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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 361 |
| AcvI | CACGTG | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 335 |
| AflII | CTTAAG | 1 cut(s) | 389 |
| AflIII | ACRYGT | 1 cut(s) | 208 |
| AgsI | TTSAA | 3 cut(s) | 158, 206, 347 |
| AluBI | AGCT | 3 cut(s) | 95, 189, 276 |
| AluI | AGCT | 3 cut(s) | 95, 189, 276 |
| Alw21I | GWGCWC | 1 cut(s) | 191 |
| Alw26I | GTCTC | 2 cut(s) | 104, 424 |
| Ama87I | CYCGRG | 2 cut(s) | 184, 193 |
| ApeKI | GCWGC | 3 cut(s) | 92, 242, 460 |
| ApoI | RAATTY | 1 cut(s) | 361 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 210 |
| AspA2I | CCTAGG | 1 cut(s) | 23 |
| AspS9I | GGNCC | 1 cut(s) | 28 |
| AvaI | CYCGRG | 2 cut(s) | 184, 193 |
| AvaII | GGWCC | 1 cut(s) | 28 |
| AvrII | CCTAGG | 1 cut(s) | 23 |
| BanII | GRGCYC | 1 cut(s) | 191 |
| BbrPI | CACGTG | 1 cut(s) | 248 |
| BbsI | GAAGAC | 1 cut(s) | 303 |
| Bbv12I | GWGCWC | 1 cut(s) | 191 |
| BbvI | GCAGC | 2 cut(s) | 104, 254 |
| BccI | CCATC | 1 cut(s) | 364 |
| BclI | TGATCA | 1 cut(s) | 255 |
| BcoDI | GTCTC | 2 cut(s) | 104, 424 |
| BfaI | CTAG | 2 cut(s) | 24, 333 |
| BfrI | CTTAAG | 1 cut(s) | 389 |
| BisI | GCNGC | 3 cut(s) | 93, 243, 461 |
| BlnI | CCTAGG | 1 cut(s) | 23 |
| BlsI | GCNGC | 3 cut(s) | 94, 244, 462 |
| Bme18I | GGWCC | 1 cut(s) | 28 |
| BmeT110I | CYCGRG | 2 cut(s) | 184, 193 |
| BmgT120I | GGNCC | 1 cut(s) | 28 |
| BmiI | GGNNCC | 2 cut(s) | 29, 138 |
| BpiI | GAAGAC | 1 cut(s) | 303 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 167, 199 |
| BpuEI | CTTGAG | 1 cut(s) | 236 |
| BsaAI | YACGTR | 1 cut(s) | 248 |
| BsaJI | CCNNGG | 2 cut(s) | 23, 192 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 173, 203 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 335 |
| BseDI | CCNNGG | 2 cut(s) | 23, 192 |
| BseGI | GGATG | 3 cut(s) | 106, 184, 382 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 335 |
| BseRI | GAGGAG | 3 cut(s) | 149, 181, 233 |
| BseXI | GCAGC | 2 cut(s) | 104, 254 |
| BseYI | CCCAGC | 1 cut(s) | 120 |
| BsiHKAI | GWGCWC | 1 cut(s) | 191 |
| BsiHKCI | CYCGRG | 2 cut(s) | 184, 193 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 335 |
| BsmAI | GTCTC | 2 cut(s) | 104, 424 |
| BsoBI | CYCGRG | 2 cut(s) | 184, 193 |
| Bsp1286I | GDGCHC | 1 cut(s) | 191 |
| Bsp143I | GATC | 1 cut(s) | 255 |
| BspLI | GGNNCC | 2 cut(s) | 29, 138 |
| BspTI | CTTAAG | 1 cut(s) | 389 |
| BssECI | CCNNGG | 2 cut(s) | 23, 192 |
| BssMI | GATC | 1 cut(s) | 255 |
| BssT1I | CCWWGG | 1 cut(s) | 23 |
| Bst4CI | ACNGT | 2 cut(s) | 7, 79 |
| Bst6I | CTCTTC | 1 cut(s) | 81 |
| BstAFI | CTTAAG | 1 cut(s) | 389 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 59 |
