Rmu_sc0000418.1_g000018

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000418.1
OG0000044
Physical Location & Seq
Reverse (-)
111647 .. 114853
3207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000418.1_g000018.1.cds

Sequence Viewer

Length: 2364 bp
atggctaccccgatatgctcttggtcttttctgaacgtggagtcacctacgcaggcccactcttatgcctcggcggtggtgcaaccggtggtgtctcttgttaagttaccatcgccgatgatccacgatggtaaggctacaatgacgacctctgaggaaggataccaggcgggactagaaagatgtaagcatatgttactggctcgtcttcatatggcttctagtgaaaaaccctactctcctgtagatcttcacaagaaactatgccaagtttggggagggattggccagtggcaagctatccctatgggtaaaggctacttcacattcagttttgcttctgatgcagcagtttcaatggtctgggctcaagatgctgtttctttaaaatctggaacactctggagagaaaagtttggactctttgctaaggttctcgtggatgtggacttatcttctagtcctccttgtgaattggtggtttgtagaaccaaaggggaggttgtggtggtggaggttgaatatgaacatctcccggatttttgtactcactgtggtaatgttggccacagagttactgcttgcaagcttgttcagaagcctgactcttctgctcagggggaggagaatgaggagaatcggggcccttcttttgtccacaagtccacttctttaggtgttcatcatgaagtgagggggagagttattgaagaactgacagggaaatccccggtggtgcccgaggttaacaatgttggcactgagcagggtaaggattctgatgtggatgcatctgaaagtgagggaggtagtgagaatagtggtgacatgcatgagatggtcaaggggtctcattcagttcctattgatagttggtacgatgaatctgaacgtgtaaatgaacatggcgagtttaccgttgtcatgtctagatctcagaagcgtcaagctacattgactgttctctatgcaacagaccaacaggttactatagcagtggtggtggattctattacttgtgtgtttacttcagtttatgctagaaccacaatggcagatcgacgtagtctatggattcatctcgcagaagttaagagtagatttgtcacaggtccatggttagtatatggtgactttaatgcagttctcaatgcgcataagaagaaaggctgtgctccagtttgtcgccgctcttgtgaggagtttcaggcaatgtcaaatatttgtgaactggttcatgtggacaccaagggttcacagttcacttgggttagttctgatcataatcctctgcttatgtctttttccaagtcttctgggggccgacaaagtctttttaggtttcaaaagatgtggcttgagcataaagacttccataattttgtcaaaaggtgctgggtttctacaagtacctttggttgtcctctaacggtcttacaacataagttgcatgttctgcggaagtccctacggtcttggaattgggagatttttggtgatgtacatagaagggtggatgcacagcttgtggaattggagaatttgcagtcatctatttctatttctgggggttcagatttcaactttgcaaaggaagctgagattcaagcaaatttattagagtcgatgcgtttacaggaatctctttggtgtgcaaaatcaagagttagatggttgtctgagggggaccgtaactcttcattctttcatgtaatgtgtcatatacgtgaaactcaatcatcgatcaatcttatcaaggatgtttcacgggtattggaggatcctattgcaattcaaactcacatgctggattattatatgaatctcattacttctcaaggtgatggttactctactgaccttatttccagagtgattccttccatggttatggaagaagagaatgctagccttactattattccttcctcagacgagatttacaaggcagttaaggctatggatcctgctagtgccccaggtccggatggctttaatggttatttttttgtctcttgttgggacattgtgggtgaggatgttcgtggagcagtgcgtcacttttttatgtttggtcagcttccttcatcttttaattcaagcttgataattttaattcctaaggtggagcatgctaattctgttacacagtatcaacctattgctcttgctaacactacaccaaaaacgttaacacacaacactttttgcacaaaaaaaaaaaagtgttgtgtgatgaagaaaagtgaatcacacaacatgtttagtaaacttacgttgtataaggtggttaaaattctgaagtttttgtttagaaggtcatcgcacaacggttacaagaataatctgttgtctgaatcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

787

Amino Acids

88.14

Weight (kDa)

6.78

Isoelectric Point (pI)

48.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1155
AccB1I GGYRCC 1 cut(s) 736
AccBSI CCGCTC 1 cut(s) 1191
AccIII TCCGGA 1 cut(s) 1984
AciI CCGC 4 cut(s) 74, 170, 1189, 1459
AclI AACGTT 1 cut(s) 2189
AclWI GGATC 5 cut(s) 115, 1775, 1788, 1958, 1971
AcoI YGGCCR 2 cut(s) 286, 565
AcsI RAATTY 3 cut(s) 1540, 1612, 2295
AcuI CTGAAG 2 cut(s) 1014, 2321
AfaI GTAC 4 cut(s) 547, 878, 1411, 1503
AfiI CCNNNNNNNGG 2 cut(s) 274, 1984
AflIII ACRYGT 2 cut(s) 892, 2259
AgeI ACCGGT 1 cut(s) 85
AgsI TTSAA 8 cut(s) 357, 521, 710, 1346, 1582, 1607, 1796, 2100
AjnI CCWGG 2 cut(s) 165, 1978
AluBI AGCT 7 cut(s) 299, 589, 950, 1525, 1598, 2080, 2103
AluI AGCT 7 cut(s) 299, 589, 950, 1525, 1598, 2080, 2103
Alw21I GWGCWC 1 cut(s) 1177
Alw26I GTCTC 3 cut(s) 99, 855, 2017
AlwI GGATC 5 cut(s) 115, 1775, 1788, 1958, 1971
Ama87I CYCGRG 1 cut(s) 740
Aor13HI TCCGGA 1 cut(s) 1984
AoxI GGCC 5 cut(s) 54, 286, 565, 643, 1321
ApaI GGGCCC 1 cut(s) 647
ApeKI GCWGC 1 cut(s) 347
ApoI RAATTY 3 cut(s) 1540, 1612, 2295
AsiGI ACCGGT 1 cut(s) 85
Asp700I GAANNNNTTC 1 cut(s) 1233
AspLEI GCGC 1 cut(s) 1156
AspS9I GGNCC 7 cut(s) 55, 643, 644, 1112, 1321, 1687, 1982
AsuC2I CCSGG 2 cut(s) 536, 731
AsuHPI GGTGA 6 cut(s) 36, 836, 1142, 1508, 1853, 2045
AsuNHI GCTAGC 1 cut(s) 1907
AvaI CYCGRG 1 cut(s) 740
AvaII GGWCC 3 cut(s) 1112, 1687, 1982
AxyI CCTNAGG 1 cut(s) 2121
BaeGI GKGCMC 3 cut(s) 647, 741, 1978
BalI TGGCCA 2 cut(s) 288, 567
BamHI GGATCC 2 cut(s) 1780, 1963
BanI GGYRCC 1 cut(s) 736
BanII GRGCYC 2 cut(s) 370, 647
BauI CACGAG 1 cut(s) 437
BbsI GAAGAC 2 cut(s) 200, 1305
Bbv12I GWGCWC 1 cut(s) 1177
BbvI GCAGC 1 cut(s) 359
BccI CCATC 6 cut(s) 118, 122, 832, 1665, 1838, 1982
BciT130I CCWGG 2 cut(s) 167, 1980
BciVI GTATCC 1 cut(s) 155
BclI TGATCA 1 cut(s) 1279
