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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 160 |
| AccII | CGCG | 1 cut(s) | 136 |
| AciI | CCGC | 1 cut(s) | 166 |
| AcuI | CTGAAG | 2 cut(s) | 359, 471 |
| AdeI | CACNNNGTG | 1 cut(s) | 418 |
| AjiI | CACGTC | 1 cut(s) | 462 |
| AjnI | CCWGG | 1 cut(s) | 414 |
| AluBI | AGCT | 2 cut(s) | 116, 283 |
| AluI | AGCT | 2 cut(s) | 116, 283 |
| Alw21I | GWGCWC | 1 cut(s) | 467 |
| AoxI | GGCC | 2 cut(s) | 121, 431 |
| ApeKI | GCWGC | 6 cut(s) | 5, 39, 113, 212, 233, 452 |
| AspS9I | GGNCC | 2 cut(s) | 121, 431 |
| AsuHPI | GGTGA | 2 cut(s) | 341, 404 |
| AsuNHI | GCTAGC | 1 cut(s) | 440 |
| Bbv12I | GWGCWC | 1 cut(s) | 467 |
| BbvI | GCAGC | 6 cut(s) | 17, 26, 125, 199, 220, 439 |
| BccI | CCATC | 3 cut(s) | 192, 194, 257 |
| BciT130I | CCWGG | 1 cut(s) | 416 |
| BfaI | CTAG | 2 cut(s) | 117, 441 |
| BfmI | CTRYAG | 1 cut(s) | 453 |
| BisI | GCNGC | 6 cut(s) | 6, 40, 114, 213, 234, 453 |
| BlsI | GCNGC | 6 cut(s) | 7, 41, 115, 214, 235, 454 |
| Bme1390I | CCNGG | 1 cut(s) | 416 |
| BmgBI | CACGTC | 1 cut(s) | 462 |
| BmgT120I | GGNCC | 2 cut(s) | 121, 431 |
| BmiI | GGNNCC | 3 cut(s) | 122, 423, 432 |
| BmrFI | CCNGG | 1 cut(s) | 416 |
| BmsI | GCATC | 4 cut(s) | 100, 220, 310, 439 |
| BmtI | GCTAGC | 1 cut(s) | 444 |
| Bpu10I | CCTNAGC | 1 cut(s) | 324 |
| BsaJI | CCNNGG | 2 cut(s) | 20, 397 |
| BsaWI | WCCGGW | 1 cut(s) | 424 |
| Bse118I | RCCGGY | 1 cut(s) | 379 |
| Bse3DI | GCAATG | 1 cut(s) | 15 |
| BseBI | CCWGG | 1 cut(s) | 416 |
| BseDI | CCNNGG | 2 cut(s) | 20, 397 |
| BseGI | GGATG | 2 cut(s) | 184, 325 |
| BseMI | GCAATG | 1 cut(s) | 15 |
| BseMII | CTCAG | 1 cut(s) | 375 |
| BseXI | GCAGC | 6 cut(s) | 17, 26, 125, 199, 220, 439 |
| BsgI | GTGCAG | 1 cut(s) | 111 |
| Bsh1236I | CGCG | 1 cut(s) | 136 |
| BshFI | GGCC | 2 cut(s) | 123, 433 |
| BsiHKAI | GWGCWC | 1 cut(s) | 467 |
| BsiSI | CCGG | 2 cut(s) | 380, 425 |
| BsmI | GAATGC | 1 cut(s) | 75 |
| BsnI | GGCC | 2 cut(s) | 123, 433 |
| Bsp1286I | GDGCHC | 1 cut(s) | 467 |
| BspACI | CCGC | 1 cut(s) | 166 |
| BspANI | GGCC | 2 cut(s) | 123, 433 |
| BspCNI | CTCAG | 1 cut(s) | 376 |
| BspFNI | CGCG | 1 cut(s) | 136 |
| BspLI | GGNNCC | 3 cut(s) | 122, 423, 432 |
| BspMAI | CTGCAG | 1 cut(s) | 457 |
| BspOI | GCTAGC | 1 cut(s) | 444 |
| BspQI | GCTCTTC | 1 cut(s) | 472 |
| BsrDI | GCAATG | 1 cut(s) | 15 |
| BsrFI | RCCGGY | 1 cut(s) | 379 |
| BssAI | RCCGGY | 1 cut(s) | 379 |
| BssECI | CCNNGG | 2 cut(s) | 20, 397 |
| BssT1I | CCWWGG | 1 cut(s) | 397 |
| Bst2UI | CCWGG | 1 cut(s) | 416 |
| Bst4CI | ACNGT | 3 cut(s) | 24, 251, 343 |
| Bst6I | CTCTTC | 1 cut(s) | 472 |
| BstC8I | GCNNGC | 2 cut(s) | 381, 442 |
| BstDEI | CTNAG | 2 cut(s) | 324, 384 |
| BstDSI | CCRYGG | 1 cut(s) | 20 |
| BstF5I | GGATG | 2 cut(s) | 184, 325 |
