Rmu_sc0000434.1_g000008

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000434.1
OG0000044
Physical Location & Seq
Forward (+)
49312 .. 51961
2650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000434.1_g000008.1.cds

Sequence Viewer

Length: 2292 bp
atgatgcagcccccaacctccacctccgtcggcccagatccttcacaaccatcgaccttgaaccctaagcctacttttgcatcagtactagcccgagatcagccgctaggtttcgccattgatgatctccctctgccttcgctgaacgacgggatggttacagttcagatttctgagaactccttcctccgaggtcttgacaaatgcaaaaccatcctagttggtaaactcttgtctcccccaaatggtataatgccaagagcccatgaacttgcacagcgtttgaagcttttctggaatagtgtttcaaactggtctgttgctccaatgggtaaggggttcttcacgttacaatttcagtctattgatgacatgcaactaatctggtcactgggctccatcagcctcaacccgggcatcttgaggctgatcaaatggactccagacttctccccttcatcgtataagaacacatttgtgcagatttgggtgcggttttgggacctaggttttgcttattgggatcaacaaactctgtttgagattgctagaggaattggcaccccaattaagcttgacccgagaacagccaataggtcaattggactttatgcaagggttcttgttgatgtggatctctcaatgccactacgtgataaaatcaaagtaacccgagctcagggactttcaactgtggccagtgttgagtatgagtctgtgcccgttctgtgtgattattgtggtattgtggggcactctgtcaacaaatgcaaaaacaaacaagtaaaccgggagtttggtgcaaggatcgagaacaagagtgatcgtggttcgtggacgctctcgcgagagggtgcttatgatcatggggagcaacccttgctggccctcatactgcaggagacgctagtgcatgctcccagtggtttcaagagcacaataggagcacagagggaggcggtttctgctcgggcaccgatagaaattattaaagagacagcttcatccacacaggtctccacctcggtggagcaggatggaaagttagcaccattgggagaggtgcctgaagtggcttctgcagacttgtcgaaggagatgcttgaggagggggagtttattccagttgtttccaaaaaatccaagaaactagagatgcacccggccaaagcagaagtgaagacaaagcaaggtgtttccaatcacagcaccaagagggcactcgtgcagaaggtggattctattccggttgctttctggagatctctgggcctccgactcgtaactactaatgatagggacaatttagctcccaatatctggtttctctgtcacgaagctctctcactgcaggttctttcagtgccttcccagcagattactgtatcttttcagggtccttgtgtggtcttcggggatttcaattgtgttttcggcgctcatgaaaagcgcggtggtaacacaccaagcactcgggcctgtctagagtttcagcaaatgtgctcctcttgcaatttgattgatgtgcccaccaaaggtttggtttacacctggtcaaatcggcgcactgaagtccgcttggatagagcccttggaaatctgagttggtttaattcctgggtggccatggaatgctgcaccctcactagagcaacttcggatcactgttcaattttgttgagctgctcaaagcgtgggagagtcattaaagctccttttcgcttccaaagccactggcttcaggttccaaacttccttgatctgatcagagaatattgggggactttacggttttatggctgccctcaaatcattctggcttccaagctcagggccttgaaatctatgttgagagtttggagcagaaactccattggtgatgttcacctgcgggtcaatgcttcaaatgagagtttggatcaaatacaagaggaaatttctagacttagtccttcagaggagaggttcttacgggaagatgtcgcgcattcaagattcatctcggatctagctttacaagctgcttttctccaagacaaatcaaggttacggtggctaaaggatggtgatagaaacacctcttttttgcataatatggccaagctcagacgtctaaacaaatccatatcctttctcaaggtgaatcacgaaattattacagacgcaggggctattgaggatcatgtagtgcaacactttgaaatgactttcactaaggacgcctctatagtgaacatgggccttgtggaacgtactattcctcagctggtcactgaggctgaaaatgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

763

Amino Acids

85.4

Weight (kDa)

8.82

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1896
AatII GACGTC 1 cut(s) 2113
Acc36I ACCTGC 2 cut(s) 1342, 1896
AccB1I GGYRCC 3 cut(s) 560, 973, 1063
AccB7I CCANNNNNTGG 1 cut(s) 1320
AccII CGCG 3 cut(s) 847, 1452, 1985
AciI CCGC 6 cut(s) 104, 493, 959, 1452, 1576, 1891
AclWI GGATC 8 cut(s) 32, 531, 642, 815, 1668, 1926, 2013, 2187
AcoI YGGCCR 4 cut(s) 696, 1164, 1623, 2097
AcsI RAATTY 1 cut(s) 1935
AcuI CTGAAG 4 cut(s) 1089, 1590, 1724, 1938
AcyI GRCGYC 2 cut(s) 2110, 2220
AdeI CACNNNGTG 1 cut(s) 653
AfaI GTAC 2 cut(s) 87, 2254
AfiI CCNNNNNNNGG 6 cut(s) 245, 412, 679, 1320, 1535, 1830
AjnI CCWGG 2 cut(s) 1550, 1616
AjuI GAANNNNNNNTTGG 2 cut(s) 1588, 1620
AleI CACNNNNGTG 2 cut(s) 476, 1025
Alw21I GWGCWC 4 cut(s) 679, 938, 949, 1505
Alw26I GTCTC 4 cut(s) 240, 896, 989, 1021
AlwI GGATC 8 cut(s) 32, 531, 642, 815, 1668, 1926, 2013, 2187
Ama87I CYCGRG 6 cut(s) 93, 412, 580, 672, 969, 1473
ApeKI GCWGC 5 cut(s) 7, 1635, 1683, 1800, 2021
ApoI RAATTY 1 cut(s) 1935
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
Asp700I GAANNNNTTC 2 cut(s) 182, 290
AspA2I CCTAGG 1 cut(s) 505
AspLEI GCGC 4 cut(s) 1439, 1452, 1566, 1987
AspS9I GGNCC 8 cut(s) 32, 502, 886, 1270, 1397, 1476, 1833, 2239
AsuC2I CCSGG 4 cut(s) 413, 414, 791, 1163
AsuHPI GGTGA 4 cut(s) 1877, 1889, 2078, 2152
AvaI CYCGRG 6 cut(s) 93, 412, 580, 672, 969, 1473
AvaII GGWCC 2 cut(s) 502, 1397
AvrII CCTAGG 1 cut(s) 505
BaeGI GKGCMC 5 cut(s) 723, 756, 976, 1222, 1530
BalI TGGCCA 3 cut(s) 698, 1625, 2099
BanI GGYRCC 3 cut(s) 560, 973, 1063
BanII GRGCYC 4 cut(s) 265, 398, 679, 1591
BauI CACGAG 1 cut(s) 1223
BbsI GAAGAC 2 cut(s) 1187, 1402
Bbv12I GWGCWC 4 cut(s) 679, 938, 949, 1505
BbvCI CCTCAGC 1 cut(s) 2262
BbvI GCAGC 5 cut(s) 19, 1622, 1670, 1787, 2008
BccI CCATC 6 cut(s) 58, 148, 221, 407, 1031, 2057
BcgI CGANNNNNNTGC 4 cut(s) 1071, 1081, 1105, 1115