BcnI CCSGG 2 cut(s) 536, 731
BcoDI GTCTC 3 cut(s) 99, 855, 2017
BfaI CTAG 7 cut(s) 176, 222, 459, 930, 1041, 1908, 1971
BfmI CTRYAG 2 cut(s) 243, 990
BfuI GTATCC 1 cut(s) 155
BglII AGATCT 2 cut(s) 247, 932
BisI GCNGC 2 cut(s) 348, 1189
BlsI GCNGC 2 cut(s) 349, 1190
Bme1390I CCNGG 4 cut(s) 167, 536, 731, 1980
Bme18I GGWCC 3 cut(s) 1112, 1687, 1982
BmeT110I CYCGRG 1 cut(s) 740
BmgT120I GGNCC 7 cut(s) 55, 643, 644, 1112, 1321, 1687, 1982
BmiI GGNNCC 7 cut(s) 644, 645, 738, 1322, 1688, 1782, 1965
BmrFI CCNGG 4 cut(s) 167, 536, 731, 1980
BmsI GCATC 6 cut(s) 334, 364, 778, 800, 1507, 1617
BmtI GCTAGC 1 cut(s) 1911
BpiI GAAGAC 2 cut(s) 200, 1305
BpmI CTGGAG 2 cut(s) 424, 1161
Bpu10I CCTNAGC 2 cut(s) 429, 615
BpuEI CTTGAG 3 cut(s) 354, 1379, 1821
BpuMI CCSGG 2 cut(s) 536, 731
Bsa29I ATCGAT 1 cut(s) 1742
BsaAI YACGTR 1 cut(s) 1727
BsaBI GATNNNNATC 1 cut(s) 1284
BsaI GGTCTC 1 cut(s) 855
BsaJI CCNNGG 7 cut(s) 69, 729, 741, 1115, 1248, 1884, 1978
BsaWI WCCGGW 2 cut(s) 85, 1984
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 1984
Bse118I RCCGGY 1 cut(s) 85
Bse1I ACTGG 4 cut(s) 204, 289, 1178, 1236
Bse21I CCTNAGG 1 cut(s) 2121
Bse3DI GCAATG 1 cut(s) 1218
Bse8I GATNNNNATC 1 cut(s) 1284
BseAI TCCGGA 1 cut(s) 1984
BseBI CCWGG 2 cut(s) 167, 1980
BseCI ATCGAT 1 cut(s) 1742
BseDI CCNNGG 7 cut(s) 69, 729, 741, 1115, 1248, 1884, 1978
BseGI GGATG 6 cut(s) 448, 793, 1522, 1765, 1993, 2044
BseJI GATNNNNATC 1 cut(s) 1284
BseLI CCNNNNNNNGG 2 cut(s) 274, 1984
BseMI GCAATG 1 cut(s) 1218
BseMII CTCAG 7 cut(s) 144, 629, 753, 950, 1590, 1671, 1944
BseNI ACTGG 4 cut(s) 204, 289, 1178, 1236
BseRI GAGGAG 3 cut(s) 638, 647, 1214
BseSI GKGCMC 3 cut(s) 647, 741, 1978
BseXI GCAGC 1 cut(s) 359
BseYI CCCAGC 1 cut(s) 1395
BshFI GGCC 5 cut(s) 56, 288, 567, 645, 1323
BshNI GGYRCC 1 cut(s) 736
BshTI ACCGGT 1 cut(s) 85
BshVI ATCGAT 1 cut(s) 1742
BsiHKAI GWGCWC 1 cut(s) 1177
BsiHKCI CYCGRG 1 cut(s) 740
BsiSI CCGG 4 cut(s) 86, 536, 731, 1985
BslFI GGGAC 4 cut(s) 186, 1450, 1700, 2036
BslI CCNNNNNNNGG 2 cut(s) 274, 1984
BsmAI GTCTC 3 cut(s) 99, 855, 2017
BsmFI GGGAC 4 cut(s) 186, 1450, 1700, 2036
BsmI GAATGC 1 cut(s) 1909
BsnI GGCC 5 cut(s) 56, 288, 567, 645, 1323
Bso31I GGTCTC 1 cut(s) 855
BsoBI CYCGRG 1 cut(s) 740
Bsp120I GGGCCC 1 cut(s) 643