| BstFNI | CGCG | 1 cut(s) | 136 |
| BstNI | CCWGG | 1 cut(s) | 416 |
| BstSCI | CCNGG | 1 cut(s) | 414 |
| BstSFI | CTRYAG | 1 cut(s) | 453 |
| BstUI | CGCG | 1 cut(s) | 136 |
| BstV1I | GCAGC | 6 cut(s) | 17, 26, 125, 199, 220, 439 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 61 |
| BsuRI | GGCC | 2 cut(s) | 123, 433 |
| BtgI | CCRYGG | 1 cut(s) | 20 |
| BtrI | CACGTC | 1 cut(s) | 462 |
| BtsCI | GGATG | 2 cut(s) | 184, 325 |
| BtsI | GCAGTG | 2 cut(s) | 462, 471 |
| BtsIMutI | CAGTG | 3 cut(s) | 192, 462, 471 |
| Cac8I | GCNNGC | 2 cut(s) | 381, 442 |
| Cfr10I | RCCGGY | 1 cut(s) | 379 |
| Cfr13I | GGNCC | 2 cut(s) | 121, 431 |
| CseI | GACGC | 2 cut(s) | 142, 146 |
| CsiI | ACCWGGT | 1 cut(s) | 414 |
| CviAII | CATG | 3 cut(s) | 189, 221, 530 |
| CviJI | RGCY | 9 cut(s) | 116, 123, 205, 212, 283, 379, 383, 433, 440 |
| CviKI_1 | RGCY | 9 cut(s) | 116, 123, 205, 212, 283, 379, 383, 433, 440 |
| DdeI | CTNAG | 2 cut(s) | 324, 384 |
| DraIII | CACNNNGTG | 1 cut(s) | 418 |
| Eam1104I | CTCTTC | 1 cut(s) | 472 |
| EarI | CTCTTC | 1 cut(s) | 472 |
| Eco130I | CCWWGG | 1 cut(s) | 397 |
| Eco57I | CTGAAG | 2 cut(s) | 359, 471 |
| EcoO109I | RGGNCCY | 1 cut(s) | 121 |
| EcoRII | CCWGG | 1 cut(s) | 414 |
| EcoT14I | CCWWGG | 1 cut(s) | 397 |
| ErhI | CCWWGG | 1 cut(s) | 397 |
| FaeI | CATG | 3 cut(s) | 192, 224, 533 |
| FaiI | YATR | 8 cut(s) | 32, 51, 190, 222, 290, 407, 507, 531 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 357, 389 |
| FatI | CATG | 3 cut(s) | 188, 220, 529 |
| FauI | CCCGC | 1 cut(s) | 173 |
| FblI | GTMKAC | 1 cut(s) | 160 |
| Fnu4HI | GCNGC | 6 cut(s) | 6, 40, 114, 213, 234, 453 |
| FokI | GGATG | 2 cut(s) | 171, 332 |
| Fsp4HI | GCNGC | 6 cut(s) | 6, 40, 114, 213, 234, 453 |
| FspBI | CTAG | 2 cut(s) | 117, 441 |
| GluI | GCNGC | 6 cut(s) | 6, 40, 114, 213, 234, 453 |
| HaeIII | GGCC | 2 cut(s) | 123, 433 |
| HapII | CCGG | 2 cut(s) | 380, 425 |
| HgaI | GACGC | 2 cut(s) | 142, 146 |
| Hin1II | CATG | 3 cut(s) | 192, 224, 533 |
| HincII | GTYRAC | 1 cut(s) | 161 |
| HindII | GTYRAC | 1 cut(s) | 161 |
| HinfI | GANTC | 3 cut(s) | 34, 101, 409 |
| HpaII | CCGG | 2 cut(s) | 380, 425 |
| HphI | GGTGA | 2 cut(s) | 341, 404 |
| Hpy166II | GTNNAC | 1 cut(s) | 161 |
| Hpy188I | TCNGA | 2 cut(s) | 106, 229 |
| Hpy188III | TCNNGA | 1 cut(s) | 517 |
| Hpy8I | GTNNAC | 1 cut(s) | 161 |
| Hpy99I | CGWCG | 2 cut(s) | 147, 162 |
| HpyAV | CCTTC | 1 cut(s) | 495 |
| HpyCH4III | ACNGT | 3 cut(s) | 24, 251, 343 |
| HpyCH4IV | ACGT | 1 cut(s) | 461 |
| HpyCH4V | TGCA | 5 cut(s) | 82, 92, 113, 192, 455 |
| HpyF3I | CTNAG | 2 cut(s) | 324, 384 |
| HpySE526I | ACGT | 1 cut(s) | 461 |
| Hsp92II | CATG | 3 cut(s) | 192, 224, 533 |
| KroI | GCCGGC | 1 cut(s) | 379 |
| KroNI | GCCGGC | 1 cut(s) | 381 |
| LguI | GCTCTTC | 1 cut(s) | 472 |
| LmnI | GCTCC | 1 cut(s) | 487 |
