC | 1 cut(s) | 306 |
| BspTNI | GGTCTC | 1 cut(s) | 549 |
| BsrFI | RCCGGY | 1 cut(s) | 360 |
| BsrGI | TGTACA | 1 cut(s) | 897 |
| BsrI | ACTGG | 2 cut(s) | 56, 731 |
| BssAI | RCCGGY | 1 cut(s) | 360 |
| BssECI | CCNNGG | 1 cut(s) | 831 |
| BssMI | GATC | 7 cut(s) | 42, 150, 259, 491, 554, 584, 906 |
| Bst4CI | ACNGT | 1 cut(s) | 543 |
| Bst6I | CTCTTC | 3 cut(s) | 62, 306, 864 |
| BstAUI | TGTACA | 1 cut(s) | 897 |
| BstC8I | GCNNGC | 1 cut(s) | 714 |
| BstDEI | CTNAG | 5 cut(s) | 380, 558, 588, 664, 717 |
| BstF5I | GGATG | 2 cut(s) | 294, 568 |
| BstKTI | GATC | 7 cut(s) | 45, 153, 262, 494, 557, 587, 909 |
| BstMAI | GTCTC | 4 cut(s) | 64, 173, 549, 586 |
| BstMBI | GATC | 7 cut(s) | 42, 150, 259, 491, 554, 584, 906 |
| BstNSI | RCATGY | 2 cut(s) | 122, 476 |
| BstSCI | CCNGG | 1 cut(s) | 831 |
| BstSFI | CTRYAG | 1 cut(s) | 228 |
| BstV1I | GCAGC | 1 cut(s) | 643 |
| BstV2I | GAAGAC | 2 cut(s) | 29, 62 |
| BstX2I | RGATCY | 2 cut(s) | 42, 906 |
| BstYI | RGATCY | 2 cut(s) | 42, 906 |
| Bsu36I | CCTNAGG | 1 cut(s) | 664 |
| BsuRI | GGCC | 4 cut(s) | 145, 364, 479, 815 |
| BtsCI | GGATG | 2 cut(s) | 294, 568 |
| BveI | ACCTGC | 1 cut(s) | 274 |
| Cac8I | GCNNGC | 1 cut(s) | 714 |
| Cfr10I | RCCGGY | 1 cut(s) | 360 |
| Cfr13I | GGNCC | 2 cut(s) | 143, 168 |
| Csp6I | GTAC | 2 cut(s) | 651, 898 |
| CviAII | CATG | 6 cut(s) | 19, 119, 172, 473, 622, 635 |
| CviQI | GTAC | 2 cut(s) | 651, 898 |
| DdeI | CTNAG | 5 cut(s) | 380, 558, 588, 664, 717 |
| DpnI | GATC | 7 cut(s) | 44, 152, 261, 493, 556, 586, 908 |
| DpnII | GATC | 7 cut(s) | 42, 150, 259, 491, 554, 584, 906 |
| EaeI | YGGCCR | 2 cut(s) | 362, 477 |
| Eam1104I | CTCTTC | 3 cut(s) | 62, 306, 864 |
| EarI | CTCTTC | 3 cut(s) | 62, 306, 864 |
| Eco24I | GRGCYC | 1 cut(s) | 318 |
| Eco31I | GGTCTC | 1 cut(s) | 549 |
| Eco47I | GGWCC | 1 cut(s) | 168 |
| Eco81I | CCTNAGG | 1 cut(s) | 664 |
| Eco88I | CYCGRG | 1 cut(s) | 772 |
| EcoT22I | ATGCAT | 1 cut(s) | 124 |
| EcoT38I | GRGCYC | 1 cut(s) | 318 |
| Esp3I | CGTCTC | 1 cut(s) | 64 |
| FaeI | CATG | 6 cut(s) | 22, 122, 175, 476, 625, 638 |
| FaqI | GGGAC | 2 cut(s) | 552, 614 |
| FatI | CATG | 6 cut(s) | 18, 118, 171, 472, 621, 634 |
| FauNDI | CATATG | 1 cut(s) | 164 |