| BstBAI | YACGTR | 1 cut(s) | 248 |
| BstC8I | GCNNGC | 2 cut(s) | 278, 354 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 333 |
| BstF5I | GGATG | 3 cut(s) | 106, 184, 382 |
| BstKTI | GATC | 1 cut(s) | 258 |
| BstMAI | GTCTC | 2 cut(s) | 104, 424 |
| BstMBI | GATC | 1 cut(s) | 255 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 59, 68 |
| BstV1I | GCAGC | 2 cut(s) | 104, 254 |
| BstV2I | GAAGAC | 1 cut(s) | 303 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 38 |
| BtsCI | GGATG | 3 cut(s) | 106, 184, 382 |
| BtsI | GCAGTG | 1 cut(s) | 363 |
| BtsIMutI | CAGTG | 1 cut(s) | 363 |
| Cac8I | GCNNGC | 2 cut(s) | 278, 354 |
| Cfr13I | GGNCC | 1 cut(s) | 28 |
| CviAII | CATG | 1 cut(s) | 281 |
| CviJI | RGCY | 6 cut(s) | 95, 139, 189, 276, 387, 463 |
| CviKI_1 | RGCY | 6 cut(s) | 95, 139, 189, 276, 387, 463 |
| DpnI | GATC | 1 cut(s) | 257 |
| DpnII | GATC | 1 cut(s) | 255 |
| Eam1104I | CTCTTC | 1 cut(s) | 81 |
| EarI | CTCTTC | 1 cut(s) | 81 |
| Ecl136II | GAGCTC | 1 cut(s) | 189 |
| Eco130I | CCWWGG | 1 cut(s) | 23 |
| Eco24I | GRGCYC | 1 cut(s) | 191 |
| Eco47I | GGWCC | 1 cut(s) | 28 |
| Eco53kI | GAGCTC | 1 cut(s) | 189 |
| Eco72I | CACGTG | 1 cut(s) | 248 |
| Eco88I | CYCGRG | 2 cut(s) | 184, 193 |
| EcoICRI | GAGCTC | 1 cut(s) | 189 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 333 |
| EcoRI | GAATTC | 1 cut(s) | 361 |
| EcoT14I | CCWWGG | 1 cut(s) | 23 |
| EcoT22I | ATGCAT | 1 cut(s) | 308 |
| EcoT38I | GRGCYC | 1 cut(s) | 191 |
| ErhI | CCWWGG | 1 cut(s) | 23 |
| FaeI | CATG | 1 cut(s) | 284 |
| FaiI | YATR | 4 cut(s) | 282, 308, 368, 398 |
| FatI | CATG | 1 cut(s) | 280 |
| FbaI | TGATCA | 1 cut(s) | 255 |
| Fnu4HI | GCNGC | 3 cut(s) | 93, 243, 461 |
| FokI | GGATG | 3 cut(s) | 113, 191, 389 |
| FriOI | GRGCYC | 1 cut(s) | 191 |
| Fsp4HI | GCNGC | 3 cut(s) | 93, 243, 461 |
| FspBI | CTAG | 2 cut(s) | 24, 333 |
| GluI | GCNGC | 3 cut(s) | 93, 243, 461 |
| GsaI | CCCAGC | 1 cut(s) | 124 |
| Hin1II | CATG | 1 cut(s) | 284 |
| HinfI | GANTC | 3 cut(s) | 17, 182, 432 |
| Hpy188I | TCNGA | 1 cut(s) | 437 |
| Hpy188III | TCNNGA | 5 cut(s) | 39, 195, 215, 233, 333 |
| HpyAV | CCTTC | 2 cut(s) | 36, 339 |
| HpyCH4III | ACNGT | 2 cut(s) | 7, 79 |
| HpyCH4IV | ACGT | 2 cut(s) | 210, 247 |
| HpyCH4V | TGCA | 5 cut(s) | 71, 170, 242, 306, 352 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 59, 68 |
| HpySE526I | ACGT | 2 cut(s) | 210, 247 |
| Hsp92II | CATG | 1 cut(s) | 284 |
| Ksp22I | TGATCA | 1 cut(s) | 255 |
| Kzo9I | GATC | 1 cut(s) | 255 |
| LmnI | GCTCC | 3 cut(s) | 136, 194, 220 |
| LpnPI | CCDG | 6 cut(s) | 24, 134, 218, 262, 297, 338 |
| Lsp1109I | GCAGC | 2 cut(s) | 104, 254 |
| MaeI | CTAG | 2 cut(s) | 24, 333 |
| MaeII | ACGT | 2 cut(s) | 210, 247 |
