AT5G28823

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000044
Physical Location & Seq
Reverse (-)
10837849 .. 10839826
1978 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G28823.1

Sequence Viewer

Length: 1707 bp
ATGATTTCAAGTTCTAGTTCATCTCGCGACAAAGGAGCAGAAGCAATTCCCGGAGGAGTCGTCGCTGTCGTCGATCCTCCAGACCCTAGGTGGCCTTATTTACATAGGTGGACGCAGGAGAGCTCTTCCCCACCGGTTAATCCTCCCCCAAATACACCGTTGATTCTCTCAGCTGCTAGAATAGGGTTGAGTAATTCTCGATCTATTCAAGATTATTTTCTTCCGGCGGTTTCAATTGATTCAGCTACTACCAAGTCTCAGTTAGCACCGTTAGTGAAGAGTTTGATTGAGATTGCAACTCCGACAATTGAACCTGTTGTCCAGAGAAGTCCCCTGCCTCTCCGGTGTCGACTCTCAAAGGAGCTTGGCAGGTTCCTTGCAACGTCAGTTCTACCTCTCATCATCTTGCAGCAGGTCAAGCTAACAGACACATCATCTACGCAGAGATGGCCTTCACTTGTGGTCTCTAGTGGTAAGAAGCGGATGACTACTGTTGGTATTGATCATAGTAAGGATTCAAAGGTTATTGATAGGTCTCGAACAGTTGAGGATGAGTCTCTGAAAGTTTTTTCAAAGGATTATCCTTGGGCTGCAAAGATGGATCAATCGAAGCGTAATTTGCATCGAGTTACTACGCCGGATTACTTAGAGCATGGAACCCCTTTGAGAGCATTGTGGCACGTGGATGATTGTTTGATGTTCGTCTCAACTTGGTCACCCGTTGCCAATTTCGAAGTTCCGGAGATCACAATGATTCCTGCTTGGCTTACGCTCAAGAACATCCCTAACCAGTTATACTCTTTTAAAGGGATTAAATGGATTGCTTCGGGGATTGGGGAGACTATGTTAACTAGCAGACCTTGGCTGGATCCAACCCAAATGGGAGAAGCTAAGATCTTGGTCGAGGTAAAACTTGATAAACCCTTTCCTCAAAGGGTTGCTTTAAAAGAAGAATGTGGCTCAATAACTATGGTTGATGTCGTTTACTCGTGGCTGCCTTCTAAGTGTTTAGAGAAGACTGTCGTTTCAGCTTGTAATAATGGTACTCCTTTGAATGAGAATAGCATTGTCAATGCTTCAACCAAGGCATTAGATACGGCTATTGTTTCTAATGGTGCAGCGATATTGAAAGGGTTTCACAAAACTGTTGATGACACATCGGTTTTACCCCTTCAAGTTATAGGTACTATCACCGACTTTCTCTCCTCTTCAAACTCGAAAGAAGAAACTGTCATTGGCTTGGGATCAGTAGCAATTACTGATGCAAGTAAAGATGTGGTTGTCGGTCCTCAGCTAGTTGAGAAGGAGGTCTTGCAAATTTCAGATTCAAATACTGCCATACTTTCTTCAACCATGAAAGTGATGGCTACTCCCGCAAAGGTCTCTACAAATAACACTACCTCTACTGCAGGGGTCAAATCTAGTACTAATACTTCTTTCCGCAAAGCTTCTAGTTCAAATAAATTTGCGGTGCTGGATTTAGCATCGGATGTGGTTCTGCGCGAAGATTCAAACATGGTTGATTCTGACAAGTCTGAGGATTCAGATGAGGATCTCATAATGAATCTAAAGTCAACATTTTCAGGAAAACATCTCCAAGACAGACCGTTGCAATTTCCGAACAAGGCAATAAATATTGGTCATGGAGGAAGAGGAAGAGGAAGACGAGGTCGAGGAAATCGTGGTCGACGAGGTGGGTTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

568

Amino Acids

61.79

Weight (kDa)

9.05

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 360, 403
AccI GTMKAC 2 cut(s) 349, 1687
AccII CGCG 2 cut(s) 27, 1503
AccIII TCCGGA 1 cut(s) 739
AciI CCGC 5 cut(s) 227, 481, 1374, 1441, 1469
AclWI GGATC 6 cut(s) 68, 609, 863, 876, 1252, 1560