| Fnu4HI | GCNGC | 2 cut(s) | 216, 657 |
| FokI | GGATG | 2 cut(s) | 301, 555 |
| FriOI | GRGCYC | 1 cut(s) | 318 |
| Fsp4HI | GCNGC | 2 cut(s) | 216, 657 |
| FspBI | CTAG | 3 cut(s) | 390, 695, 783 |
| GluI | GCNGC | 2 cut(s) | 216, 657 |
| GsuI | CTGGAG | 1 cut(s) | 714 |
| HaeIII | GGCC | 4 cut(s) | 145, 364, 479, 815 |
| HapII | CCGG | 2 cut(s) | 361, 833 |
| Hin1II | CATG | 6 cut(s) | 22, 122, 175, 476, 625, 638 |
| HincII | GTYRAC | 2 cut(s) | 358, 887 |
| HindII | GTYRAC | 2 cut(s) | 358, 887 |
| HinfI | GANTC | 6 cut(s) | 132, 181, 233, 384, 431, 871 |
| HpaII | CCGG | 2 cut(s) | 361, 833 |
| HphI | GGTGA | 2 cut(s) | 413, 424 |
| Hpy166II | GTNNAC | 2 cut(s) | 358, 887 |
| Hpy188I | TCNGA | 9 cut(s) | 66, 115, 131, 310, 559, 591, 844, 870, 876 |
| Hpy188III | TCNNGA | 3 cut(s) | 46, 548, 582 |
| Hpy8I | GTNNAC | 2 cut(s) | 358, 887 |
| HpyAV | CCTTC | 4 cut(s) | 328, 332, 756, 920 |
| HpyCH4III | ACNGT | 1 cut(s) | 543 |
| HpyCH4IV | ACGT | 2 cut(s) | 59, 889 |
| HpyCH4V | TGCA | 7 cut(s) | 96, 122, 230, 251, 342, 489, 808 |
| HpyF3I | CTNAG | 5 cut(s) | 380, 558, 588, 664, 717 |
| HpySE526I | ACGT | 2 cut(s) | 59, 889 |
| Hsp92II | CATG | 6 cut(s) | 22, 122, 175, 476, 625, 638 |
| Kzo9I | GATC | 7 cut(s) | 42, 150, 259, 491, 554, 584, 906 |
| LguI | GCTCTTC | 1 cut(s) | 306 |
| LmnI | GCTCC | 3 cut(s) | 664, 694, 790 |
| Lsp1109I | GCAGC | 1 cut(s) | 643 |
| LweI | GCATC | 2 cut(s) | 131, 577 |
| MaeI | CTAG | 3 cut(s) | 390, 695, 783 |
| MaeII | ACGT | 2 cut(s) | 59, 889 |
| MalI | GATC | 7 cut(s) | 44, 152, 261, 493, 556, 586, 908 |
| MboI | GATC | 7 cut(s) | 42, 150, 259, 491, 554, 584, 906 |
| MboII | GAAGA | 7 cut(s) | 17, 34, 67, 79, 323, 843, 851 |
| MfeI | CAATTG | 1 cut(s) | 738 |
| MflI | RGATCY | 2 cut(s) | 42, 906 |
| MhlI | GDGCHC | 1 cut(s) | 318 |
| MlsI | TGGCCA | 1 cut(s) | 479 |
| MluCI | AATT | 5 cut(s) | 137, 303, 349, 738, 817 |
| MluNI | TGGCCA | 1 cut(s) | 479 |
| MlyI | GAGTC | 2 cut(s) | 175, 242 |
| MmeI | TCCRAC | 1 cut(s) | 768 |
| MnlI | CCTC | 8 cut(s) | 397, 555, 697, 738, 754, 805, 835, 897 |
| Mox20I | TGGCCA | 1 cut(s) | 479 |
| Mph1103I | ATGCAT | 1 cut(s) | 124 |
| MscI | TGGCCA | 1 cut(s) | 479 |
| Msp20I | TGGCCA | 1 cut(s) | 479 |
| MspI | CCGG | 2 cut(s) | 361, 833 |
