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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 396 |
| AccII | CGCG | 3 cut(s) | 86, 282, 386 |
| AciI | CCGC | 9 cut(s) | 325, 328, 351, 378, 381, 386, 396, 458, 461 |
| AcuI | CTGAAG | 1 cut(s) | 324 |
| AfaI | GTAC | 2 cut(s) | 334, 374 |
| AfeI | AGCGCT | 1 cut(s) | 438 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 13, 454 |
| AgsI | TTSAA | 2 cut(s) | 95, 189 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 236 |
| AluBI | AGCT | 2 cut(s) | 101, 261 |
| AluI | AGCT | 2 cut(s) | 101, 261 |
| Alw26I | GTCTC | 2 cut(s) | 266, 278 |
| Ama87I | CYCGRG | 1 cut(s) | 341 |
| Aor51HI | AGCGCT | 1 cut(s) | 438 |
| ApeKI | GCWGC | 1 cut(s) | 439 |
| AspLEI | GCGC | 5 cut(s) | 88, 282, 321, 386, 439 |
| AspS9I | GGNCC | 1 cut(s) | 4 |
| AsuHPI | GGTGA | 2 cut(s) | 232, 423 |
| AvaI | CYCGRG | 1 cut(s) | 341 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| BbvI | GCAGC | 1 cut(s) | 426 |
| BccI | CCATC | 1 cut(s) | 137 |
| BceAI | ACGGC | 1 cut(s) | 391 |
| BcoDI | GTCTC | 2 cut(s) | 266, 278 |
| BfoI | RGCGCY | 1 cut(s) | 440 |
| BisI | GCNGC | 7 cut(s) | 326, 329, 352, 379, 382, 440, 459 |
| BlsI | GCNGC | 7 cut(s) | 327, 330, 353, 380, 383, 441, 460 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 236 |
| BmeT110I | CYCGRG | 1 cut(s) | 341 |
| BmgT120I | GGNCC | 1 cut(s) | 4 |
| BmsI | GCATC | 2 cut(s) | 100, 428 |
| BsaJI | CCNNGG | 1 cut(s) | 340 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 13, 454 |
| BseDI | CCNNGG | 1 cut(s) | 340 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 13, 454 |
| BseMII | CTCAG | 3 cut(s) | 267, 329, 440 |
| BseXI | GCAGC | 1 cut(s) | 426 |
| Bsh1236I | CGCG | 3 cut(s) | 86, 282, 386 |
| Bsh1285I | CGRYCG | 2 cut(s) | 358, 405 |
| BsiEI | CGRYCG | 2 cut(s) | 358, 405 |
| BsiHKCI | CYCGRG | 1 cut(s) | 341 |
| BslFI | GGGAC | 1 cut(s) | 439 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 13, 454 |
| BsmAI | GTCTC | 2 cut(s) | 266, 278 |
| BsmFI | GGGAC | 1 cut(s) | 439 |
| BsoBI | CYCGRG | 1 cut(s) | 341 |
| Bsp143I | GATC | 2 cut(s) | 355, 402 |
| BspACI | CCGC | 9 cut(s) | 325, 328, 351, 378, 381, 386, 396, 458, 461 |
| BspCNI | CTCAG | 3 cut(s) | 268, 328, 441 |
| BspFNI | CGCG | 3 cut(s) | 86, 282, 386 |
| BsrBI | CCGCTC | 1 cut(s) | 396 |
| BssECI | CCNNGG | 1 cut(s) | 340 |
| BssMI | GATC | 2 cut(s) | 355, 402 |
| Bst6I | CTCTTC | 1 cut(s) | 264 |
| BstC8I | GCNNGC | 2 cut(s) | 323, 463 |
| BstDEI | CTNAG | 3 cut(s) | 276, 315, 449 |
| BstFNI | CGCG | 3 cut(s) | 86, 282, 386 |
| BstH2I | RGCGCY | 1 cut(s) | 440 |
| BstHHI | GCGC | 5 cut(s) | 88, 282, 321, 386, 439 |
| BstKTI | GATC | 2 cut(s) | 358, 405 |
| BstMAI | GTCTC | 2 cut(s) | 266, 278 |
| BstMBI | GATC | 2 cut(s) | 355, 402 |
| BstMCI | CGRYCG | 2 cut(s) | 358, 405 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 325, 471 |
| BstNSI | RCATGY | 1 cut(s) | 92 |
| BstUI | CGCG | 3 cut(s) | 86, 282, 386 |
| BstV1I | GCAGC | 1 cut(s) | 426 |
| BtsI | GCAGTG | 1 cut(s) | 56 |
| BtsIMutI | CAGTG | 1 cut(s) | 56 |
| Cac8I | GCNNGC | 2 cut(s) | 323, 463 |
| CfoI | GCGC | 5 cut(s) | 88, 282, 321, 386, 439 |
| Cfr13I | GGNCC | 1 cut(s) | 4 |
| CseI | GACGC | 1 cut(s) | 92 |
| Csp6I | GTAC | 2 cut(s) | 333, 373 |
| CviAII | CATG | 2 cut(s) | 89, 155 |
| CviJI | RGCY | 4 cut(s) | 101, 128, 261, 465 |
| CviKI_1 | RGCY | 4 cut(s) | 101, 128, 261, 465 |
| CviQI | GTAC | 2 cut(s) | 333, 373 |
| DdeI | CTNAG | 3 cut(s) | 276, 315, 449 |
| DpnI | GATC | 2 cut(s) | 357, 404 |
| DpnII | GATC | 2 cut(s) | 355, 402 |