| MalI | GATC | 1 cut(s) | 257 |
| MboI | GATC | 1 cut(s) | 255 |
| MboII | GAAGA | 3 cut(s) | 27, 98, 308 |
| MhlI | GDGCHC | 1 cut(s) | 191 |
| MluCI | AATT | 6 cut(s) | 47, 57, 65, 251, 288, 361 |
| MlyI | GAGTC | 3 cut(s) | 11, 176, 426 |
| MnlI | CCTC | 8 cut(s) | 82, 127, 169, 202, 211, 286, 329, 445 |
| Mph1103I | ATGCAT | 1 cut(s) | 308 |
| MroXI | GAANNNNTTC | 1 cut(s) | 210 |
| MseI | TTAA | 2 cut(s) | 287, 390 |
| MspCI | CTTAAG | 1 cut(s) | 389 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 59, 68 |
| NdeII | GATC | 1 cut(s) | 255 |
| NlaIII | CATG | 1 cut(s) | 284 |
| NlaIV | GGNNCC | 2 cut(s) | 29, 138 |
| NsiI | ATGCAT | 1 cut(s) | 308 |
| PaeR7I | CTCGAG | 1 cut(s) | 184 |
| PdmI | GAANNNNTTC | 1 cut(s) | 210 |
| PkrI | GCNGC | 3 cut(s) | 94, 244, 462 |
| PleI | GAGTC | 3 cut(s) | 11, 176, 426 |
| PmaCI | CACGTG | 1 cut(s) | 248 |
| PmlI | CACGTG | 1 cut(s) | 248 |
| PpsI | GAGTC | 3 cut(s) | 11, 176, 426 |
| Ppu21I | YACGTR | 1 cut(s) | 248 |
| Psp124BI | GAGCTC | 1 cut(s) | 191 |
| PspCI | CACGTG | 1 cut(s) | 248 |
| PspFI | CCCAGC | 1 cut(s) | 120 |
| PspN4I | GGNNCC | 2 cut(s) | 29, 138 |
| PspPI | GGNCC | 1 cut(s) | 28 |
| PspXI | VCTCGAGB | 1 cut(s) | 184 |
| SacI | GAGCTC | 1 cut(s) | 191 |
| SaqAI | TTAA | 2 cut(s) | 287, 390 |
| SatI | GCNGC | 3 cut(s) | 93, 243, 461 |
| Sau3AI | GATC | 1 cut(s) | 255 |
| Sau96I | GGNCC | 1 cut(s) | 28 |
| SchI | GAGTC | 3 cut(s) | 11, 176, 426 |
| SduI | GDGCHC | 1 cut(s) | 191 |
| SetI | ASST | 6 cut(s) | 97, 191, 213, 250, 278, 316 |
| Sfr274I | CTCGAG | 1 cut(s) | 184 |
| SinI | GGWCC | 1 cut(s) | 28 |
| SlaI | CTCGAG | 1 cut(s) | 184 |
| SmlI | CTYRAG | 3 cut(s) | 184, 215, 389 |
| SmoI | CTYRAG | 3 cut(s) | 184, 215, 389 |
| Sse9I | AATT | 6 cut(s) | 47, 57, 65, 251, 288, 361 |
| SspI | AATATT | 1 cut(s) | 154 |
| SspMI | CTAG | 2 cut(s) | 24, 333 |
| SstI | GAGCTC | 1 cut(s) | 191 |
| StyI | CCWWGG | 1 cut(s) | 23 |
| TaaI | ACNGT | 2 cut(s) | 7, 79 |
| TaiI | ACGT | 2 cut(s) | 213, 250 |
| TaqI | TCGA | 1 cut(s) | 185 |
| TasI | AATT | 6 cut(s) | 47, 57, 65, 251, 288, 361 |
| Tru1I | TTAA | 2 cut(s) | 287, 390 |
| Tru9I | TTAA | 2 cut(s) | 287, 390 |
| TscAI | CASTG | 1 cut(s) | 363 |
| TseI | GCWGC | 3 cut(s) | 92, 242, 460 |
| TspDTI | ATGAA | 2 cut(s) | 117, 336 |
| TspRI | CASTG | 1 cut(s) | 363 |
| Vha464I | CTTAAG | 1 cut(s) | 389 |
| VpaK11BI | GGWCC | 1 cut(s) | 28 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 333 |
| XapI | RAATTY | 1 cut(s) | 361 |
| XbaI | TCTAGA | 1 cut(s) | 332 |
| XhoI | CTCGAG | 1 cut(s) | 184 |
| XmaJI | CCTAGG | 1 cut(s) | 23 |
| XmnI | GAANNNNTTC | 1 cut(s) | 210 |
| XspI | CTAG | 2 cut(s) | 24, 333 |
| Zsp2I | ATGCAT | 1 cut(s) | 308 |