| MspR9I | CCNGG | 1 cut(s) | 833 |
| MunI | CAATTG | 1 cut(s) | 738 |
| Mva1269I | GAATGC | 1 cut(s) | 96 |
| NciI | CCSGG | 1 cut(s) | 833 |
| NdeI | CATATG | 1 cut(s) | 164 |
| NdeII | GATC | 7 cut(s) | 42, 150, 259, 491, 554, 584, 906 |
| NlaIII | CATG | 6 cut(s) | 22, 122, 175, 476, 625, 638 |
| NlaIV | GGNNCC | 1 cut(s) | 908 |
| NsiI | ATGCAT | 1 cut(s) | 124 |
| NspI | RCATGY | 2 cut(s) | 122, 476 |
| PciSI | GCTCTTC | 1 cut(s) | 306 |
| PctI | GAATGC | 1 cut(s) | 96 |
| PfeI | GAWTC | 4 cut(s) | 132, 384, 431, 871 |
| PkrI | GCNGC | 2 cut(s) | 217, 658 |
| PleI | GAGTC | 2 cut(s) | 175, 241 |
| PpsI | GAGTC | 2 cut(s) | 175, 241 |
| PspN4I | GGNNCC | 1 cut(s) | 908 |
| PspPI | GGNCC | 2 cut(s) | 143, 168 |
| PstI | CTGCAG | 1 cut(s) | 232 |
| PsuI | RGATCY | 2 cut(s) | 42, 906 |
| RsaI | GTAC | 2 cut(s) | 652, 899 |
| RsaNI | GTAC | 2 cut(s) | 651, 898 |
| SapI | GCTCTTC | 1 cut(s) | 306 |
| SatI | GCNGC | 2 cut(s) | 216, 657 |
| Sau3AI | GATC | 7 cut(s) | 42, 150, 259, 491, 554, 584, 906 |
| Sau96I | GGNCC | 2 cut(s) | 143, 168 |
| ScaI | AGTACT | 1 cut(s) | 652 |
| SchI | GAGTC | 2 cut(s) | 175, 242 |
| ScrFI | CCNGG | 1 cut(s) | 833 |
| SduI | GDGCHC | 1 cut(s) | 318 |
| SetI | ASST | 9 cut(s) | 62, 268, 580, 708, 718, 748, 788, 827, 892 |
| SfaNI | GCATC | 2 cut(s) | 131, 577 |
| SfcI | CTRYAG | 1 cut(s) | 228 |
| SinI | GGWCC | 1 cut(s) | 168 |
| Sse9I | AATT | 5 cut(s) | 137, 303, 349, 738, 817 |
| SsiI | CCGC | 2 cut(s) | 215, 218 |
| SspI | AATATT | 1 cut(s) | 799 |
| SspMI | CTAG | 3 cut(s) | 390, 695, 783 |
| StyD4I | CCNGG | 1 cut(s) | 831 |
| TaaI | ACNGT | 1 cut(s) | 543 |
| TaiI | ACGT | 2 cut(s) | 62, 892 |
| TaqI | TCGA | 3 cut(s) | 81, 296, 598 |
| TasI | AATT | 5 cut(s) | 137, 303, 349, 738, 817 |
| TatI | WGTACW | 2 cut(s) | 650, 897 |
| TauI | GCSGC | 1 cut(s) | 218 |
| TfiI | GAWTC | 4 cut(s) | 132, 384, 431, 871 |
| TseI | GCWGC | 1 cut(s) | 656 |
| TspDTI | ATGAA | 6 cut(s) | 35, 151, 444, 610, 651, 843 |
| TspGWI | ACGGA | 1 cut(s) | 502 |
| VpaK11BI | GGWCC | 1 cut(s) | 168 |
| XapI | RAATTY | 1 cut(s) | 303 |
| XceI | RCATGY | 2 cut(s) | 122, 476 |
| XspI | CTAG | 3 cut(s) | 390, 695, 783 |
| ZrmI | AGTACT | 1 cut(s) | 652 |
| Zsp2I | ATGCAT | 1 cut(s) | 124 |