| DriI | GACNNNNNGTC | 1 cut(s) | 236 |
| Eam1104I | CTCTTC | 1 cut(s) | 264 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 236 |
| EarI | CTCTTC | 1 cut(s) | 264 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| Eco47III | AGCGCT | 1 cut(s) | 438 |
| Eco57I | CTGAAG | 1 cut(s) | 324 |
| Eco88I | CYCGRG | 1 cut(s) | 341 |
| EcoT22I | ATGCAT | 1 cut(s) | 115 |
| FaeI | CATG | 2 cut(s) | 92, 158 |
| FaiI | YATR | 5 cut(s) | 90, 156, 161, 222, 267 |
| FaqI | GGGAC | 1 cut(s) | 439 |
| FatI | CATG | 2 cut(s) | 88, 154 |
| FauI | CCCGC | 2 cut(s) | 389, 454 |
| Fnu4HI | GCNGC | 7 cut(s) | 326, 329, 352, 379, 382, 440, 459 |
| Fsp4HI | GCNGC | 7 cut(s) | 326, 329, 352, 379, 382, 440, 459 |
| GlaI | GCGC | 5 cut(s) | 87, 281, 320, 385, 438 |
| GluI | GCNGC | 7 cut(s) | 326, 329, 352, 379, 382, 440, 459 |
| HaeII | RGCGCY | 1 cut(s) | 440 |
| HgaI | GACGC | 1 cut(s) | 92 |
| HhaI | GCGC | 5 cut(s) | 88, 282, 321, 386, 439 |
| Hin1II | CATG | 2 cut(s) | 92, 158 |
| Hin6I | GCGC | 5 cut(s) | 86, 280, 319, 384, 437 |
| HinP1I | GCGC | 5 cut(s) | 86, 280, 319, 384, 437 |
| HinfI | GANTC | 2 cut(s) | 206, 212 |
| HphI | GGTGA | 2 cut(s) | 232, 423 |
| Hpy188I | TCNGA | 3 cut(s) | 205, 211, 488 |
| HpyAV | CCTTC | 2 cut(s) | 89, 447 |
| HpyCH4V | TGCA | 8 cut(s) | 38, 49, 113, 133, 224, 419, 442, 474 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 325, 471 |
| HpyF3I | CTNAG | 3 cut(s) | 276, 315, 449 |
| Hsp92II | CATG | 2 cut(s) | 92, 158 |
| HspAI | GCGC | 5 cut(s) | 86, 280, 319, 384, 437 |
| Kzo9I | GATC | 2 cut(s) | 355, 402 |
| LmnI | GCTCC | 2 cut(s) | 98, 388 |
| LpnPI | CCDG | 8 cut(s) | 36, 241, 246, 247, 354, 408, 447, 461 |
| Lsp1109I | GCAGC | 1 cut(s) | 426 |
| LweI | GCATC | 2 cut(s) | 100, 428 |
| MaeIII | GTNAC | 1 cut(s) | 238 |
| MalI | GATC | 2 cut(s) | 357, 404 |
| MbiI | CCGCTC | 1 cut(s) | 396 |
| MboI | GATC | 2 cut(s) | 355, 402 |
| MboII | GAAGA | 2 cut(s) | 152, 281 |
| MnlI | CCTC | 6 cut(s) | 7, 117, 159, 172, 253, 350 |
| Mph1103I | ATGCAT | 1 cut(s) | 115 |
| MseI | TTAA | 1 cut(s) | 30 |
| MvnI | CGCG | 3 cut(s) | 86, 282, 386 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 325, 471 |
| NdeII | GATC | 2 cut(s) | 355, 402 |
| NlaIII | CATG | 2 cut(s) | 92, 158 |
| NmuCI | GTSAC | 1 cut(s) | 238 |
| NsiI | ATGCAT | 1 cut(s) | 115 |
| NspI | RCATGY | 1 cut(s) | 92 |
| PfeI | GAWTC | 2 cut(s) | 206, 212 |
| PkrI | GCNGC | 7 cut(s) | 327, 330, 353, 380, 383, 441, 460 |
| Ple19I | CGATCG | 2 cut(s) | 358, 405 |
| PspPI | GGNCC | 1 cut(s) | 4 |
| PvuI | CGATCG | 2 cut(s) | 358, 405 |
| RsaI | GTAC | 2 cut(s) | 334, 374 |
| RsaNI | GTAC | 2 cut(s) | 333, 373 |
| SaqAI | TTAA | 1 cut(s) | 30 |
| SatI | GCNGC | 7 cut(s) | 326, 329, 352, 379, 382, 440, 459 |
| Sau3AI | GATC | 2 cut(s) | 355, 402 |
| Sau96I | GGNCC | 1 cut(s) | 4 |
| SetI | ASST | 7 cut(s) | 18, 103, 183, 235, 245, 263, 450 |
| SfaNI | GCATC | 2 cut(s) | 100, 428 |
| SinI | GGWCC | 1 cut(s) | 4 |
| SsiI | CCGC | 9 cut(s) | 325, 328, 351, 378, 381, 386, 396, 458, 461 |
| SspI | AATATT | 1 cut(s) | 71 |
| TauI | GCSGC | 6 cut(s) | 328, 331, 354, 381, 384, 461 |
| TfiI | GAWTC | 2 cut(s) | 206, 212 |
| Tru1I | TTAA | 1 cut(s) | 30 |
| Tru9I | TTAA | 1 cut(s) | 30 |
| TscAI | CASTG | 1 cut(s) | 56 |
| TseFI | GTSAC | 1 cut(s) | 238 |
| TseI | GCWGC | 1 cut(s) | 439 |
| Tsp45I | GTSAC | 1 cut(s) | 238 |
| TspDTI | ATGAA | 1 cut(s) | 282 |
| TspRI | CASTG | 1 cut(s) | 56 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| XceI | RCATGY | 1 cut(s) | 92 |
| Zsp2I | ATGCAT | 1 cut(s) | 115 |