| LpnPI | CCDG | 7 cut(s) | 56, 72, 393, 401, 428, 438, 474 |
| Lsp1109I | GCAGC | 6 cut(s) | 17, 26, 125, 199, 220, 439 |
| LweI | GCATC | 4 cut(s) | 100, 220, 310, 439 |
| MabI | ACCWGGT | 1 cut(s) | 414 |
| MaeI | CTAG | 2 cut(s) | 117, 441 |
| MaeII | ACGT | 1 cut(s) | 461 |
| MaeIII | GTNAC | 2 cut(s) | 329, 457 |
| MboII | GAAGA | 1 cut(s) | 459 |
| MhlI | GDGCHC | 1 cut(s) | 467 |
| MlyI | GAGTC | 2 cut(s) | 43, 110 |
| MmeI | TCCRAC | 1 cut(s) | 362 |
| MnlI | CCTC | 1 cut(s) | 134 |
| MroNI | GCCGGC | 1 cut(s) | 379 |
| MseI | TTAA | 1 cut(s) | 270 |
| MspI | CCGG | 2 cut(s) | 380, 425 |
| MspR9I | CCNGG | 1 cut(s) | 416 |
| Mva1269I | GAATGC | 1 cut(s) | 75 |
| MvaI | CCWGG | 1 cut(s) | 416 |
| MvnI | CGCG | 1 cut(s) | 136 |
| NaeI | GCCGGC | 1 cut(s) | 381 |
| NgoMIV | GCCGGC | 1 cut(s) | 379 |
| NheI | GCTAGC | 1 cut(s) | 440 |
| NlaIII | CATG | 3 cut(s) | 192, 224, 533 |
| NlaIV | GGNNCC | 3 cut(s) | 122, 423, 432 |
| NmuCI | GTSAC | 2 cut(s) | 329, 457 |
| PciSI | GCTCTTC | 1 cut(s) | 472 |
| PctI | GAATGC | 1 cut(s) | 75 |
| PdiI | GCCGGC | 1 cut(s) | 381 |
| PfeI | GAWTC | 1 cut(s) | 409 |
| PflFI | GACNNNGTC | 1 cut(s) | 141 |
| PkrI | GCNGC | 6 cut(s) | 7, 41, 115, 214, 235, 454 |
| PleI | GAGTC | 2 cut(s) | 42, 109 |
| PpsI | GAGTC | 2 cut(s) | 42, 109 |
| Psp6I | CCWGG | 1 cut(s) | 414 |
| PspGI | CCWGG | 1 cut(s) | 414 |
| PspN4I | GGNNCC | 3 cut(s) | 122, 423, 432 |
| PspPI | GGNCC | 2 cut(s) | 121, 431 |
| PstI | CTGCAG | 1 cut(s) | 457 |
| PsyI | GACNNNGTC | 1 cut(s) | 141 |
| SalI | GTCGAC | 1 cut(s) | 159 |
| SapI | GCTCTTC | 1 cut(s) | 472 |
| SaqAI | TTAA | 1 cut(s) | 270 |
| SatI | GCNGC | 6 cut(s) | 6, 40, 114, 213, 234, 453 |
| Sau96I | GGNCC | 2 cut(s) | 121, 431 |
| SchI | GAGTC | 2 cut(s) | 43, 110 |
| ScrFI | CCNGG | 1 cut(s) | 416 |
| SduI | GDGCHC | 1 cut(s) | 467 |
| SetI | ASST | 8 cut(s) | 91, 118, 279, 285, 403, 417, 464, 493 |
| SexAI | ACCWGGT | 1 cut(s) | 414 |
| SfaNI | GCATC | 4 cut(s) | 100, 220, 310, 439 |
| SfcI | CTRYAG | 1 cut(s) | 453 |
| SsiI | CCGC | 1 cut(s) | 166 |
| SspI | AATATT | 1 cut(s) | 523 |
| SspMI | CTAG | 2 cut(s) | 117, 441 |
| StyD4I | CCNGG | 1 cut(s) | 414 |
| StyI | CCWWGG | 1 cut(s) | 397 |
| TaaI | ACNGT | 3 cut(s) | 24, 251, 343 |
| TaiI | ACGT | 1 cut(s) | 464 |
| TaqI | TCGA | 2 cut(s) | 160, 279 |
| TfiI | GAWTC | 1 cut(s) | 409 |
| Tru1I | TTAA | 1 cut(s) | 270 |
| Tru9I | TTAA | 1 cut(s) | 270 |
| TscAI | CASTG | 3 cut(s) | 199, 462, 478 |
| TseFI | GTSAC | 2 cut(s) | 329, 457 |
| TseI | GCWGC | 6 cut(s) | 5, 39, 113, 212, 233, 452 |
| Tsp45I | GTSAC | 2 cut(s) | 329, 457 |
| TspDTI | ATGAA | 2 cut(s) | 422, 494 |
| TspRI | CASTG | 3 cut(s) | 199, 462, 478 |
| Tth111I | GACNNNGTC | 1 cut(s) | 141 |
| XmiI | GTMKAC | 1 cut(s) | 160 |
| XspI | CTAG | 2 cut(s) | 117, 441 |