AcsI RAATTY 2 cut(s) 1317, 1463
AcvI CACGTG 1 cut(s) 682
AfaI GTAC 3 cut(s) 1045, 1186, 1426
AgeI ACCGGT 1 cut(s) 133
AjuI GAANNNNNNNTTGG 2 cut(s) 1218, 1250
AloI GAACNNNNNNTCC 2 cut(s) 303, 335
AluBI AGCT 9 cut(s) 123, 173, 245, 364, 421, 890, 1031, 1294, 1448
AluI AGCT 9 cut(s) 123, 173, 245, 364, 421, 890, 1031, 1294, 1448
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 7 cut(s) 261, 469, 540, 561, 709, 833, 1387
AlwI GGATC 6 cut(s) 68, 609, 863, 876, 1252, 1560
Aor13HI TCCGGA 1 cut(s) 739
AoxI GGCC 2 cut(s) 92, 449
ApeKI GCWGC 5 cut(s) 173, 409, 590, 994, 1118
ApoI RAATTY 2 cut(s) 1317, 1463
AsiGI ACCGGT 1 cut(s) 133
Asp700I GAANNNNTTC 1 cut(s) 45
AspA2I CCTAGG 1 cut(s) 86
AspLEI GCGC 1 cut(s) 1503
AspS9I GGNCC 1 cut(s) 1286
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 2 cut(s) 708, 1183
AsuII TTCGAA 1 cut(s) 732
AvaII GGWCC 1 cut(s) 1286
AvrII CCTAGG 1 cut(s) 86
BamHI GGATCC 1 cut(s) 868
BanII GRGCYC 1 cut(s) 125
BarI GAAGNNNNNNTAC 2 cut(s) 1417, 1449
BauI CACGAG 1 cut(s) 988
BbrPI CACGTG 1 cut(s) 682
BbsI GAAGAC 2 cut(s) 1022, 1669
Bbv12I GWGCWC 1 cut(s) 125
BbvCI CCTCAGC 1 cut(s) 1290
BbvI GCAGC 5 cut(s) 160, 421, 577, 981, 1130
BccI CCATC 3 cut(s) 441, 592, 1357
BceAI ACGGC 1 cut(s) 1113
BclI TGATCA 1 cut(s) 502
BcnI CCSGG 1 cut(s) 51
BcoDI GTCTC 7 cut(s) 261, 469, 540, 561, 709, 833, 1387
BfaI CTAG 8 cut(s) 15, 87, 177, 468, 852, 1295, 1422, 1452
BfmI CTRYAG 1 cut(s) 1407
BfuAI ACCTGC 2 cut(s) 360, 403
BglII AGATCT 1 cut(s) 894
BisI GCNGC 5 cut(s) 174, 410, 591, 995, 1119
BlnI CCTAGG 1 cut(s) 86
BlsI GCNGC 5 cut(s) 175, 411, 592, 996, 1120
BmcAI AGTACT 1 cut(s) 1426
Bme1390I CCNGG 1 cut(s) 51
Bme18I GGWCC 1 cut(s) 1286
BmgT120I GGNCC 1 cut(s) 1286
BmiI GGNNCC 3 cut(s) 374, 658, 870
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 3 cut(s) 631, 1252, 1493
BpiI GAAGAC 2 cut(s) 1022, 1669
BplI GAGNNNNNCTC 2 cut(s) 181, 213
BpmI CTGGAG 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 1290
Bpu14I TTCGAA 1 cut(s) 732
BpuEI CTTGAG 1 cut(s) 758
BpuMI CCSGG 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 682
BsaBI GATNNNNATC 1 cut(s) 1551
BsaI GGTCTC 3 cut(s) 469, 540, 1387
BsaJI CCNNGG 4 cut(s) 86, 584, 860, 1083
BsaWI WCCGGW 3 cut(s) 133, 342, 739
BsaXI ACNNNNNCTCC 6 cut(s) 45, 75, 830, 860, 1187, 1217