Bsp1286I GDGCHC 5 cut(s) 370, 647, 741, 1177, 1978
Bsp13I TCCGGA 1 cut(s) 1984
Bsp1407I TGTACA 1 cut(s) 1501
Bsp143I GATC 8 cut(s) 120, 247, 932, 1057, 1279, 1743, 1780, 1963
Bsp19I CCATGG 2 cut(s) 1115, 1884
BspACI CCGC 4 cut(s) 74, 170, 1189, 1459
BspANI GGCC 5 cut(s) 56, 288, 567, 645, 1323
BspCNI CTCAG 7 cut(s) 145, 628, 754, 949, 1591, 1672, 1943
BspDI ATCGAT 1 cut(s) 1742
BspEI TCCGGA 1 cut(s) 1984
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 7 cut(s) 644, 645, 738, 1322, 1688, 1782, 1965
BspOI GCTAGC 1 cut(s) 1911
BspPI GGATC 5 cut(s) 115, 1775, 1788, 1958, 1971
BspT107I GGYRCC 1 cut(s) 736
BspTNI GGTCTC 1 cut(s) 855
BsrBI CCGCTC 1 cut(s) 1191
BsrDI GCAATG 1 cut(s) 1218
BsrFI RCCGGY 1 cut(s) 85
BsrGI TGTACA 1 cut(s) 1501
BsrI ACTGG 4 cut(s) 204, 289, 1178, 1236
BssAI RCCGGY 1 cut(s) 85
BssECI CCNNGG 7 cut(s) 69, 729, 741, 1115, 1248, 1884, 1978
BssMI GATC 8 cut(s) 120, 247, 932, 1057, 1279, 1743, 1780, 1963
BssSI CACGAG 1 cut(s) 437
BssT1I CCWWGG 3 cut(s) 1115, 1248, 1884
Bst2BI CACGAG 1 cut(s) 437
Bst2UI CCWGG 2 cut(s) 167, 1980
Bst4CI ACNGT 9 cut(s) 554, 919, 961, 1260, 1432, 1473, 1691, 2151, 2333
Bst6I CTCTTC 3 cut(s) 613, 1702, 1893
BstAPI GCANNNNNTGC 1 cut(s) 1456
BstAUI TGTACA 1 cut(s) 1501
BstBAI YACGTR 1 cut(s) 1727
BstC8I GCNNGC 6 cut(s) 54, 297, 583, 587, 1909, 2133
BstDEI CTNAG 9 cut(s) 153, 429, 615, 762, 936, 1599, 1680, 1930, 2121
BstDSI CCRYGG 2 cut(s) 1115, 1884
BstF5I GGATG 6 cut(s) 448, 793, 1522, 1765, 1993, 2044
BstHHI GCGC 1 cut(s) 1156
BstKTI GATC 8 cut(s) 123, 250, 935, 1060, 1282, 1746, 1783, 1966
BstMAI GTCTC 3 cut(s) 99, 855, 2017
BstMBI GATC 8 cut(s) 120, 247, 932, 1057, 1279, 1743, 1780, 1963
BstMWI GCNNNNNNNGC 5 cut(s) 344, 374, 1456, 1595, 1955
BstNI CCWGG 2 cut(s) 167, 1980
BstNSI RCATGY 5 cut(s) 832, 1454, 1807, 2135, 2263
BstSCI CCNGG 4 cut(s) 165, 534, 729, 1978
BstSFI CTRYAG 2 cut(s) 243, 990
BstSLI GKGCMC 3 cut(s) 647, 741, 1978
BstV1I GCAGC 1 cut(s) 359
BstV2I GAAGAC 2 cut(s) 200, 1305
BstX2I RGATCY 4 cut(s) 247, 932, 1780, 1963
BstXI CCANNNNNNTGG 1 cut(s) 1891
BstYI RGATCY 4 cut(s) 247, 932, 1780, 1963
Bsu15I ATCGAT 1 cut(s) 1742
Bsu36I CCTNAGG 1 cut(s) 2121
BsuI GTATCC 1 cut(s) 155
BsuRI GGCC 5 cut(s) 56, 288, 567, 645, 1323