BciT130I CCWGG 2 cut(s) 1552, 1618
BclI TGATCA 3 cut(s) 429, 862, 1764
BcnI CCSGG 4 cut(s) 413, 414, 791, 1163
BcoDI GTCTC 4 cut(s) 240, 896, 989, 1021
BfmI CTRYAG 4 cut(s) 896, 1080, 1349, 2226
BfoI RGCGCY 1 cut(s) 1440
BfuAI ACCTGC 2 cut(s) 1342, 1896
BglII AGATCT 1 cut(s) 1262
BisI GCNGC 6 cut(s) 8, 104, 1636, 1684, 1801, 2022
BlnI CCTAGG 1 cut(s) 505
BlsI GCNGC 6 cut(s) 9, 105, 1637, 1685, 1802, 2023
BmcAI AGTACT 1 cut(s) 87
Bme1390I CCNGG 6 cut(s) 413, 414, 791, 1163, 1552, 1618
Bme18I GGWCC 2 cut(s) 502, 1397
BmeT110I CYCGRG 6 cut(s) 93, 412, 580, 672, 969, 1473
BmgT120I GGNCC 8 cut(s) 32, 502, 886, 1270, 1397, 1476, 1833, 2239
BmiI GGNNCC 7 cut(s) 397, 503, 562, 975, 1065, 1398, 1746
BmrFI CCNGG 6 cut(s) 413, 414, 791, 1163, 1552, 1618
BmrI ACTGGG 2 cut(s) 401, 915
BmsI GCATC 4 cut(s) 89, 426, 1089, 1146
BmuI ACTGGG 2 cut(s) 401, 915
BpiI GAAGAC 2 cut(s) 1187, 1402
BpmI CTGGAG 2 cut(s) 426, 1279
Bpu10I CCTNAGC 4 cut(s) 66, 678, 1829, 2262
BpuEI CTTGAG 3 cut(s) 442, 1124, 2120
BpuMI CCSGG 4 cut(s) 413, 414, 791, 1163
BsaAI YACGTR 1 cut(s) 653
BsaBI GATNNNNATC 1 cut(s) 633
BsaHI GRCGYC 2 cut(s) 2110, 2220
BsaI GGTCTC 1 cut(s) 1021
BsaJI CCNNGG 7 cut(s) 190, 412, 505, 1023, 1591, 1617, 1626
BsaWI WCCGGW 1 cut(s) 1246
BsaXI ACNNNNNCTCC 2 cut(s) 1100, 1130
Bsc4I CCNNNNNNNGG 6 cut(s) 245, 412, 679, 1320, 1535, 1830
Bse1I ACTGG 6 cut(s) 317, 396, 699, 921, 1124, 1739
Bse8I GATNNNNATC 1 cut(s) 633
BseBI CCWGG 2 cut(s) 1552, 1618
BseDI CCNNGG 7 cut(s) 190, 412, 505, 1023, 1591, 1617, 1626
BseGI GGATG 5 cut(s) 159, 213, 1004, 1042, 2068
BseJI GATNNNNATC 1 cut(s) 633
BseLI CCNNNNNNNGG 6 cut(s) 245, 412, 679, 1320, 1535, 1830
BseMII CTCAG 7 cut(s) 165, 692, 1592, 1843, 2119, 2265, 2276
BseNI ACTGG 6 cut(s) 317, 396, 699, 921, 1124, 1739
BseRI GAGGAG 3 cut(s) 1121, 1495, 1973
BseSI GKGCMC 5 cut(s) 723, 756, 976, 1222, 1530
BseXI GCAGC 5 cut(s) 19, 1622, 1670, 1787, 2008
BseYI CCCAGC 1 cut(s) 1371
BsgI GTGCAG 3 cut(s) 500, 1247, 1621
Bsh1236I CGCG 3 cut(s) 847, 1452, 1985
BshNI GGYRCC 3 cut(s) 560, 973, 1063
BsiHKAI GWGCWC 4 cut(s) 679, 938, 949, 1505
BsiHKCI CYCGRG 6 cut(s) 93, 412, 580, 672, 969, 1473
BsiSI CCGG 4 cut(s) 413, 790, 1163, 1247
BslFI GGGAC 4 cut(s) 515, 696, 1313, 1795
BslI CCNNNNNNNGG 6 cut(s) 245, 412, 679, 1320, 1535, 1830