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 790
Bse8I GATNNNNATC 1 cut(s) 1551
BseAI TCCGGA 1 cut(s) 739
BseDI CCNNGG 4 cut(s) 86, 584, 860, 1083
BseGI GGATG 5 cut(s) 489, 556, 691, 780, 1495
BseJI GATNNNNATC 1 cut(s) 1551
BseMII CTCAG 4 cut(s) 183, 272, 1304, 1527
BseNI ACTGG 1 cut(s) 790
BseRI GAGGAG 2 cut(s) 69, 1195
BseXI GCAGC 5 cut(s) 160, 421, 577, 981, 1130
BsgI GTGCAG 1 cut(s) 1137
Bsh1236I CGCG 2 cut(s) 27, 1503
BshFI GGCC 2 cut(s) 94, 451
BshTI ACCGGT 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 125
BsiSI CCGG 6 cut(s) 51, 134, 224, 343, 638, 740
BslFI GGGAC 1 cut(s) 315
BsmAI GTCTC 7 cut(s) 261, 469, 540, 561, 709, 833, 1387
BsmBI CGTCTC 1 cut(s) 709
BsmFI GGGAC 1 cut(s) 315
BsnI GGCC 2 cut(s) 94, 451
Bso31I GGTCTC 3 cut(s) 469, 540, 1387
Bsp119I TTCGAA 1 cut(s) 732
Bsp1286I GDGCHC 1 cut(s) 125
Bsp13I TCCGGA 1 cut(s) 739
Bsp143I GATC 9 cut(s) 73, 200, 502, 601, 744, 868, 894, 1244, 1552
Bsp68I TCGCGA 1 cut(s) 27
BspACI CCGC 5 cut(s) 227, 481, 1374, 1441, 1469
BspANI GGCC 2 cut(s) 94, 451
BspCNI CTCAG 4 cut(s) 182, 271, 1303, 1528
BspEI TCCGGA 1 cut(s) 739
BspFNI CGCG 2 cut(s) 27, 1503
BspLI GGNNCC 3 cut(s) 374, 658, 870
BspMAI CTGCAG 1 cut(s) 1411
BspMI ACCTGC 2 cut(s) 360, 403
BspPI GGATC 6 cut(s) 68, 609, 863, 876, 1252, 1560
BspQI GCTCTTC 1 cut(s) 130
BspT104I TTCGAA 1 cut(s) 732
BspTNI GGTCTC 3 cut(s) 469, 540, 1387
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 1 cut(s) 790
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 4 cut(s) 86, 584, 860, 1083
BssMI GATC 9 cut(s) 73, 200, 502, 601, 744, 868, 894, 1244, 1552
BssSI CACGAG 1 cut(s) 988
BssT1I CCWWGG 4 cut(s) 86, 584, 860, 1083
Bst2BI CACGAG 1 cut(s) 988
Bst4CI ACNGT 8 cut(s) 159, 270, 493, 544, 1021, 1147, 1231, 1608
Bst6I CTCTTC 5 cut(s) 130, 272, 1213, 1645, 1651
BstBAI YACGTR 1 cut(s) 682
BstBI TTCGAA 1 cut(s) 732
BstDEI CTNAG 7 cut(s) 169, 258, 646, 891, 1002, 1290, 1536
BstEII GGTNACC 1 cut(s) 714
BstF5I GGATG 5 cut(s) 489, 556, 691, 780, 1495
BstFNI CGCG 2 cut(s) 27, 1503
BstHHI GCGC 1 cut(s) 1503
BstKTI GATC 9 cut(s) 76, 203, 505, 604, 747, 871, 897, 1247, 1555
BstMAI GTCTC 7 cut(s) 261, 469, 540, 561, 709, 833, 1387
BstMBI GATC 9 cut(s) 73, 200, 502, 601, 744, 868, 894, 1244, 1552
BstMWI GCNNNNNNNGC 4 cut(s) 418, 448, 619, 1373