BsuTUI ATCGAT 1 cut(s) 1742
BtgI CCRYGG 2 cut(s) 1115, 1884
BtgZI GCGATG 2 cut(s) 96, 2307
BtsCI GGATG 6 cut(s) 448, 793, 1522, 1765, 1993, 2044
BtsI GCAGTG 2 cut(s) 1002, 2058
BtsIMutI CAGTG 5 cut(s) 296, 550, 759, 1002, 2058
Cac8I GCNNGC 6 cut(s) 54, 297, 583, 587, 1909, 2133
CciI TCATGA 1 cut(s) 685
CfoI GCGC 1 cut(s) 1156
Cfr10I RCCGGY 1 cut(s) 85
Cfr13I GGNCC 7 cut(s) 55, 643, 644, 1112, 1321, 1687, 1982
ClaI ATCGAT 1 cut(s) 1742
CseI GACGC 2 cut(s) 932, 2045
Csp6I GTAC 4 cut(s) 546, 877, 1410, 1502
CspAI ACCGGT 1 cut(s) 85
CspCI CAANNNNNGTGG 2 cut(s) 1334, 1369
CviQI GTAC 4 cut(s) 546, 877, 1410, 1502
DdeI CTNAG 9 cut(s) 153, 429, 615, 762, 936, 1599, 1680, 1930, 2121
DpnI GATC 8 cut(s) 122, 249, 934, 1059, 1281, 1745, 1782, 1965
DpnII GATC 8 cut(s) 120, 247, 932, 1057, 1279, 1743, 1780, 1963
DraI TTTAAA 1 cut(s) 387
EaeI YGGCCR 2 cut(s) 286, 565
Eam1104I CTCTTC 3 cut(s) 613, 1702, 1893
EarI CTCTTC 3 cut(s) 613, 1702, 1893
Eco130I CCWWGG 3 cut(s) 1115, 1248, 1884
Eco24I GRGCYC 2 cut(s) 370, 647
Eco31I GGTCTC 1 cut(s) 855
Eco47I GGWCC 3 cut(s) 1112, 1687, 1982
Eco57I CTGAAG 2 cut(s) 1014, 2321
Eco81I CCTNAGG 1 cut(s) 2121
Eco88I CYCGRG 1 cut(s) 740
EcoO109I RGGNCCY 2 cut(s) 643, 644
EcoRII CCWGG 2 cut(s) 165, 1978
EcoT14I CCWWGG 3 cut(s) 1115, 1248, 1884
EcoT22I ATGCAT 2 cut(s) 793, 834
EcoT38I GRGCYC 2 cut(s) 370, 647
ErhI CCWWGG 3 cut(s) 1115, 1248, 1884
FaqI GGGAC 4 cut(s) 186, 1450, 1700, 2036
FauI CCCGC 1 cut(s) 163
FauNDI CATATG 2 cut(s) 192, 213
FbaI TGATCA 1 cut(s) 1279
Fnu4HI GCNGC 2 cut(s) 348, 1189
FokI GGATG 6 cut(s) 455, 800, 1529, 1772, 2000, 2051
FriOI GRGCYC 2 cut(s) 370, 647
Fsp4HI GCNGC 2 cut(s) 348, 1189
FspAI RTGCGCAY 1 cut(s) 1155
FspBI CTAG 7 cut(s) 176, 222, 459, 930, 1041, 1908, 1971
FspI TGCGCA 1 cut(s) 1155
GlaI GCGC 1 cut(s) 1155
GluI GCNGC 2 cut(s) 348, 1189
GsaI CCCAGC 1 cut(s) 1399
GsuI CTGGAG 2 cut(s) 424, 1161
HaeIII GGCC 5 cut(s) 56, 288, 567, 645, 1323
HapII CCGG 4 cut(s) 86, 536, 731, 1985
HgaI GACGC 2 cut(s) 932, 2045
HhaI GCGC 1 cut(s) 1156
Hin6I GCGC 1 cut(s) 1154
HinP1I GCGC 1 cut(s) 1154
HincII GTYRAC 2 cut(s) 748, 2193
HindII GTYRAC 2 cut(s) 748, 2193
HindIII AAGCTT 2 cut(s) 587, 2101
HpaI GTTAAC 2 cut(s) 748, 2193
HpaII CCGG 4 cut(s) 86, 536, 731, 1985