BsmAI GTCTC 4 cut(s) 240, 896, 989, 1021
BsmBI CGTCTC 1 cut(s) 896
BsmFI GGGAC 4 cut(s) 515, 696, 1313, 1795
BsmI GAATGC 2 cut(s) 1637, 1987
Bso31I GGTCTC 1 cut(s) 1021
BsoBI CYCGRG 6 cut(s) 93, 412, 580, 672, 969, 1473
Bsp19I CCATGG 1 cut(s) 1626
Bsp68I TCGCGA 1 cut(s) 847
BspACI CCGC 6 cut(s) 104, 493, 959, 1452, 1576, 1891
BspCNI CTCAG 7 cut(s) 166, 691, 1593, 1842, 2118, 2266, 2275
BspFNI CGCG 3 cut(s) 847, 1452, 1985
BspHI TCATGA 1 cut(s) 1441
BspLI GGNNCC 7 cut(s) 397, 503, 562, 975, 1065, 1398, 1746
BspMAI CTGCAG 3 cut(s) 900, 1084, 1353
BspMI ACCTGC 2 cut(s) 1342, 1896
BspPI GGATC 8 cut(s) 32, 531, 642, 815, 1668, 1926, 2013, 2187
BspT107I GGYRCC 3 cut(s) 560, 973, 1063
BspTNI GGTCTC 1 cut(s) 1021
BsrI ACTGG 6 cut(s) 317, 396, 699, 921, 1124, 1739
BssECI CCNNGG 7 cut(s) 190, 412, 505, 1023, 1591, 1617, 1626
BssNI GRCGYC 2 cut(s) 2110, 2220
BssSI CACGAG 1 cut(s) 1223
BssT1I CCWWGG 3 cut(s) 505, 1591, 1626
Bst2BI CACGAG 1 cut(s) 1223
Bst2UI CCWGG 2 cut(s) 1552, 1618
Bst4CI ACNGT 6 cut(s) 163, 694, 1384, 1667, 1791, 2052
BstACI GRCGYC 2 cut(s) 2110, 2220
BstAPI GCANNNNNTGC 1 cut(s) 880
BstBAI YACGTR 1 cut(s) 653
BstC8I GCNNGC 2 cut(s) 885, 915
BstDSI CCRYGG 1 cut(s) 1626
BstF5I GGATG 5 cut(s) 159, 213, 1004, 1042, 2068
BstFNI CGCG 3 cut(s) 847, 1452, 1985
BstH2I RGCGCY 1 cut(s) 1440
BstHHI GCGC 4 cut(s) 1439, 1452, 1566, 1987
BstMAI GTCTC 4 cut(s) 240, 896, 989, 1021
BstNI CCWGG 2 cut(s) 1552, 1618
BstNSI RCATGY 2 cut(s) 376, 917
BstSCI CCNGG 6 cut(s) 411, 412, 789, 1161, 1550, 1616
BstSFI CTRYAG 4 cut(s) 896, 1080, 1349, 2226
BstSLI GKGCMC 5 cut(s) 723, 756, 976, 1222, 1530
BstUI CGCG 3 cut(s) 847, 1452, 1985
BstV1I GCAGC 5 cut(s) 19, 1622, 1670, 1787, 2008
BstV2I GAAGAC 2 cut(s) 1187, 1402
BstX2I RGATCY 4 cut(s) 37, 634, 1262, 2005
BstXI CCANNNNNNTGG 2 cut(s) 1027, 1540
BstYI RGATCY 4 cut(s) 37, 634, 1262, 2005
BtgI CCRYGG 1 cut(s) 1626
BtsCI GGATG 5 cut(s) 159, 213, 1004, 1042, 2068
BtsI GCAGTG 1 cut(s) 1346
BtsIMutI CAGTG 9 cut(s) 389, 706, 928, 1346, 1368, 1566, 1663, 1732, 2271
BtuMI TCGCGA 1 cut(s) 847
BveI ACCTGC 2 cut(s) 1342, 1896
Cac8I GCNNGC 2 cut(s) 885, 915
CciI TCATGA 1 cut(s) 1441
CfoI GCGC 4 cut(s) 1439, 1452, 1566, 1987
Cfr13I GGNCC 8 cut(s) 32, 502, 886, 1270, 1397, 1476, 1833, 2239