BstPI GGTNACC 1 cut(s) 714
BstSCI CCNGG 1 cut(s) 49
BstSFI CTRYAG 1 cut(s) 1407
BstUI CGCG 2 cut(s) 27, 1503
BstV1I GCAGC 5 cut(s) 160, 421, 577, 981, 1130
BstV2I GAAGAC 2 cut(s) 1022, 1669
BstX2I RGATCY 3 cut(s) 868, 894, 1552
BstYI RGATCY 3 cut(s) 868, 894, 1552
BsuRI GGCC 2 cut(s) 94, 451
BtsCI GGATG 5 cut(s) 489, 556, 691, 780, 1495
BtuMI TCGCGA 1 cut(s) 27
BveI ACCTGC 2 cut(s) 360, 403
CfoI GCGC 1 cut(s) 1503
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 1286
CseI GACGC 1 cut(s) 121
Csp6I GTAC 3 cut(s) 1044, 1185, 1425
CspAI ACCGGT 1 cut(s) 133
CviAII CATG 4 cut(s) 653, 1354, 1516, 1643
CviQI GTAC 3 cut(s) 1044, 1185, 1425
DdeI CTNAG 7 cut(s) 169, 258, 646, 891, 1002, 1290, 1536
DpnI GATC 9 cut(s) 75, 202, 504, 603, 746, 870, 896, 1246, 1554
DpnII GATC 9 cut(s) 73, 200, 502, 601, 744, 868, 894, 1244, 1552
DraI TTTAAA 2 cut(s) 805, 945
Eam1104I CTCTTC 5 cut(s) 130, 272, 1213, 1645, 1651
EarI CTCTTC 5 cut(s) 130, 272, 1213, 1645, 1651
Ecl136II GAGCTC 1 cut(s) 123
Eco130I CCWWGG 4 cut(s) 86, 584, 860, 1083
Eco24I GRGCYC 1 cut(s) 125
Eco31I GGTCTC 3 cut(s) 469, 540, 1387
Eco47I GGWCC 1 cut(s) 1286
Eco53kI GAGCTC 1 cut(s) 123
Eco72I CACGTG 1 cut(s) 682
Eco91I GGTNACC 1 cut(s) 714
EcoICRI GAGCTC 1 cut(s) 123
EcoO65I GGTNACC 1 cut(s) 714
EcoT14I CCWWGG 4 cut(s) 86, 584, 860, 1083
EcoT38I GRGCYC 1 cut(s) 125
ErhI CCWWGG 4 cut(s) 86, 584, 860, 1083
Esp3I CGTCTC 1 cut(s) 709
FaeI CATG 4 cut(s) 656, 1357, 1519, 1646
FalI AAGNNNNNCTT 4 cut(s) 925, 957, 1295, 1327
FaqI GGGAC 1 cut(s) 315
FatI CATG 4 cut(s) 652, 1353, 1515, 1642
FauI CCCGC 1 cut(s) 1381
FbaI TGATCA 1 cut(s) 502
FblI GTMKAC 2 cut(s) 349, 1687
Fnu4HI GCNGC 5 cut(s) 174, 410, 591, 995, 1119
FokI GGATG 5 cut(s) 496, 563, 698, 767, 1502
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 5 cut(s) 174, 410, 591, 995, 1119
FspBI CTAG 8 cut(s) 15, 87, 177, 468, 852, 1295, 1422, 1452
GlaI GCGC 1 cut(s) 1502
GluI GCNGC 5 cut(s) 174, 410, 591, 995, 1119
GsuI CTGGAG 1 cut(s) 63
HaeIII GGCC 2 cut(s) 94, 451
HapII CCGG 6 cut(s) 51, 134, 224, 343, 638, 740
HgaI GACGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 1503
Hin1II CATG 4 cut(s) 656, 1357, 1519, 1646
Hin6I GCGC 1 cut(s) 1501
HinP1I GCGC 1 cut(s) 1501
HincII GTYRAC 4 cut(s) 350, 849, 1575, 1688
HindII GTYRAC 4 cut(s) 350, 849, 1575, 1688