HphI GGTGA 6 cut(s) 36, 836, 1142, 1508, 1853, 2045
Hpy188III TCNNGA 8 cut(s) 371, 393, 403, 686, 930, 1662, 1869, 1985
Hpy99I CGWCG 1 cut(s) 1065
HpyAV CCTTC 7 cut(s) 152, 657, 1503, 1890, 1935, 2094, 2310
HpyCH4III ACNGT 9 cut(s) 554, 919, 961, 1260, 1432, 1473, 1691, 2151, 2333
HpyCH4IV ACGT 6 cut(s) 36, 892, 1063, 1726, 2189, 2276
HpyF10VI GCNNNNNNNGC 5 cut(s) 344, 374, 1456, 1595, 1955
HpyF3I CTNAG 9 cut(s) 153, 429, 615, 762, 936, 1599, 1680, 1930, 2121
HpySE526I ACGT 6 cut(s) 36, 892, 1063, 1726, 2189, 2276
HspAI GCGC 1 cut(s) 1154
Kpn2I TCCGGA 1 cut(s) 1984
Ksp22I TGATCA 1 cut(s) 1279
KspAI GTTAAC 2 cut(s) 748, 2193
Kzo9I GATC 8 cut(s) 120, 247, 932, 1057, 1279, 1743, 1780, 1963
LmnI GCTCC 3 cut(s) 1180, 2048, 2128
Lsp1109I GCAGC 1 cut(s) 359
LweI GCATC 6 cut(s) 334, 364, 778, 800, 1507, 1617
MaeI CTAG 7 cut(s) 176, 222, 459, 930, 1041, 1908, 1971
MaeII ACGT 6 cut(s) 36, 892, 1063, 1726, 2189, 2276
MalI GATC 8 cut(s) 122, 249, 934, 1059, 1281, 1745, 1782, 1965
MbiI CCGCTC 1 cut(s) 1191
MboI GATC 8 cut(s) 120, 247, 932, 1057, 1279, 1743, 1780, 1963
MflI RGATCY 4 cut(s) 247, 932, 1780, 1963
MhlI GDGCHC 5 cut(s) 370, 647, 741, 1177, 1978
MlsI TGGCCA 2 cut(s) 288, 567
MluNI TGGCCA 2 cut(s) 288, 567
MlyI GAGTC 4 cut(s) 50, 414, 599, 1631
Mox20I TGGCCA 2 cut(s) 288, 567
Mph1103I ATGCAT 2 cut(s) 793, 834
MroI TCCGGA 1 cut(s) 1984
MroXI GAANNNNTTC 1 cut(s) 1233
MscI TGGCCA 2 cut(s) 288, 567
MslI CAYNNNNRTG 3 cut(s) 63, 1725, 1889
Msp20I TGGCCA 2 cut(s) 288, 567
MspI CCGG 4 cut(s) 86, 536, 731, 1985
MspR9I CCNGG 4 cut(s) 167, 536, 731, 1980
Mva1269I GAATGC 1 cut(s) 1909
MvaI CCWGG 2 cut(s) 167, 1980
MwoI GCNNNNNNNGC 5 cut(s) 344, 374, 1456, 1595, 1955
NciI CCSGG 2 cut(s) 536, 731
NcoI CCATGG 2 cut(s) 1115, 1884
NdeI CATATG 2 cut(s) 192, 213
NdeII GATC 8 cut(s) 120, 247, 932, 1057, 1279, 1743, 1780, 1963
NheI GCTAGC 1 cut(s) 1907
NlaIV GGNNCC 7 cut(s) 644, 645, 738, 1322, 1688, 1782, 1965
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 5 cut(s) 42, 824, 1105, 1130, 2057
NsbI TGCGCA 1 cut(s) 1155
NsiI ATGCAT 2 cut(s) 793, 834
NspI RCATGY 5 cut(s) 832, 1454, 1807, 2135, 2263
PaeI GCATGC 1 cut(s) 2135
PagI TCATGA 1 cut(s) 685
PciI ACATGT 1 cut(s) 2259
PctI GAATGC 1 cut(s) 1909
PdmI GAANNNNTTC 1 cut(s) 1233