Cfr9I CCCGGG 1 cut(s) 412
CseI GACGC 4 cut(s) 847, 913, 2171, 2228
CsiI ACCWGGT 1 cut(s) 1550
Csp6I GTAC 2 cut(s) 86, 2253
CviAII CATG 8 cut(s) 266, 373, 866, 914, 1442, 1627, 2183, 2236
CviQI GTAC 2 cut(s) 86, 2253
DraIII CACNNNGTG 1 cut(s) 653
EaeI YGGCCR 4 cut(s) 696, 1164, 1623, 2097
Ecl136II GAGCTC 1 cut(s) 677
Eco130I CCWWGG 3 cut(s) 505, 1591, 1626
Eco24I GRGCYC 4 cut(s) 265, 398, 679, 1591
Eco31I GGTCTC 1 cut(s) 1021
Eco47I GGWCC 2 cut(s) 502, 1397
Eco53kI GAGCTC 1 cut(s) 677
Eco57I CTGAAG 4 cut(s) 1089, 1590, 1724, 1938
Eco88I CYCGRG 6 cut(s) 93, 412, 580, 672, 969, 1473
EcoICRI GAGCTC 1 cut(s) 677
EcoO109I RGGNCCY 3 cut(s) 502, 1397, 1833
EcoRII CCWGG 2 cut(s) 1550, 1616
EcoT14I CCWWGG 3 cut(s) 505, 1591, 1626
EcoT38I GRGCYC 4 cut(s) 265, 398, 679, 1591
ErhI CCWWGG 3 cut(s) 505, 1591, 1626
Esp3I CGTCTC 1 cut(s) 896
FaeI CATG 8 cut(s) 269, 376, 869, 917, 1445, 1630, 2186, 2239
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 4 cut(s) 515, 696, 1313, 1795
FatI CATG 8 cut(s) 265, 372, 865, 913, 1441, 1626, 2182, 2235
FauI CCCGC 1 cut(s) 1884
FbaI TGATCA 3 cut(s) 429, 862, 1764
Fnu4HI GCNGC 6 cut(s) 8, 104, 1636, 1684, 1801, 2022
FokI GGATG 5 cut(s) 166, 200, 991, 1049, 2075
FriOI GRGCYC 4 cut(s) 265, 398, 679, 1591
Fsp4HI GCNGC 6 cut(s) 8, 104, 1636, 1684, 1801, 2022
GlaI GCGC 4 cut(s) 1438, 1451, 1565, 1986
GluI GCNGC 6 cut(s) 8, 104, 1636, 1684, 1801, 2022
GsaI CCCAGC 1 cut(s) 1375
GsuI CTGGAG 2 cut(s) 426, 1279
HaeII RGCGCY 1 cut(s) 1440
HapII CCGG 4 cut(s) 413, 790, 1163, 1247
HgaI GACGC 4 cut(s) 847, 913, 2171, 2228
HhaI GCGC 4 cut(s) 1439, 1452, 1566, 1987
Hin1I GRCGYC 2 cut(s) 2110, 2220
Hin1II CATG 8 cut(s) 269, 376, 869, 917, 1445, 1630, 2186, 2239
Hin6I GCGC 4 cut(s) 1437, 1450, 1564, 1985
HinP1I GCGC 4 cut(s) 1437, 1450, 1564, 1985
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HindIII AAGCTT 2 cut(s) 287, 572
HinfI GANTC 7 cut(s) 439, 713, 1238, 1278, 1701, 1995, 2143
HpaII CCGG 4 cut(s) 413, 790, 1163, 1247
HphI GGTGA 4 cut(s) 1877, 1889, 2078, 2152
Hpy166II GTNNAC 7 cut(s) 227, 763, 787, 837, 1546, 1885, 2233
Hpy8I GTNNAC 7 cut(s) 227, 763, 787, 837, 1546, 1885, 2233
Hpy99I CGWCG 2 cut(s) 32, 152
HpyAV CCTTC 8 cut(s) 51, 147, 193, 465, 1087, 1225, 1377, 1962