HindIII AAGCTT 1 cut(s) 1446
HpaI GTTAAC 1 cut(s) 849
HpaII CCGG 6 cut(s) 51, 134, 224, 343, 638, 740
HphI GGTGA 2 cut(s) 708, 1183
Hpy166II GTNNAC 6 cut(s) 111, 350, 849, 985, 1575, 1688
Hpy188I TCNGA 8 cut(s) 303, 561, 1324, 1489, 1528, 1537, 1546, 1620
Hpy188III TCNNGA 9 cut(s) 26, 80, 198, 209, 322, 537, 740, 775, 1584
Hpy8I GTNNAC 6 cut(s) 111, 350, 849, 985, 1575, 1688
Hpy99I CGWCG 3 cut(s) 65, 74, 1692
HpyAV CCTTC 4 cut(s) 462, 1008, 1181, 1297
HpyCH4III ACNGT 8 cut(s) 159, 270, 493, 544, 1021, 1147, 1231, 1608
HpyCH4IV ACGT 2 cut(s) 383, 681
HpyF10VI GCNNNNNNNGC 4 cut(s) 418, 448, 619, 1373
HpyF3I CTNAG 7 cut(s) 169, 258, 646, 891, 1002, 1290, 1536
HpySE526I ACGT 2 cut(s) 383, 681
Hsp92II CATG 4 cut(s) 656, 1357, 1519, 1646
HspAI GCGC 1 cut(s) 1501
Kpn2I TCCGGA 1 cut(s) 739
Ksp22I TGATCA 1 cut(s) 502
KspAI GTTAAC 1 cut(s) 849
Kzo9I GATC 9 cut(s) 73, 200, 502, 601, 744, 868, 894, 1244, 1552
LguI GCTCTTC 1 cut(s) 130
LmnI GCTCC 2 cut(s) 35, 361
Lsp1109I GCAGC 5 cut(s) 160, 421, 577, 981, 1130
LweI GCATC 3 cut(s) 631, 1252, 1493
MaeI CTAG 8 cut(s) 15, 87, 177, 468, 852, 1295, 1422, 1452
MaeII ACGT 2 cut(s) 383, 681
MaeIII GTNAC 2 cut(s) 628, 714
MalI GATC 9 cut(s) 75, 202, 504, 603, 746, 870, 896, 1246, 1554
MboI GATC 9 cut(s) 73, 200, 502, 601, 744, 868, 894, 1244, 1552
MfeI CAATTG 2 cut(s) 234, 306
MflI RGATCY 3 cut(s) 868, 894, 1552
MhlI GDGCHC 1 cut(s) 125
MlyI GAGTC 3 cut(s) 66, 345, 563
MmeI TCCRAC 2 cut(s) 326, 896
MroI TCCGGA 1 cut(s) 739
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 6 cut(s) 138, 804, 813, 848, 944, 1705
MslI CAYNNNNRTG 2 cut(s) 684, 1358
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 6 cut(s) 51, 134, 224, 343, 638, 740
MspR9I CCNGG 1 cut(s) 51
MunI CAATTG 2 cut(s) 234, 306
MvnI CGCG 2 cut(s) 27, 1503
MwoI GCNNNNNNNGC 4 cut(s) 418, 448, 619, 1373
NciI CCSGG 1 cut(s) 51
NdeII GATC 9 cut(s) 73, 200, 502, 601, 744, 868, 894, 1244, 1552
NlaIII CATG 4 cut(s) 656, 1357, 1519, 1646
NlaIV GGNNCC 3 cut(s) 374, 658, 870
NmuCI GTSAC 1 cut(s) 714
NruI TCGCGA 1 cut(s) 27
NspV TTCGAA 1 cut(s) 732
PciSI GCTCTTC 1 cut(s) 130
PcsI WCGNNNNNNNCGW 4 cut(s) 66, 69, 1678, 1687
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 9 cut(s) 163, 239, 515, 754, 1325, 1508, 1523, 1541, 1564
PflFI GACNNNGTC 1 cut(s) 1668