PflFI GACNNNGTC 2 cut(s) 1065, 1329
PfoI TCCNGGA 1 cut(s) 534
PinAI ACCGGT 1 cut(s) 85
PkrI GCNGC 2 cut(s) 349, 1190
PleI GAGTC 4 cut(s) 49, 414, 599, 1630
PpsI GAGTC 4 cut(s) 49, 414, 599, 1630
Ppu21I YACGTR 1 cut(s) 1727
PscI ACATGT 1 cut(s) 2259
Psp1406I AACGTT 1 cut(s) 2189
Psp6I CCWGG 2 cut(s) 165, 1978
PspFI CCCAGC 1 cut(s) 1395
PspGI CCWGG 2 cut(s) 165, 1978
PspN4I GGNNCC 7 cut(s) 644, 645, 738, 1322, 1688, 1782, 1965
PspOMI GGGCCC 1 cut(s) 643
PspPI GGNCC 7 cut(s) 55, 643, 644, 1112, 1321, 1687, 1982
PsuI RGATCY 4 cut(s) 247, 932, 1780, 1963
PsyI GACNNNGTC 2 cut(s) 1065, 1329
RsaI GTAC 4 cut(s) 547, 878, 1411, 1503
RsaNI GTAC 4 cut(s) 546, 877, 1410, 1502
RseI CAYNNNNRTG 3 cut(s) 63, 1725, 1889
SatI GCNGC 2 cut(s) 348, 1189
Sau3AI GATC 8 cut(s) 120, 247, 932, 1057, 1279, 1743, 1780, 1963
Sau96I GGNCC 7 cut(s) 55, 643, 644, 1112, 1321, 1687, 1982
SchI GAGTC 4 cut(s) 50, 414, 599, 1631
ScrFI CCNGG 4 cut(s) 167, 536, 731, 1980
SduI GDGCHC 5 cut(s) 370, 647, 741, 1177, 1978
SfaNI GCATC 6 cut(s) 334, 364, 778, 800, 1507, 1617
SfcI CTRYAG 2 cut(s) 243, 990
SinI GGWCC 3 cut(s) 1112, 1687, 1982
SmiMI CAYNNNNRTG 3 cut(s) 63, 1725, 1889
SmlI CTYRAG 3 cut(s) 369, 1358, 1836
SmoI CTYRAG 3 cut(s) 369, 1358, 1836
SphI GCATGC 1 cut(s) 2135
SsiI CCGC 4 cut(s) 74, 170, 1189, 1459
SspI AATATT 1 cut(s) 1222
SspMI CTAG 7 cut(s) 176, 222, 459, 930, 1041, 1908, 1971
StyD4I CCNGG 4 cut(s) 165, 534, 729, 1978
StyI CCWWGG 3 cut(s) 1115, 1248, 1884
TaaI ACNGT 9 cut(s) 554, 919, 961, 1260, 1432, 1473, 1691, 2151, 2333
TaiI ACGT 6 cut(s) 39, 895, 1066, 1729, 2192, 2279
TaqI TCGA 3 cut(s) 1060, 1625, 1742
TatI WGTACW 2 cut(s) 545, 1501
TauI GCSGC 1 cut(s) 1191
TscAI CASTG 5 cut(s) 296, 557, 766, 1002, 2058
TseFI GTSAC 5 cut(s) 42, 824, 1105, 1130, 2057
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 5 cut(s) 42, 824, 1105, 1130, 2057
TspRI CASTG 5 cut(s) 296, 557, 766, 1002, 2058
Tth111I GACNNNGTC 2 cut(s) 1065, 1329
VpaK11BI GGWCC 3 cut(s) 1112, 1687, 1982
XapI RAATTY 3 cut(s) 1540, 1612, 2295
XbaI TCTAGA 1 cut(s) 929
XceI RCATGY 5 cut(s) 832, 1454, 1807, 2135, 2263
XmnI GAANNNNTTC 1 cut(s) 1233
XspI CTAG 7 cut(s) 176, 222, 459, 930, 1041, 1908, 1971
Zsp2I ATGCAT 2 cut(s) 793, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.