HpyCH4III ACNGT 6 cut(s) 163, 694, 1384, 1667, 1791, 2052
HpyCH4IV ACGT 4 cut(s) 347, 652, 2110, 2251
HpySE526I ACGT 4 cut(s) 347, 652, 2110, 2251
Hsp92I GRCGYC 2 cut(s) 2110, 2220
Hsp92II CATG 8 cut(s) 269, 376, 869, 917, 1445, 1630, 2186, 2239
HspAI GCGC 4 cut(s) 1437, 1450, 1564, 1985
Ksp22I TGATCA 3 cut(s) 429, 862, 1764
Lsp1109I GCAGC 5 cut(s) 19, 1622, 1670, 1787, 2008
LweI GCATC 4 cut(s) 89, 426, 1089, 1146
MabI ACCWGGT 1 cut(s) 1550
MaeII ACGT 4 cut(s) 347, 652, 2110, 2251
MaeIII GTNAC 9 cut(s) 157, 348, 387, 667, 1282, 1331, 1457, 2046, 2269
MboII GAAGA 4 cut(s) 334, 1192, 1402, 1988
MfeI CAATTG 2 cut(s) 600, 1423
MflI RGATCY 4 cut(s) 37, 634, 1262, 2005
MlsI TGGCCA 3 cut(s) 698, 1625, 2099
MluNI TGGCCA 3 cut(s) 698, 1625, 2099
MlyI GAGTC 4 cut(s) 433, 722, 1272, 1710
MmeI TCCRAC 1 cut(s) 1300
Mox20I TGGCCA 3 cut(s) 698, 1625, 2099
MroXI GAANNNNTTC 2 cut(s) 182, 290
MscI TGGCCA 3 cut(s) 698, 1625, 2099
MseI TTAA 4 cut(s) 570, 990, 1611, 1707
MslI CAYNNNNRTG 2 cut(s) 476, 1025
Msp20I TGGCCA 3 cut(s) 698, 1625, 2099
MspA1I CMGCKG 1 cut(s) 2266
MspI CCGG 4 cut(s) 413, 790, 1163, 1247
MspR9I CCNGG 6 cut(s) 413, 414, 791, 1163, 1552, 1618
MunI CAATTG 2 cut(s) 600, 1423
Mva1269I GAATGC 2 cut(s) 1637, 1987
MvaI CCWGG 2 cut(s) 1552, 1618
MvnI CGCG 3 cut(s) 847, 1452, 1985
NciI CCSGG 4 cut(s) 413, 414, 791, 1163
NcoI CCATGG 1 cut(s) 1626
NlaIII CATG 8 cut(s) 269, 376, 869, 917, 1445, 1630, 2186, 2239
NlaIV GGNNCC 7 cut(s) 397, 503, 562, 975, 1065, 1398, 1746
NmuCI GTSAC 3 cut(s) 387, 1331, 2269
NruI TCGCGA 1 cut(s) 847
NspI RCATGY 2 cut(s) 376, 917
OliI CACNNNNGTG 2 cut(s) 476, 1025
PaeI GCATGC 1 cut(s) 917
PagI TCATGA 1 cut(s) 1441
PaqCI CACCTGC 1 cut(s) 1896
PctI GAATGC 2 cut(s) 1637, 1987
PdmI GAANNNNTTC 2 cut(s) 182, 290
PfeI GAWTC 3 cut(s) 1238, 1995, 2143
PflFI GACNNNGTC 1 cut(s) 1947
PflMI CCANNNNNTGG 1 cut(s) 1320
PkrI GCNGC 6 cut(s) 9, 105, 1637, 1685, 1802, 2023
PleI GAGTC 4 cut(s) 433, 721, 1272, 1709
PpsI GAGTC 4 cut(s) 433, 721, 1272, 1709
Ppu21I YACGTR 1 cut(s) 653
PpuMI RGGWCCY 2 cut(s) 502, 1397
Psp124BI GAGCTC 1 cut(s) 679
Psp5II RGGWCCY 2 cut(s) 502, 1397
Psp6I CCWGG 2 cut(s) 1550, 1616
PspFI CCCAGC 1 cut(s) 1371
PspGI CCWGG 2 cut(s) 1550, 1616
PspN4I GGNNCC 7 cut(s) 397, 503, 562, 975, 1065, 1398, 1746