PfoI TCCNGGA 1 cut(s) 49
PinAI ACCGGT 1 cut(s) 133
PkrI GCNGC 5 cut(s) 175, 411, 592, 996, 1120
PleI GAGTC 3 cut(s) 65, 345, 562
PmaCI CACGTG 1 cut(s) 682
PmlI CACGTG 1 cut(s) 682
PpsI GAGTC 3 cut(s) 65, 345, 562
Ppu21I YACGTR 1 cut(s) 682
Psp124BI GAGCTC 1 cut(s) 125
PspCI CACGTG 1 cut(s) 682
PspEI GGTNACC 1 cut(s) 714
PspN4I GGNNCC 3 cut(s) 374, 658, 870
PspPI GGNCC 1 cut(s) 1286
PstI CTGCAG 1 cut(s) 1411
PsuI RGATCY 3 cut(s) 868, 894, 1552
PsyI GACNNNGTC 1 cut(s) 1668
PvuII CAGCTG 1 cut(s) 173
RruI TCGCGA 1 cut(s) 27
RsaI GTAC 3 cut(s) 1045, 1186, 1426
RsaNI GTAC 3 cut(s) 1044, 1185, 1425
RseI CAYNNNNRTG 2 cut(s) 684, 1358
SacI GAGCTC 1 cut(s) 125
SalI GTCGAC 2 cut(s) 348, 1686
SapI GCTCTTC 1 cut(s) 130
SaqAI TTAA 6 cut(s) 138, 804, 813, 848, 944, 1705
SatI GCNGC 5 cut(s) 174, 410, 591, 995, 1119
Sau3AI GATC 9 cut(s) 73, 200, 502, 601, 744, 868, 894, 1244, 1552
Sau96I GGNCC 1 cut(s) 1286
ScaI AGTACT 1 cut(s) 1426
SchI GAGTC 3 cut(s) 66, 345, 563
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 1 cut(s) 125
SfaNI GCATC 3 cut(s) 631, 1252, 1493
SfcI CTRYAG 1 cut(s) 1407
SfuI TTCGAA 1 cut(s) 732
SinI GGWCC 1 cut(s) 1286
SmiMI CAYNNNNRTG 2 cut(s) 684, 1358
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
SsiI CCGC 5 cut(s) 227, 481, 1374, 1441, 1469
SspI AATATT 1 cut(s) 1636
SspMI CTAG 8 cut(s) 15, 87, 177, 468, 852, 1295, 1422, 1452
SstI GAGCTC 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 4 cut(s) 86, 584, 860, 1083
TaaI ACNGT 8 cut(s) 159, 270, 493, 544, 1021, 1147, 1231, 1608
TaiI ACGT 2 cut(s) 386, 684
TaqII GACCGA 1 cut(s) 1274
TatI WGTACW 1 cut(s) 1424
TfiI GAWTC 9 cut(s) 163, 239, 515, 754, 1325, 1508, 1523, 1541, 1564
Tru1I TTAA 6 cut(s) 138, 804, 813, 848, 944, 1705
Tru9I TTAA 6 cut(s) 138, 804, 813, 848, 944, 1705
TseFI GTSAC 1 cut(s) 714
TseI GCWGC 5 cut(s) 173, 409, 590, 994, 1118
Tsp45I GTSAC 1 cut(s) 714
TspDTI ATGAA 3 cut(s) 9, 1370, 1577
Tth111I GACNNNGTC 1 cut(s) 1668
VpaK11BI GGWCC 1 cut(s) 1286
XapI RAATTY 2 cut(s) 1317, 1463
XcmI CCANNNNNNNNNTGG 2 cut(s) 87, 1360
XmaJI CCTAGG 1 cut(s) 86
XmiI GTMKAC 2 cut(s) 349, 1687
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 8 cut(s) 15, 87, 177, 468, 852, 1295, 1422, 1452
ZrmI AGTACT 1 cut(s) 1426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.