PspPI GGNCC 8 cut(s) 32, 502, 886, 1270, 1397, 1476, 1833, 2239
PspPPI RGGWCCY 2 cut(s) 502, 1397
PstI CTGCAG 3 cut(s) 900, 1084, 1353
PsuI RGATCY 4 cut(s) 37, 634, 1262, 2005
PsyI GACNNNGTC 1 cut(s) 1947
PvuII CAGCTG 1 cut(s) 2266
RruI TCGCGA 1 cut(s) 847
RsaI GTAC 2 cut(s) 87, 2254
RsaNI GTAC 2 cut(s) 86, 2253
RseI CAYNNNNRTG 2 cut(s) 476, 1025
SacI GAGCTC 1 cut(s) 679
SaqAI TTAA 4 cut(s) 570, 990, 1611, 1707
SatI GCNGC 6 cut(s) 8, 104, 1636, 1684, 1801, 2022
Sau96I GGNCC 8 cut(s) 32, 502, 886, 1270, 1397, 1476, 1833, 2239
ScaI AGTACT 1 cut(s) 87
SchI GAGTC 4 cut(s) 433, 722, 1272, 1710
ScrFI CCNGG 6 cut(s) 413, 414, 791, 1163, 1552, 1618
SexAI ACCWGGT 1 cut(s) 1550
SfaNI GCATC 4 cut(s) 89, 426, 1089, 1146
SfcI CTRYAG 4 cut(s) 896, 1080, 1349, 2226
SinI GGWCC 2 cut(s) 502, 1397
SmaI CCCGGG 1 cut(s) 414
SmiMI CAYNNNNRTG 2 cut(s) 476, 1025
SmlI CTYRAG 3 cut(s) 421, 1103, 2135
SmoI CTYRAG 3 cut(s) 421, 1103, 2135
SphI GCATGC 1 cut(s) 917
SsiI CCGC 6 cut(s) 104, 493, 959, 1452, 1576, 1891
SspI AATATT 1 cut(s) 1775
SstI GAGCTC 1 cut(s) 679
StyD4I CCNGG 6 cut(s) 411, 412, 789, 1161, 1550, 1616
StyI CCWWGG 3 cut(s) 505, 1591, 1626
TaaI ACNGT 6 cut(s) 163, 694, 1384, 1667, 1791, 2052
TaiI ACGT 4 cut(s) 350, 655, 2113, 2254
TaqI TCGA 3 cut(s) 53, 810, 1091
TatI WGTACW 1 cut(s) 85
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 3 cut(s) 1238, 1995, 2143
Tru1I TTAA 4 cut(s) 570, 990, 1611, 1707
Tru9I TTAA 4 cut(s) 570, 990, 1611, 1707
TscAI CASTG 9 cut(s) 396, 706, 928, 1353, 1368, 1573, 1670, 1739, 2278
TseFI GTSAC 3 cut(s) 387, 1331, 2269
TseI GCWGC 5 cut(s) 7, 1635, 1683, 1800, 2021
Tsp45I GTSAC 3 cut(s) 387, 1331, 2269
TspDTI ATGAA 5 cut(s) 282, 447, 993, 1458, 1987
TspGWI ACGGA 1 cut(s) 16
TspMI CCCGGG 1 cut(s) 412
TspRI CASTG 9 cut(s) 396, 706, 928, 1353, 1368, 1573, 1670, 1739, 2278
Tth111I GACNNNGTC 1 cut(s) 1947
Van91I CCANNNNNTGG 1 cut(s) 1320
VpaK11BI GGWCC 2 cut(s) 502, 1397
XapI RAATTY 1 cut(s) 1935
XbaI TCTAGA 2 cut(s) 1483, 1940
XceI RCATGY 2 cut(s) 376, 917
XcmI CCANNNNNNNNNTGG 1 cut(s) 1537
XmaI CCCGGG 1 cut(s) 412
XmaJI CCTAGG 1 cut(s) 505
XmnI GAANNNNTTC 2 cut(s) 182, 290
ZraI GACGTC 1 cut(s) 2111
ZrmI AGTACT 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.